Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat

Patricia C. Babbitt; Pantelis G. Bagos; Amos Bairoch; Alex Bateman; Arnaud Chatonnet; Mark Jinan Chen; David J. Craik; Robert D. Finn; David Gloriam; Daniel H. Haft; Bernard Henrissat; Gemma L. Holliday; Vignir Isberg; Quentin Kaas; David Landsman; Nicolas Lenfant; Gerard Manning; Nozomi Nagano; Narayanaswamy Srinivasan; Claire O’Donovan; Kim D. Pruitt; Ramanathan Sowdhamini; Neil D. Rawlings; Milton H. Saier; Joanna L. Sharman; Michael Spedding; Konstantinos D. Tsirigos; Ake Vastermark; Gerrit Vriend

doi:10.1093/database/bav063

Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat

Patricia C. Babbitt, Pantelis G. Bagos, Amos Bairoch, Alex Bateman, Arnaud Chatonnet, Mark Jinan Chen, David J. Craik, Robert D. Finn, David Gloriam, Daniel H. Haft, Bernard Henrissat, Gemma L. Holliday, Vignir Isberg, Quentin Kaas, David Landsman, Nicolas Lenfant, Gerard Manning, Nozomi Nagano, Narayanaswamy Srinivasan, Claire O’DonovanKim D. Pruitt, Ramanathan Sowdhamini, Neil D. Rawlings, Milton H. Saier, Joanna L. Sharman, Michael Spedding, Konstantinos D. Tsirigos, Ake Vastermark, Gerrit Vriend

Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

9 Citationer (Scopus)

214 Downloads (Pure)

Abstract

During 11–12 August 2014, a Protein Bioinformatics and Community Resources Retreat was held at the Wellcome Trust Genome Campus in Hinxton, UK. This meeting brought together the principal investigators of several specialized protein resources (such as CAZy, TCDB and MEROPS) as well as those from protein databases from the large Bioinformatics centres (including UniProt and RefSeq). The retreat was divided into five sessions: (1) key challenges, (2) the databases represented, (3) best practices for maintenance and curation, (4) information flow to and from large data centers and (5) communication and funding. An important outcome of this meeting was the creation of a Specialist Protein Resource Network that we believe will improve coordination of the activities of its member resources. We invite further protein database resources to join the network and continue the dialogue.

Originalsprog	Engelsk
Tidsskrift	Database: The Journal of Biological Databases and Curation
Vol/bind	2015
Sider (fra-til)	1-5
Antal sider	5
ISSN	1758-0463
DOI	https://doi.org/10.1093/database/bav063
Status	Udgivet - 18 maj 2015

Bibliografisk note

Funding for open access charge: K.D.P, NCBI/NLM/NIH/DHHS

Adgang til dokumentet

10.1093/database/bav063Licens: CC BY

Database-2015-Babbitt-database-bav063Forlagets udgivne version, 624 KBLicens: CC BY

Citationsformater

Babbitt, P. C., Bagos, P. G., Bairoch, A., Bateman, A., Chatonnet, A., Chen, M. J., Craik, D. J., Finn, R. D., Gloriam, D., Haft, D. H., Henrissat, B., Holliday, G. L., Isberg, V., Kaas, Q., Landsman, D., Lenfant, N., Manning, G., Nagano, N., Srinivasan, N., ... Vriend, G. (2015). Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat. Database: The Journal of Biological Databases and Curation, 2015, 1-5. https://doi.org/10.1093/database/bav063

Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat. / Babbitt, Patricia C.; Bagos, Pantelis G.; Bairoch, Amos; Bateman, Alex; Chatonnet, Arnaud; Chen, Mark Jinan; Craik, David J.; Finn, Robert D.; Gloriam, David; Haft, Daniel H.; Henrissat, Bernard; Holliday, Gemma L.; Isberg, Vignir; Kaas, Quentin; Landsman, David; Lenfant, Nicolas; Manning, Gerard; Nagano, Nozomi; Srinivasan, Narayanaswamy; O’Donovan, Claire; Pruitt, Kim D.; Sowdhamini, Ramanathan; Rawlings, Neil D.; Saier, Milton H.; Sharman, Joanna L.; Spedding, Michael; Tsirigos, Konstantinos D.; Vastermark, Ake; Vriend, Gerrit.

I: Database: The Journal of Biological Databases and Curation, Bind 2015, 18.05.2015, s. 1-5.

Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

Babbitt, PC, Bagos, PG, Bairoch, A, Bateman, A, Chatonnet, A, Chen, MJ, Craik, DJ, Finn, RD, Gloriam, D, Haft, DH, Henrissat, B, Holliday, GL, Isberg, V, Kaas, Q, Landsman, D, Lenfant, N, Manning, G, Nagano, N, Srinivasan, N, O’Donovan, C, Pruitt, KD, Sowdhamini, R, Rawlings, ND, Saier, MH, Sharman, JL, Spedding, M, Tsirigos, KD, Vastermark, A & Vriend, G 2015, 'Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat', Database: The Journal of Biological Databases and Curation, bind 2015, s. 1-5. https://doi.org/10.1093/database/bav063

Babbitt, Patricia C. ; Bagos, Pantelis G. ; Bairoch, Amos ; Bateman, Alex ; Chatonnet, Arnaud ; Chen, Mark Jinan ; Craik, David J. ; Finn, Robert D. ; Gloriam, David ; Haft, Daniel H. ; Henrissat, Bernard ; Holliday, Gemma L. ; Isberg, Vignir ; Kaas, Quentin ; Landsman, David ; Lenfant, Nicolas ; Manning, Gerard ; Nagano, Nozomi ; Srinivasan, Narayanaswamy ; O’Donovan, Claire ; Pruitt, Kim D. ; Sowdhamini, Ramanathan ; Rawlings, Neil D. ; Saier, Milton H. ; Sharman, Joanna L. ; Spedding, Michael ; Tsirigos, Konstantinos D. ; Vastermark, Ake ; Vriend, Gerrit. / Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat. I: Database: The Journal of Biological Databases and Curation. 2015 ; Bind 2015. s. 1-5.

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abstract = "During 11–12 August 2014, a Protein Bioinformatics and Community Resources Retreat was held at the Wellcome Trust Genome Campus in Hinxton, UK. This meeting brought together the principal investigators of several specialized protein resources (such as CAZy, TCDB and MEROPS) as well as those from protein databases from the large Bioinformatics centres (including UniProt and RefSeq). The retreat was divided into five sessions: (1) key challenges, (2) the databases represented, (3) best practices for maintenance and curation, (4) information flow to and from large data centers and (5) communication and funding. An important outcome of this meeting was the creation of a Specialist Protein Resource Network that we believe will improve coordination of the activities of its member resources. We invite further protein database resources to join the network and continue the dialogue.",

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AU - Craik, David J.

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AU - Kaas, Quentin

AU - Landsman, David

AU - Lenfant, Nicolas

AU - Manning, Gerard

AU - Nagano, Nozomi

AU - Srinivasan, Narayanaswamy

AU - O’Donovan, Claire

AU - Pruitt, Kim D.

AU - Sowdhamini, Ramanathan

AU - Rawlings, Neil D.

AU - Saier, Milton H.

AU - Sharman, Joanna L.

AU - Spedding, Michael

AU - Tsirigos, Konstantinos D.

AU - Vastermark, Ake

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