Abstract
Background: Machine learning methods for clinical assistance require a large number of annotations from trained experts to achieve optimal performance. Previous work in natural language processing has shown that it is possible to automatically extract annotations from the free-text reports associated with chest X-rays. Methods: This study investigated techniques to extract 49 labels in a hierarchical tree structure from chest X-ray reports written in Danish. The labels were extracted from approximately 550,000 reports by performing multi-class, multi-label classification using a method based on pattern-matching rules, a classic approach in the literature for solving this task. The performance of this method was compared to that of open-source large language models that were pre-trained on Danish data and fine-tuned for classification. Results: Methods developed for English were also applicable to Danish and achieved similar performance (a weighted F1 score of 0.778 on 49 findings). A small set of expert annotations was sufficient to achieve competitive results, even with an unbalanced dataset. Conclusions: Natural language processing techniques provide a promising alternative to human expert annotation when annotations of chest X-ray reports are needed. Large language models can outperform traditional pattern-matching methods.
Originalsprog | Engelsk |
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Artikelnummer | 37 |
Tidsskrift | AI (Switzerland) |
Vol/bind | 6 |
Udgave nummer | 2 |
Antal sider | 19 |
DOI | |
Status | Udgivet - 2025 |
Bibliografisk note
Funding Information:This research was funded by Innovation Fund Denmark grant number 0176-00013B.
Publisher Copyright:
© 2025 by the authors.