PET-BIDS, an extension to the brain imaging data structure for positron emission tomography

Martin Nørgaard; Granville J Matheson; Hanne D Hansen; Adam Thomas; Graham Searle; Gaia Rizzo; Mattia Veronese; Alessio Giacomel; Maqsood Yaqub; Matteo Tonietto; Thomas Funck; Ashley Gillman; Hugo Boniface; Alexandre Routier; Jelle R Dalenberg; Tobey Betthauser; Franklin Feingold; Christopher J Markiewicz; Krzysztof J Gorgolewski; Ross W Blair; Stefan Appelhoff; Remi Gau; Taylor Salo; Guiomar Niso; Cyril Pernet; Christophe Phillips; Robert Oostenveld; Jean-Dominique Gallezot; Richard E Carson; Gitte M Knudsen; Robert B Innis; Melanie Ganz

doi:10.1101/2021.06.16.448390

PET-BIDS, an extension to the brain imaging data structure for positron emission tomography

Martin Nørgaard, Granville J Matheson, Hanne D Hansen, Adam Thomas, Graham Searle, Gaia Rizzo, Mattia Veronese, Alessio Giacomel, Maqsood Yaqub, Matteo Tonietto, Thomas Funck, Ashley Gillman, Hugo Boniface, Alexandre Routier, Jelle R Dalenberg, Tobey Betthauser, Franklin Feingold, Christopher J Markiewicz, Krzysztof J Gorgolewski, Ross W BlairStefan Appelhoff, Remi Gau, Taylor Salo, Guiomar Niso, Cyril Pernet, Christophe Phillips, Robert Oostenveld, Jean-Dominique Gallezot, Richard E Carson, Gitte M Knudsen, Robert B Innis, Melanie Ganz

Publikation: Working paper › Preprint

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Abstract

The Brain Imaging Data Structure (BIDS) is a standard for organizing and describing neuroimaging datasets. It serves not only to facilitate the process of data sharing and aggregation, but also to simplify the application and development of new methods and software for working with neuroimaging data. Here, we present an extension of BIDS to include positron emission tomography (PET) data (PET-BIDS). We describe the PET-BIDS standard in detail and share several open-access datasets curated following PET-BIDS. Additionally, we highlight several tools which are already available for converting, validating and analyzing PET-BIDS datasets.Competing Interest StatementThe authors have declared no competing interest.

Originalsprog	Engelsk
Antal sider	8
DOI	https://doi.org/10.1101/2021.06.16.448390
Status	Udgivet - 2021

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Nørgaard, M., Matheson, G. J., Hansen, H. D., Thomas, A., Searle, G., Rizzo, G., Veronese, M., Giacomel, A., Yaqub, M., Tonietto, M., Funck, T., Gillman, A., Boniface, H., Routier, A., Dalenberg, J. R., Betthauser, T., Feingold, F., Markiewicz, C. J., Gorgolewski, K. J., ... Ganz, M. (2021). PET-BIDS, an extension to the brain imaging data structure for positron emission tomography. bioRxiv https://doi.org/10.1101/2021.06.16.448390

Nørgaard, M, Matheson, GJ, Hansen, HD, Thomas, A, Searle, G, Rizzo, G, Veronese, M, Giacomel, A, Yaqub, M, Tonietto, M, Funck, T, Gillman, A, Boniface, H, Routier, A, Dalenberg, JR, Betthauser, T, Feingold, F, Markiewicz, CJ, Gorgolewski, KJ, Blair, RW, Appelhoff, S, Gau, R, Salo, T, Niso, G, Pernet, C, Phillips, C, Oostenveld, R, Gallezot, J-D, Carson, RE, Knudsen, GM, Innis, RB & Ganz, M 2021 'PET-BIDS, an extension to the brain imaging data structure for positron emission tomography' bioRxiv. https://doi.org/10.1101/2021.06.16.448390

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abstract = "The Brain Imaging Data Structure (BIDS) is a standard for organizing and describing neuroimaging datasets. It serves not only to facilitate the process of data sharing and aggregation, but also to simplify the application and development of new methods and software for working with neuroimaging data. Here, we present an extension of BIDS to include positron emission tomography (PET) data (PET-BIDS). We describe the PET-BIDS standard in detail and share several open-access datasets curated following PET-BIDS. Additionally, we highlight several tools which are already available for converting, validating and analyzing PET-BIDS datasets.Competing Interest StatementThe authors have declared no competing interest.",

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AU - Nørgaard, Martin

AU - Matheson, Granville J

AU - Hansen, Hanne D

AU - Thomas, Adam

AU - Searle, Graham

AU - Rizzo, Gaia

AU - Veronese, Mattia

AU - Giacomel, Alessio

AU - Yaqub, Maqsood

AU - Tonietto, Matteo

AU - Funck, Thomas

AU - Gillman, Ashley

AU - Boniface, Hugo

AU - Routier, Alexandre

AU - Dalenberg, Jelle R

AU - Betthauser, Tobey

AU - Feingold, Franklin

AU - Markiewicz, Christopher J

AU - Gorgolewski, Krzysztof J

AU - Blair, Ross W

AU - Appelhoff, Stefan

AU - Gau, Remi

AU - Salo, Taylor

AU - Niso, Guiomar

AU - Pernet, Cyril

AU - Phillips, Christophe

AU - Oostenveld, Robert

AU - Gallezot, Jean-Dominique

AU - Carson, Richard E

AU - Knudsen, Gitte M

AU - Innis, Robert B

AU - Ganz, Melanie

PY - 2021

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AB - The Brain Imaging Data Structure (BIDS) is a standard for organizing and describing neuroimaging datasets. It serves not only to facilitate the process of data sharing and aggregation, but also to simplify the application and development of new methods and software for working with neuroimaging data. Here, we present an extension of BIDS to include positron emission tomography (PET) data (PET-BIDS). We describe the PET-BIDS standard in detail and share several open-access datasets curated following PET-BIDS. Additionally, we highlight several tools which are already available for converting, validating and analyzing PET-BIDS datasets.Competing Interest StatementThe authors have declared no competing interest.

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