Proceedings of the EuBIC-MS 2020 Developers’ Meeting

Christopher Ashwood; Wout Bittremieux; Eric W. Deutsch; Nadezhda T. Doncheva; Viktoria Dorfer; Ralf Gabriels; Vladimir Gorshkov; Surya Gupta; Andrew R. Jones; Lukas Käll; Dominik Kopczynski; Lydie Lane; Ludwig Lautenbacher; Marc Legeay; Marie Locard-Paulet; Bart Mesuere; Yasset Perez-Riverol; Eugen Netz; Julianus Pfeuffer; Timo Sachsenberg; Renee Salz; Patroklos Samaras; Henning Schiebenhoefer; Tobias Schmidt; Veit Schwämmle; Alessio Soggiu; Julian Uszkoreit; Tim Van Den Bossche; Bart Van Puyvelde; Joeri Van Strien; Pieter Verschaffelt; Henry Webel; Sander Willems

doi:10.1016/j.euprot.2020.11.001

Proceedings of the EuBIC-MS 2020 Developers’ Meeting

Christopher Ashwood, Wout Bittremieux, Eric W. Deutsch, Nadezhda T. Doncheva, Viktoria Dorfer, Ralf Gabriels, Vladimir Gorshkov, Surya Gupta, Andrew R. Jones, Lukas Käll, Dominik Kopczynski, Lydie Lane, Ludwig Lautenbacher, Marc Legeay, Marie Locard-Paulet^*, Bart Mesuere, Yasset Perez-Riverol, Eugen Netz, Julianus Pfeuffer, Timo SachsenbergRenee Salz, Patroklos Samaras, Henning Schiebenhoefer, Tobias Schmidt, Veit Schwämmle, Alessio Soggiu, Julian Uszkoreit, Tim Van Den Bossche, Bart Van Puyvelde, Joeri Van Strien, Pieter Verschaffelt, Henry Webel, Sander Willems

^*Corresponding author af dette arbejde

Publikation: Bidrag til tidsskrift › Leder › Forskning

6 Citationer (Scopus)

Abstract

The 2020 European Bioinformatics Community for Mass Spectrometry (EuBIC-MS) Developers’ meeting was held from January 13^th to January 17^th 2020 in Nyborg, Denmark. Among the participants were scientists as well as developers working in the field of computational mass spectrometry (MS) and proteomics. The 4-day program was split between introductory keynote lectures and parallel hackathon sessions. During the latter, the participants developed bioinformatics tools and resources addressing outstanding needs in the community. The hackathons allowed less experienced participants to learn from more advanced computational MS experts, and to actively contribute to highly relevant research projects. We successfully produced several new tools that will be useful to the proteomics community by improving data analysis as well as facilitating future research. All keynote recordings are available on https://doi.org/10.5281/zenodo.3890181.

Originalsprog	Engelsk
Tidsskrift	EuPA Open Proteomics
Vol/bind	24
Sider (fra-til)	1-6
Antal sider	6
ISSN	2212-9685
DOI	https://doi.org/10.1016/j.euprot.2020.11.001
Status	Udgivet - 2020

Adgang til dokumentet

10.1016/j.euprot.2020.11.001

Citationsformater

Ashwood, C., Bittremieux, W., Deutsch, E. W., Doncheva, N. T., Dorfer, V., Gabriels, R., Gorshkov, V., Gupta, S., Jones, A. R., Käll, L., Kopczynski, D., Lane, L., Lautenbacher, L., Legeay, M., Locard-Paulet, M., Mesuere, B., Perez-Riverol, Y., Netz, E., Pfeuffer, J., ... Willems, S. (2020). Proceedings of the EuBIC-MS 2020 Developers’ Meeting. EuPA Open Proteomics, 24, 1-6. https://doi.org/10.1016/j.euprot.2020.11.001

Proceedings of the EuBIC-MS 2020 Developers’ Meeting. / Ashwood, Christopher; Bittremieux, Wout; Deutsch, Eric W.; Doncheva, Nadezhda T.; Dorfer, Viktoria; Gabriels, Ralf; Gorshkov, Vladimir; Gupta, Surya; Jones, Andrew R.; Käll, Lukas; Kopczynski, Dominik; Lane, Lydie; Lautenbacher, Ludwig; Legeay, Marc; Locard-Paulet, Marie; Mesuere, Bart; Perez-Riverol, Yasset; Netz, Eugen; Pfeuffer, Julianus; Sachsenberg, Timo; Salz, Renee; Samaras, Patroklos; Schiebenhoefer, Henning; Schmidt, Tobias; Schwämmle, Veit; Soggiu, Alessio; Uszkoreit, Julian; Van Den Bossche, Tim; Van Puyvelde, Bart; Van Strien, Joeri; Verschaffelt, Pieter; Webel, Henry; Willems, Sander.

