Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms

Daniel I. Speiser; M. Sabrina Pankey; Alexander K. Zaharoff; Barbara A. Battelle; Heather D. Bracken-Grissom; Jesse W. Breinholt; Seth M. Bybee; Thomas W. Cronin; Anders Lydik Garm; Annie R. Lindgren; Nipam H. Patel; Megan L. Porter; Meredith E. Protas; Ajna S. Rivera; Jeanne M. Serb; Kirk S. Zigler; Keith A. Crandall; Todd H. Oakley

doi:10.1186/s12859-014-0350-x

Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms

Daniel I. Speiser, M. Sabrina Pankey, Alexander K. Zaharoff, Barbara A. Battelle, Heather D. Bracken-Grissom, Jesse W. Breinholt, Seth M. Bybee, Thomas W. Cronin, Anders Lydik Garm, Annie R. Lindgren, Nipam H. Patel, Megan L. Porter, Meredith E. Protas, Ajna S. Rivera, Jeanne M. Serb, Kirk S. Zigler, Keith A. Crandall, Todd H. Oakley

Marine Biological Section

Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

61 Citationer (Scopus)

406 Downloads (Pure)

Originalsprog	Engelsk
Artikelnummer	350
Tidsskrift	B M C Bioinformatics
Vol/bind	15
Antal sider	12
ISSN	1471-2105
DOI	https://doi.org/10.1186/s12859-014-0350-x
Status	Udgivet - 2014

Adgang til dokumentet

10.1186/s12859-014-0350-x

Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organismsForlagets udgivne version, 925 KB

Citationsformater

Speiser, D. I., Pankey, M. S., Zaharoff, A. K., Battelle, B. A., Bracken-Grissom, H. D., Breinholt, J. W., Bybee, S. M., Cronin, T. W., Garm, A. L., Lindgren, A. R., Patel, N. H., Porter, M. L., Protas, M. E., Rivera, A. S., Serb, J. M., Zigler, K. S., Crandall, K. A., & Oakley, T. H. (2014). Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms. B M C Bioinformatics, 15, [350]. https://doi.org/10.1186/s12859-014-0350-x

Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms. / Speiser, Daniel I.; Pankey, M. Sabrina; Zaharoff, Alexander K.; Battelle, Barbara A.; Bracken-Grissom, Heather D.; Breinholt, Jesse W.; Bybee, Seth M.; Cronin, Thomas W.; Garm, Anders Lydik; Lindgren, Annie R.; Patel, Nipam H.; Porter, Megan L.; Protas, Meredith E.; Rivera, Ajna S.; Serb, Jeanne M.; Zigler, Kirk S.; Crandall, Keith A.; Oakley, Todd H.

I: B M C Bioinformatics, Bind 15, 350, 2014.

Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

Speiser, DI, Pankey, MS, Zaharoff, AK, Battelle, BA, Bracken-Grissom, HD, Breinholt, JW, Bybee, SM, Cronin, TW, Garm, AL, Lindgren, AR, Patel, NH, Porter, ML, Protas, ME, Rivera, AS, Serb, JM, Zigler, KS, Crandall, KA & Oakley, TH 2014, 'Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms', B M C Bioinformatics, bind 15, 350. https://doi.org/10.1186/s12859-014-0350-x

Speiser, Daniel I. ; Pankey, M. Sabrina ; Zaharoff, Alexander K. ; Battelle, Barbara A. ; Bracken-Grissom, Heather D. ; Breinholt, Jesse W. ; Bybee, Seth M. ; Cronin, Thomas W. ; Garm, Anders Lydik ; Lindgren, Annie R. ; Patel, Nipam H. ; Porter, Megan L. ; Protas, Meredith E. ; Rivera, Ajna S. ; Serb, Jeanne M. ; Zigler, Kirk S. ; Crandall, Keith A. ; Oakley, Todd H. / Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms. I: B M C Bioinformatics. 2014 ; Bind 15.

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author = "Speiser, {Daniel I.} and Pankey, {M. Sabrina} and Zaharoff, {Alexander K.} and Battelle, {Barbara A.} and Bracken-Grissom, {Heather D.} and Breinholt, {Jesse W.} and Bybee, {Seth M.} and Cronin, {Thomas W.} and Garm, {Anders Lydik} and Lindgren, {Annie R.} and Patel, {Nipam H.} and Porter, {Megan L.} and Protas, {Meredith E.} and Rivera, {Ajna S.} and Serb, {Jeanne M.} and Zigler, {Kirk S.} and Crandall, {Keith A.} and Oakley, {Todd H.}",

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AU - Speiser, Daniel I.

AU - Pankey, M. Sabrina

AU - Zaharoff, Alexander K.

AU - Battelle, Barbara A.

AU - Bracken-Grissom, Heather D.

AU - Breinholt, Jesse W.

AU - Bybee, Seth M.

AU - Cronin, Thomas W.

AU - Garm, Anders Lydik

AU - Lindgren, Annie R.

AU - Patel, Nipam H.

AU - Porter, Megan L.

AU - Protas, Meredith E.

AU - Rivera, Ajna S.

AU - Serb, Jeanne M.

AU - Zigler, Kirk S.

AU - Crandall, Keith A.

AU - Oakley, Todd H.

PY - 2014

Y1 - 2014

KW - Bioinformatics

KW - Eyes

KW - Evolution

KW - Galaxy

KW - Next-generation sequence analysis

KW - Orthology

KW - Phototransduction

KW - Transcriptomes

KW - Vision

U2 - 10.1186/s12859-014-0350-x

DO - 10.1186/s12859-014-0350-x

M3 - Journal article

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VL - 15

JO - B M C Bioinformatics

JF - B M C Bioinformatics

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