Adaptation of the short intergenic spacers between co-directional genes to the Shine-Dalgarno motif among prokaryote genomes

Albert Palleja; Santiago García-Vallvé; Antoni Romeu

doi:10.1186/1471-2164-10-537

Adaptation of the short intergenic spacers between co-directional genes to the Shine-Dalgarno motif among prokaryote genomes

Albert Palleja, Santiago García-Vallvé, Antoni Romeu

Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

9 Citationer (Scopus)

Abstract

In prokaryote genomes most of the co-directional genes are in close proximity. Even the coding sequence or the stop codon of a gene can overlap with the Shine-Dalgarno (SD) sequence of the downstream co-directional gene. In this paper we analyze how the presence of SD may influence the stop codon usage or the spacing lengths between co-directional genes.

Originalsprog	Engelsk
Tidsskrift	B M C Genomics
Vol/bind	10
Sider (fra-til)	537
Antal sider	13
ISSN	1471-2164
DOI	https://doi.org/10.1186/1471-2164-10-537
Status	Udgivet - 18 nov. 2009
Udgivet eksternt	Ja

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10.1186/1471-2164-10-537

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Citationsformater

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AU - Palleja, Albert

AU - García-Vallvé, Santiago

AU - Romeu, Antoni

PY - 2009/11/18

Y1 - 2009/11/18

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AB - In prokaryote genomes most of the co-directional genes are in close proximity. Even the coding sequence or the stop codon of a gene can overlap with the Shine-Dalgarno (SD) sequence of the downstream co-directional gene. In this paper we analyze how the presence of SD may influence the stop codon usage or the spacing lengths between co-directional genes.

U2 - 10.1186/1471-2164-10-537

DO - 10.1186/1471-2164-10-537

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JO - B M C Genomics

JF - B M C Genomics

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