Cell and Neurobiology

2024

BeetleAtlas: An Ontogenetic and Tissue-specific Transcriptomic Atlas of the Red Flour Beetle Tribolium castaneum

Leader, D. P., Naseem, M. T. & Halberg, K. V., 2024, In: Journal of Molecular Biology. 436, 17, 8 p., 168520.

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Drosophila activins adapt gut size to food intake and promote regenerative growth

Christensen, C. F., Laurichesse, Q., Loudhaief, R., Colombani, J. & Andersen, D. S., 2024, In: Nature Communications. 15, 1, 12 p., 273.

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1 Citation (Scopus)

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Drosophila cytokine GBP2 exerts immune responses and regulates GBP1 expression through GPCR receptor Mthl10

Ono, M., Matsumura, T., Sung, E. J., Koyama, T., Ochiai, M., Shears, S. B. & Hayakawa, Y., 2024, In: Insect Biochemistry and Molecular Biology. 167, 7 p., 104086.

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H9N2 influenza A viruses found to be enzootic in Punjab Pakistan's bird markets with evidence of human H9N2 nasal colonization

Ali, S., Robie, E. R., Saeed, U., Jaffar, G., Bailey, E. S., Marushchak, L. V., Kreditor, B. E., Pulscher, L. A., Rubrum, A. M., Webby, R. J. & Gray, G. C., 2024, In: International Journal of Infectious Diseases. 146, 4 p., 107146.

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LGR signaling mediates muscle-adipose tissue crosstalk and protects against diet-induced insulin resistance

Kubrak, O., Jørgensen, A. F., Koyama, T., Lassen, M., Nagy, S., Hald, J., Mazzoni, G., Madsen, D., Hansen, J. B., Larsen, M. R., Texada, M. J., Hansen, J. L., Halberg, K. V. & Rewitz, K., 2024, In: Nature Communications. 15, 1, 22 p., 6126.

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Mechanisms of Systemic Osmoregulation in Insects

Halberg, K. V. & Denholm, B., 2024, In: Annual Review of Entomology. 69, p. 415-438 24 p.

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7 Citations (Scopus)

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Organismal and cellular growth control by cholesterol as a nutritronal signal

Lassen, M., 2024, Department of Biology, Faculty of Science, University of Copenhagen. 146 p.

Research output: Book/Report › Ph.D. thesis › Research

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Protocol for genomic recombineering in Yersinia ruckeri using CRISPR Cas12a coupled with the λ Red system

Ejaz, R. N., Taylor, N. M. I. & Steiner-Rebrova, E. M., 2024, In: STAR Protocols. 5, 2, 17 p., 103014.

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The tick Ixodes scapularis has five different GPCRs specifically activated by ACP (adipokinetic hormone/corazonin-related peptide)

Hauser, F., Stebegg, M., Al-Ribaty, T., Petersen, L. B., Møller, M., Drag, M. H., Sigurdsson, H. H., Vilhelm, M. J., Thygesen, G. & Grimmelikhuijzen, C. J. P., 2024, In: Biochemical and Biophysical Research Communications. 717, 7 p., 149992.

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Wengen's hidden powers: ROS triggers a TNFR-dependent tissue regenerative pathway in Drosophila

Andersen, D. S. & Colombani, J., 2024, In: The EMBO Journal. 43, 17, p. 3550-3552 3 p.

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2023

A corazonin G protein-coupled receptor gene in the tick Ixodes scapularis yields two splice variants, each coding for a specific corazonin receptor

Hauser, F., Pallesen, M., Lehnhoff, J., Li, S., Lind, A. & Grimmelikhuijzen, C. J. P., 2023, In: Biochemical and Biophysical Research Communications. 666, p. 162-169 8 p.

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Administration of vitamin E and C enhances immunological and biochemical responses against toxicity of silver nanoparticles in grass carp (Ctenopharyngodon idella)

Iqbal, K. J., Majeed, H., Iqbal, K. J., Asghar, M., Azmat, H., Fatima, M., Khan, N., Baboo, I., Tehseen, A., Ali, W., Saeed, U., Khizar, A., Fatima, A., Nisa, S. & Davies, S. J., 2023, In: PLoS ONE. 18, 4, 21 p., e0284285.

