Personlig profil
Kort præsentation
My major scientific focus is directed to the understanding of the functionality of non-protein coding RNAs (ncRNAs) and the implications of RNA structure. My methods of choice are RNA structure modeling, prediction of RNA-RNA and protein-RNA binding, analysis of next generation sequencing data including single-cell RNA-seq, comparative genomics, prediction and annotation of ncRNAs. Currently I am involved in investigations of novel ncRNAs in bacteria (NextProd) and animals (FAANG consortium), host-virus RNA-RNA interactions (Assoc Prof Troels KH Scheel, UCPH), single-cell RNA sequencing in studying neurogenesis (Assoc Prof Vanessa J Hall, UCPH), and transcriptomics in stem cell models for neurodegenerative diseases (NeuroStem).
Samarbejde og topforskningsområder i de sidste fem år
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Characterization of the virus-host RNA-RNA interactome across important human pathogenic RNA viruses
Damas, N. D., Seemann, S. E., Costa, R., Krambrich, J., Fossat, N. J., Rivera-Rangel, L. R., Fahnøe, U., Nielsen, L., Gorodkin, J., Bukh, J. & Scheel, T. K. H., 15 maj 2026, (E-pub ahead of print) I: PLoS Pathogens. 22, 5, s. e1014217Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review
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Exploring the regulatory potential of RNA structures in 202 cyanobacterial genomes
Geissler, A. S., Carrasquer-Alvarez, E., Anthon, C., Frigaard, N.-U., Gorodkin, J. & Seemann, S. E., 2026, I: Nucleic Acids Research. 54, 4, 16 s., gkag081.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review
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Light and excessive CO2 uptake inhibit growth of Synechococcus sp. PCC 7002 under very high CO2 levels
Carrasquer-Alvarez, E., Geissler, A. S., Abraham, J. P., Gorodkin, J., Pfleger, B. F., Seemann, S. E. & Frigaard, N. U., 2026, I: Algal Research. 96, 11 s., 104705.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review
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Very high CO2 concentrations inhibit photosynthesis and trigger transcriptomic stress responses in cyanobacteria
Geissler, A. S., Carrasquer-Alvarez, E., Gorodkin, J., Frigaard, N.-U. & Seemann, S. E., 2026, I: NAR Genomics and Bioinformatics. 8, 1, 14 s., lqaf207.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review
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Associating cancer-related RNA structure disrupting SNPs in LincRNAs to function
Han, X., Anthon, C., Geissler, A. S., Sabarinathan, R., Seemann, S. E., Havgaard, J. H. & Gorodkin, J., 2025, I: BMC Genomics. 26, 13 s., 1100.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review
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Methane and CO2 consumption from a synthetic waste gas by microbial communities in enriched seawater
Frigaard, N. U. & Seemann, S. E., 2025, I: Carbon Capture Science and Technology. 14, 13 s., 100324.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review
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Photosynthesis in Synechocystis sp. PCC 6803 is not optimally regulated under very high CO2
Carrasquer-alvarez, E., Hoffmann, U. A., Geissler, A. S., Knave, A., Gorodkin, J., Seemann, S. E., Hudson, E. P. & Frigaard, N.-U., 2025, I: Applied Microbiology and Biotechnology. 109, 1, 19 s., 33.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review
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Clusters of mammalian conserved RNA structures in UTRs associate with RBP binding sites
Gadekar, V. P., Welford Munk, A., Miladi, M., Junge, A., Backofen, R., Seemann, S. E. & Gorodkin, J., 2024, I: NAR Genomics and Bioinformatics. 6, 3, 16 s., lqae089.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review
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