Critical Assessment of Metagenome Interpretation: a benchmark of metagenomics software

Alexander Sczyrba; Peter Hofmann; Peter Belmann; David Koslicki; Stefan Janssen; Johannes Dröge; Ivan Gregor; Stephan Majda; Jessika Fiedler; Eik Dahms; Andreas Bremges; Adrian Fritz; Ruben Garrido-Oter; Tue Sparholt Jørgensen; Nicole Shapiro; Philip D. Blood; Alexey Gurevich; Yang Bai; Dmitrij Turaev; Matthew Z. DeMaere; Rayan Chikhi; Niranjan Nagarajan; Christopher Quince; Fernando Meyer; Monika Balvociute; Lars Hestbjerg Hansen; Søren Johannes Sørensen; Burton K. H. Chia; Bertrand Denis; Jeff L. Froula; Zhong Wang; Robert Egan; Dongwan Don Kang; Jeffrey J. Cook; Charles Deltel; Michael Beckstette; Claire Lemaitre; Pierre Peterlongo; Guillaume Rizk; Dominique Lavenier; Yu-Wei Wu; Steven W. Singer; Chirag Jain; Marc Strous; Heiner Klingenberg; Peter Meinicke; Michael D. Barton; Thomas Lingner; Hsin-Hung Lin; Yu-Chieh Liao; Genivaldo Gueiros Z. Silva; Daniel A. Cuevas; Robert A. Edwards; Surya Saha; Vitor C. Piro; Bernhard Y. Renard; Mihai Pop; Hans-Peter Klenk; Markus Göker; Nikos C. Kyrpides; Tanja Woyke; Julia A. Vorholt; Paul Schulze-Lefert; Edward M. Rubin; Aaron E. Darling; Thomas Rattei; Alice C. McHardy

doi:10.1038/NMETH.4458

Critical Assessment of Metagenome Interpretation: a benchmark of metagenomics software

Alexander Sczyrba, Peter Hofmann, Peter Belmann, David Koslicki, Stefan Janssen, Johannes Dröge, Ivan Gregor, Stephan Majda, Jessika Fiedler, Eik Dahms, Andreas Bremges, Adrian Fritz, Ruben Garrido-Oter, Tue Sparholt Jørgensen, Nicole Shapiro, Philip D. Blood, Alexey Gurevich, Yang Bai, Dmitrij Turaev, Matthew Z. DeMaereRayan Chikhi, Niranjan Nagarajan, Christopher Quince, Fernando Meyer, Monika Balvociute, Lars Hestbjerg Hansen, Søren Johannes Sørensen, Burton K. H. Chia, Bertrand Denis, Jeff L. Froula, Zhong Wang, Robert Egan, Dongwan Don Kang, Jeffrey J. Cook, Charles Deltel, Michael Beckstette, Claire Lemaitre, Pierre Peterlongo, Guillaume Rizk, Dominique Lavenier, Yu-Wei Wu, Steven W. Singer, Chirag Jain, Marc Strous, Heiner Klingenberg, Peter Meinicke, Michael D. Barton, Thomas Lingner, Hsin-Hung Lin, Yu-Chieh Liao, Genivaldo Gueiros Z. Silva, Daniel A. Cuevas, Robert A. Edwards, Surya Saha, Vitor C. Piro, Bernhard Y. Renard, Mihai Pop, Hans-Peter Klenk, Markus Göker, Nikos C. Kyrpides, Tanja Woyke, Julia A. Vorholt, Paul Schulze-Lefert, Edward M. Rubin, Aaron E. Darling, Thomas Rattei, Alice C. McHardy

Microbiology

Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

531 Citationer (Scopus)

270 Downloads (Pure)

Originalsprog	Engelsk
Tidsskrift	Nature Methods
Vol/bind	14
Udgave nummer	11
Sider (fra-til)	1063-1071
Antal sider	9
ISSN	1548-7091
DOI	https://doi.org/10.1038/NMETH.4458
Status	Udgivet - 2017

Adgang til dokumentet

10.1038/NMETH.4458Licens: CC BY

Critical Assessment of Metagenome InterpretationForlagets udgivne version, 5,64 MBLicens: CC BY

https://www.biorxiv.org/content/early/2017/06/12/099127

Citationsformater

Sczyrba, A., Hofmann, P., Belmann, P., Koslicki, D., Janssen, S., Dröge, J., Gregor, I., Majda, S., Fiedler, J., Dahms, E., Bremges, A., Fritz, A., Garrido-Oter, R., Jørgensen, T. S., Shapiro, N., Blood, P. D., Gurevich, A., Bai, Y., Turaev, D., ... McHardy, A. C. (2017). Critical Assessment of Metagenome Interpretation: a benchmark of metagenomics software. Nature Methods, 14(11), 1063-1071. https://doi.org/10.1038/NMETH.4458

Sczyrba, A, Hofmann, P, Belmann, P, Koslicki, D, Janssen, S, Dröge, J, Gregor, I, Majda, S, Fiedler, J, Dahms, E, Bremges, A, Fritz, A, Garrido-Oter, R, Jørgensen, TS, Shapiro, N, Blood, PD, Gurevich, A, Bai, Y, Turaev, D, DeMaere, MZ, Chikhi, R, Nagarajan, N, Quince, C, Meyer, F, Balvociute, M, Hansen, LH, Sørensen, SJ, Chia, BKH, Denis, B, Froula, JL, Wang, Z, Egan, R, Kang, DD, Cook, JJ, Deltel, C, Beckstette, M, Lemaitre, C, Peterlongo, P, Rizk, G, Lavenier, D, Wu, Y-W, Singer, SW, Jain, C, Strous, M, Klingenberg, H, Meinicke, P, Barton, MD, Lingner, T, Lin, H-H, Liao, Y-C, Silva, GGZ, Cuevas, DA, Edwards, RA, Saha, S, Piro, VC, Renard, BY, Pop, M, Klenk, H-P, Göker, M, Kyrpides, NC, Woyke, T, Vorholt, JA, Schulze-Lefert, P, Rubin, EM, Darling, AE, Rattei, T & McHardy, AC 2017, 'Critical Assessment of Metagenome Interpretation: a benchmark of metagenomics software', Nature Methods, bind 14, nr. 11, s. 1063-1071. https://doi.org/10.1038/NMETH.4458

