Intet billede af Søren Johannes Sørensen

Søren Johannes Sørensen

Ph.D.

  • Universitetsparken 15

    2100 København Ø

  • Kilde: Scopus
1991 …2024

Publikationer pr. år

Personlig profil

Aktuel forskning

I am currently team leader for a group of 14 scientists, 12 phd’s, and several students applying molecular techniques in microbial ecological studies at the Section of Microbiology. My research focuses on social interactions in microbial populations. My group’s studies evaluate the extent of genetic flow within natural communities and their response to environmental perturbations.

The section houses state of the art culture independent experimental infrastructure that enables us to examine how microbes interact at a scale that is relevant for such small organisms and to examine and identify the roles of the individual species that contribute to these interactions.

We investigate how microbes work together in in their natural state such as biofilms and the effect this has on microbial communities in in vivo systems such as human or animal gut, soil, or phase change communities. These are related to our in vitro model systems, plant and animal models to field and cohord studies, where we  examine phenomenon such as horizontal gene transfer or emergent community properties and evolutionary strategies. To do so we use techniques such as high throughput sequencing, flow cytometry and ultra-high resolution bioimaging or confocal microscopy and microbial reporter systems.

The pioneering work of the section has had been recognized for its impact in diverse areas in which microbial interactions are critical. These include, Soil biodiversity and bioremediation, the role of horizontal gene transfer, human disease progression, the effects of species diversity in plant animal and environmental microbiomes, how microbes interact in evolutionary strategies and the significance of cooperation verses antagonism in microbial systems.

Working in these areas necessitates close collaboration with international scientists from around the world that come to the section and to whom members of the section visit in scientific exchange programs. They span all corners of the globe including Prof A. Spormann, Stanford University, Prof. S. Kjelleberg, University of NSW; Prof. M. Schloter, Helmholtz Zentrum München; and Prof. Md Hans Bisgaard COPSAC back here in Denmark.

These collaborations have helped more than 20 postdocs and 30 past Ph.D. fellows follow their career path both here and around the world to obtain successful positions in both academia and research.

CV

I currently lead the Section of Microbiology where I, coordinate several international and domestic initiatives, am cofounder and vice director of the Copenhagen high throughput sequencing facility. Coordinating roles include leading large international research projects such as Trainbiodiverse, a 20-partner consortium investigating soil microbiology, and section management approximately 30 staff. My research priorities focus on social interactions in natural microbial communities with special focus on biofilm formation and horizontal gene transfer. Specifically, I have a deep desire to understand the evolutionary mechanisms behind synergistic interspecies interactions and dependencies and the emergent properties of complex microbial populations. I have co-authored >350 scientific papers in international (peer reviewed) journals, books and presentations at international meetings with a google scholar H index of 89. A full list of citations is available at https://scholar.google.dk/citations?user=HlNN0OQAAAAJ&hl=en.

 

 

EDUCATION

 

1989-1992

Ph.D. from the Faculty of Natural Science, University of Copenhagen (14/05/1992)

 

1980-1988

M.Sc. in Molecular Ecology

 

 

PROFFESSIONEL CAREER

 

2015

5 MTh’s visiting professor at University of California and Stanford University

 

2011 – ongoing

Head of Section of Microbiology, Department of Biology, University of Copenhagen

 

2010

5 MTh’s visiting professor at The J. Craig Venter Institute, San Diego, USA

 

2005 – ongoing

Professor at the Institute of Biology, University of Copenhagen

 

2002

2 Months visiting scientist at Macquarie University, Sydney, Australia

 

2000 – 2004

Honourees Associate Lecturer at School of Biology Macquarie University, Australia

 

1999 – 2000

7 MTh’s visiting scientist at Macquarie University, Sydney, Australia

 

1997 – 2004

Associated professor at Dept. General Microbiology, University of Copenhagen

 

1993 – 1994

6 MTh’s visiting scientist at EPA's Environmental Research Laboratory, Florida

 

1992 – 1996

Assistant professor at Dept. General Microbiology, University of Copenhagen

 

1989 – 1992

Ph.D. at Faculty of Natural Science, University of Copenhagen

 

1989 – 1990

10 MTh’s visiting scientist at EPA's Environmental Research Laboratory, Florida

 

 

COLLABORATIONS (RECENT)

 

My research is firmly rooted in a large existing network of Danish and international collaborators:

Microbial ecology: Prof. L. Philippot, Agroecology, INRA  Dijon; Prof A. Spormann and Prof. T. Fukami, Stanford University, Prof. N. Boon, Gent University; Prof. T. Vogel, Université de Lyon; Prof. S. Kjelleberg, University of NSW; Prof. E. Wellington, University of Warwick; Prof. M. Schloter, Helmholtz Zentrum München; Prof. J. J. Boomsma, UCPH, Prof. H. Bisgaard COPSAC DK.
Bioinformatics and modelling: Prof. A. Sczyrba and A. Goesmann, Universität Bielefeld; J.U. Kreft University of Birmingham; Dr J. Xavier, Sloan Kettering Cancer Center; Prof. M. Blaser, Rutgers University; Prof. K. Gernaey, and Prof. A. Gorm, CBS, DTU. Dr. S. Rasmussen, UCPH

Mobile genetic elements: Prof. K. Smalla, Julius Kühn-Institut; Prof. I. Mizrahi, Ben-Gurion University; Prof. D. van Elsas, University of Groningen; Prof. D. Springael, Katholieke Universiteit Leuven; Prof. B. Smets and Prof. F. Aarestrup, DTU.

 

SUPERVISION OF STUDENTS

 

Mentor for >40 completed postdocs in molecular microbial ecology

Supervisor of >50 completed Ph.D. students in molecular microbial ecology

Supervisor of >90 completed masters students in microbiology, at the Faculty of Science, Department of Biology, University of Copenhagen, Denmark.

 

TOTAL PUBLICATIONS

Peer reviewed articles:                             >300                                      

Peer reviewed book chapters:                      15

Number of first and last authorships         130

Public outreach activities:                              5

Scientific oral presentations:                   >100

(approx. 50% as invited speaker)

Posters:                                                     >250

H-index: Google Scholar                             89

   

 

Emneord

  • Det Natur- og Biovidenskabelige Fakultet
  • HTG, Antibiotic resistance, biosensors, ecology, microbiology

Samarbejde og topforskningsområder i de sidste fem år

Seneste eksterne samarbejde på lande-/områdeniveau. Dyk ned i detaljerne ved at klikke på prikkerne eller