A collaborative backbone resource for comparative studies of subterranean evolution: The World Asellidae database

Nathanaelle Saclier, Louis Duchemin, Lara Konecny-Dupré, Philippe Grison, David Eme, Chloé Martin, Cécile Callou, Tristan Lefébure, Clémentine François, Colin Issartel, Julian J. Lewis, Fabio Stoch, Boris Sket, Sanja Gottstein, Teo Delić, Maja Zagmajster, Michal Grabowski, Dieter Weber, Ana Sofia P. S. Reboleira, Dmitry PalatovKaloust Paragamian, Lee R. F. D. Knight, Georges Michel, Francois Lefebvre, Mohammad Javad Malek Hosseini, Ana I. Camacho, Begoña Gartzia De Bikuña, Amina Taleb, Nouria Belaidi, Raoul P. Tuekam Kayo, Diana Maria Paola Galassi, Oana Teodora Moldovan, Christophe J. Douady, Florian Malard*

*Corresponding author af dette arbejde

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

3 Citationer (Scopus)

Abstract

Transition to novel environments, such as groundwater colonization by surface organisms, provides an excellent research ground to study phenotypic evolution. However, interspecific comparative studies on evolution to groundwater life are few because of the challenge in assembling large ecological and molecular resources for species-rich taxa comprised of surface and subterranean species. Here, we make available to the scientific community an operational set of working tools and resources for the Asellidae, a family of freshwater isopods containing hundreds of surface and subterranean species. First, we release the World Asellidae database (WAD) and its web application, a sustainable and FAIR solution to producing and sharing data and biological material. WAD provides access to thousands of species occurrences, specimens, DNA extracts and DNA sequences with rich metadata ensuring full scientific traceability. Second, we perform a large-scale dated phylogenetic reconstruction of Asellidae to support phylogenetic comparative analyses. Of 424 terminal branches, we identify 34 pairs of surface and subterranean species representing independent replicates of the transition from surface water to groundwater. Third, we exemplify the usefulness of WAD for documenting phenotypic shifts associated with colonization of subterranean habitats. We provide the first phylogenetically controlled evidence that body size of males decreases relative to that of females upon groundwater colonization, suggesting competition for rare receptive females selects for smaller, more agile males in groundwater. By making these tools and resources widely accessible, we open up new opportunities for exploring how phenotypic traits evolve in response to changes in selective pressures and trade-offs during groundwater colonization.

OriginalsprogEngelsk
Artikelnummere13882
TidsskriftMolecular Ecology Resources
Vol/bind24
Udgave nummer1
Antal sider19
ISSN1755-098X
DOI
StatusUdgivet - 2024

Bibliografisk note

Funding Information:
We thank all collectors, including the many speleologists and naturalists, who kindly provided specimens of asellids: their donation together with their names is gratefully acknowledged in the database. The World Asellidae database GOTIT is hosted by the CNRS/IN2P3 Computing Center (Villeurbanne, France). Sampling, taxonomic identification, DNA sequencing, database management, BS measurements and data analysis were supported financially by French National Research Agency projects CONVERGENOMICS (ANR‐15‐CE32‐0005), EUR H20'Lyon project (ANR‐17‐EURE‐0018) and Biodiversa+ (Project DarCo), the European Biodiversity Partnership under the 2021‐2022 BiodivProtect joint call for research proposals, co‐funded by the European Commission (GA no. 101052342) (F.M., N.S., C.J.D., L.K.D., T.L., C.F., C.I.); the Slovenian Research Agency through the Research Core Programme Funding P1‐0184 (T.D., B.S. and M.Z.); Spanish project PID2019‐110243GB‐100 of MICINN/FEDER (.); Romania Ministry of Research, Innovation and Digitization grant, CNCS/CCCDI—UEFISCDI, project 2/2019 (DARKFOOD), within PNCDI III (O.T.M.); the Polish Ministry of Science and Higher Education through projects no. N N303 579439 and 5818/B/P01/2010/39 (M.G.); the VILLUM FONDEN (research grant 15471) and Portuguese National Funds through ‘Fundação para a Ciência e a Tecnologia’ (FCT) within the cE3c Unit funding UIDB/00329/2020 (A.S.P.S.R.); Belgium exceptional grant ARES‐CCD and French SCAC project (R.P.T.K.). We thank the associate editor and two anonymous reviewers for comments on an earlier draft of this manuscript. A.I.C

Publisher Copyright:
© 2023 John Wiley & Sons Ltd.

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