@article{34e3af347c1c478c9f269d85c98e4c12,

title = "Critical Assessment of Metagenome Interpretation: a benchmark of metagenomics software",

author = "Alexander Sczyrba and Peter Hofmann and Peter Belmann and David Koslicki and Stefan Janssen and Johannes Dr{\"o}ge and Ivan Gregor and Stephan Majda and Jessika Fiedler and Eik Dahms and Andreas Bremges and Adrian Fritz and Ruben Garrido-Oter and J{\o}rgensen, {Tue Sparholt} and Nicole Shapiro and Blood, {Philip D.} and Alexey Gurevich and Yang Bai and Dmitrij Turaev and DeMaere, {Matthew Z.} and Rayan Chikhi and Niranjan Nagarajan and Christopher Quince and Fernando Meyer and Monika Balvociute and Hansen, {Lars Hestbjerg} and S{\o}rensen, {S{\o}ren Johannes} and Chia, {Burton K. H.} and Bertrand Denis and Froula, {Jeff L.} and Zhong Wang and Robert Egan and Kang, {Dongwan Don} and Cook, {Jeffrey J.} and Charles Deltel and Michael Beckstette and Claire Lemaitre and Pierre Peterlongo and Guillaume Rizk and Dominique Lavenier and Yu-Wei Wu and Singer, {Steven W.} and Chirag Jain and Marc Strous and Heiner Klingenberg and Peter Meinicke and Barton, {Michael D.} and Thomas Lingner and Hsin-Hung Lin and Yu-Chieh Liao and Silva, {Genivaldo Gueiros Z.} and Cuevas, {Daniel A.} and Edwards, {Robert A.} and Surya Saha and Piro, {Vitor C.} and Renard, {Bernhard Y.} and Mihai Pop and Hans-Peter Klenk and Markus G{\"o}ker and Kyrpides, {Nikos C.} and Tanja Woyke and Vorholt, {Julia A.} and Paul Schulze-Lefert and Rubin, {Edward M.} and Darling, {Aaron E.} and Thomas Rattei and McHardy, {Alice C.}",

year = "2017",

doi = "10.1038/NMETH.4458",

language = "English",

volume = "14",

pages = "1063--1071",

journal = "Nature Methods",

issn = "1548-7091",

publisher = "nature publishing group",

number = "11",

}

TY - JOUR

T1 - Critical Assessment of Metagenome Interpretation

T2 - a benchmark of metagenomics software

AU - Sczyrba, Alexander

AU - Hofmann, Peter

AU - Belmann, Peter

AU - Koslicki, David

AU - Janssen, Stefan

AU - Dröge, Johannes

AU - Gregor, Ivan

AU - Majda, Stephan

AU - Fiedler, Jessika

AU - Dahms, Eik

AU - Bremges, Andreas

AU - Fritz, Adrian

AU - Garrido-Oter, Ruben

AU - Jørgensen, Tue Sparholt

AU - Shapiro, Nicole

AU - Blood, Philip D.

AU - Gurevich, Alexey

AU - Bai, Yang

AU - Turaev, Dmitrij

AU - DeMaere, Matthew Z.

AU - Chikhi, Rayan

AU - Nagarajan, Niranjan

AU - Quince, Christopher

AU - Meyer, Fernando

AU - Balvociute, Monika

AU - Hansen, Lars Hestbjerg

AU - Sørensen, Søren Johannes

AU - Chia, Burton K. H.

AU - Denis, Bertrand

AU - Froula, Jeff L.

AU - Wang, Zhong

AU - Egan, Robert

AU - Kang, Dongwan Don

AU - Cook, Jeffrey J.

AU - Deltel, Charles

AU - Beckstette, Michael

AU - Lemaitre, Claire

AU - Peterlongo, Pierre

AU - Rizk, Guillaume

AU - Lavenier, Dominique

AU - Wu, Yu-Wei

AU - Singer, Steven W.

AU - Jain, Chirag

AU - Strous, Marc

AU - Klingenberg, Heiner

AU - Meinicke, Peter

AU - Barton, Michael D.

AU - Lingner, Thomas

AU - Lin, Hsin-Hung

AU - Liao, Yu-Chieh

AU - Silva, Genivaldo Gueiros Z.

AU - Cuevas, Daniel A.

AU - Edwards, Robert A.

AU - Saha, Surya

AU - Piro, Vitor C.

AU - Renard, Bernhard Y.

AU - Pop, Mihai

AU - Klenk, Hans-Peter

AU - Göker, Markus

AU - Kyrpides, Nikos C.

AU - Woyke, Tanja

AU - Vorholt, Julia A.

AU - Schulze-Lefert, Paul

AU - Rubin, Edward M.

AU - Darling, Aaron E.

AU - Rattei, Thomas

AU - McHardy, Alice C.

PY - 2017

Y1 - 2017

U2 - 10.1038/NMETH.4458

DO - 10.1038/NMETH.4458

M3 - Journal article

SN - 1548-7091

VL - 14

SP - 1063

EP - 1071

JO - Nature Methods

JF - Nature Methods

IS - 11

ER -