I: EuPA Open Proteomics, Bind 24, 2020, s. 1-6.

Publikation: Bidrag til tidsskrift › Leder › Forskning

Ashwood, C, Bittremieux, W, Deutsch, EW, Doncheva, NT, Dorfer, V, Gabriels, R, Gorshkov, V, Gupta, S, Jones, AR, Käll, L, Kopczynski, D, Lane, L, Lautenbacher, L, Legeay, M, Locard-Paulet, M, Mesuere, B, Perez-Riverol, Y, Netz, E, Pfeuffer, J, Sachsenberg, T, Salz, R, Samaras, P, Schiebenhoefer, H, Schmidt, T, Schwämmle, V, Soggiu, A, Uszkoreit, J, Van Den Bossche, T, Van Puyvelde, B, Van Strien, J, Verschaffelt, P, Webel, H & Willems, S 2020, 'Proceedings of the EuBIC-MS 2020 Developers’ Meeting', EuPA Open Proteomics, bind 24, s. 1-6. https://doi.org/10.1016/j.euprot.2020.11.001

Ashwood, Christopher ; Bittremieux, Wout ; Deutsch, Eric W. ; Doncheva, Nadezhda T. ; Dorfer, Viktoria ; Gabriels, Ralf ; Gorshkov, Vladimir ; Gupta, Surya ; Jones, Andrew R. ; Käll, Lukas ; Kopczynski, Dominik ; Lane, Lydie ; Lautenbacher, Ludwig ; Legeay, Marc ; Locard-Paulet, Marie ; Mesuere, Bart ; Perez-Riverol, Yasset ; Netz, Eugen ; Pfeuffer, Julianus ; Sachsenberg, Timo ; Salz, Renee ; Samaras, Patroklos ; Schiebenhoefer, Henning ; Schmidt, Tobias ; Schwämmle, Veit ; Soggiu, Alessio ; Uszkoreit, Julian ; Van Den Bossche, Tim ; Van Puyvelde, Bart ; Van Strien, Joeri ; Verschaffelt, Pieter ; Webel, Henry ; Willems, Sander. / Proceedings of the EuBIC-MS 2020 Developers’ Meeting. I: EuPA Open Proteomics. 2020 ; Bind 24. s. 1-6.

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abstract = "The 2020 European Bioinformatics Community for Mass Spectrometry (EuBIC-MS) Developers{\textquoteright} meeting was held from January 13th to January 17th 2020 in Nyborg, Denmark. Among the participants were scientists as well as developers working in the field of computational mass spectrometry (MS) and proteomics. The 4-day program was split between introductory keynote lectures and parallel hackathon sessions. During the latter, the participants developed bioinformatics tools and resources addressing outstanding needs in the community. The hackathons allowed less experienced participants to learn from more advanced computational MS experts, and to actively contribute to highly relevant research projects. We successfully produced several new tools that will be useful to the proteomics community by improving data analysis as well as facilitating future research. All keynote recordings are available on https://doi.org/10.5281/zenodo.3890181.",

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AU - Gabriels, Ralf

AU - Gorshkov, Vladimir

AU - Gupta, Surya

AU - Jones, Andrew R.

AU - Käll, Lukas

AU - Kopczynski, Dominik

AU - Lane, Lydie

AU - Lautenbacher, Ludwig

AU - Legeay, Marc

AU - Locard-Paulet, Marie

AU - Mesuere, Bart

AU - Perez-Riverol, Yasset

AU - Netz, Eugen

AU - Pfeuffer, Julianus

AU - Sachsenberg, Timo

AU - Salz, Renee

AU - Samaras, Patroklos

AU - Schiebenhoefer, Henning

AU - Schmidt, Tobias

AU - Schwämmle, Veit

AU - Soggiu, Alessio

AU - Uszkoreit, Julian

AU - Van Den Bossche, Tim

AU - Van Puyvelde, Bart

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KW - Benchmark development

KW - Bioinformatics

KW - Computational mass spectrometry

KW - Functional annotations

KW - Mass spectrometry

KW - Metaproteomics

KW - Phosphoproteomics

KW - Predicted spectra

KW - Proteomics

KW - Proteomics graph networks

KW - Spectrum clustering

KW - XIC extraction

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