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1 Citation (Scopus)

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Bacillus thuringiensis toxins divert progenitor cells toward enteroendocrine fate by decreasing cell adhesion with intestinal stem cells in Drosophila

Jneid, R., Loudhaief, R., Zucchini-Pascal, N., Nawrot-Esposito, M. P., Fichant, A., Rousset, R., Bonis, M., Osman, D. & Gallet, A., 2023, In: eLife. 12, 34 p., e80179.

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Cloning and deorphanization of three inotocin (insect oxytocin/vasopressin-like) receptors and their ligand from the tick Ixodes scapularis

Hauser, F., Al-Ribaty, T., Stebegg, M., Thygesen, G. & Grimmelikhuijzen, C. J. P., 2023, In: Biochemical and Biophysical Research Communications. 680, p. 34-41 8 p.

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1 Citation (Scopus)

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Compromised junctional integrity phenocopies age-dependent renal dysfunction in Drosophila Snakeskin mutants

Dornan, A. J., Halberg, K. V., Beuter, L. K., Davies, S. A. & Dow, J. A. T., 2023, In: Journal of Cell Science. 136, 19, 15 p., jcs261118.

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3 Citations (Scopus)

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Determination of heavy metals (Pb, Cr, As, Hg, and Cd) into the body organs of selected fish, water, sediment, and soil samples from Head Punjnad and Head Taunsa, Punjab, Pakistan

Iqbal, K. J., Khan, N., Fatima, M., Lashari, M. H., Asad, M., Ashraf, A., Fatima, H., Majeed, H., Baboo, I., Iqbal, K. J., Asghar, M., Saeed, U., Ali, W., Nazir, S., Bano, S. & Tanveer, A., 2023, In: PLoS ONE. 18, 9, 10 p., e0288163.

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2 Citations (Scopus)

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Drosophila TNF/TNFRs: At the crossroad between metabolism, immunity, and tissue homeostasis

Colombani, J. & Andersen, D. S., 2023, In: FEBS Letters. 597, 19, p. 2416-2432 17 p.

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6 Citations (Scopus)

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Managing fuels and fluids: Network integration of osmoregulatory and metabolic hormonal circuits in the polymodal control of homeostasis in insects

Koyama, T., Rana, D. W. & Halberg, K. V., 2023, In: BioEssays. 45, 9, 13 p.

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NHA1 is a cation/proton antiporter essential for the water-conserving functions of the rectal complex in Tribolium castaneum.

Naseem, M. T., Beaven, R., Koyama, T., Naz, S., Su, S-Y., Leader, D. P., A Klaerke, D., Calloe, K., Denholm, B. & Halberg, K. V., 2023, In: Proceedings of the National Academy of Sciences of the United States of America. 120, 13, 11 p., e2217084120.

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9 Citations (Scopus)

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The Drosophila tumor necrosis factor receptor, Wengen, couples energy expenditure with gut immunity

Loudhaief, R., Jneid, R., Christensen, C. F., Mackay, D. J., Andersen, D. S. & Colombani, J., 2023, In: Science Advances. 9, 23, 15 p., eadd4977.

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The insect cryptonephridial complex

Beaven, R., Halberg, K. V. & Denholm, B., 2023, In: Current Biology. 33, 14, p. R748-R749 2 p.

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2022

A Dilp8-dependent time window ensures tissue size adjustment in Drosophila

Blanco-Obregon, D., Marzkioui, K. E., Brutscher, F., Kapoor, V., Valzania, L., Andersen, D. S., Colombani, J., Narasimha, S., McCusker, D., Léopold, P. & Boulan, L., 2022, In: Nature Communications. 13, 10 p., 5629.

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A DNA barcode survey of insect biodiversity in Pakistan

Ashfaq, M., Khan, A. M., Rasool, A., Akhtar, S., Nazir, N., Ahmed, N., Manzoor, F., Sones, J., Perez, K., Sarwar, G., Khan, A. A., Akhter, M., Saeed, S., Sultana, R., Tahir, H. M., Rafi, M. A., Iftikhar, R., Naseem, M. T., Masood, M., Tufail, M. & 8 others, Kumar, S., Afzal, S., McKeown, J., Samejo, A. A., Khaliq, I., D'Souza, M. L., Mansoor, S. & Hebert, P. D. N., 2022, In: PeerJ. 10, 19 p., e13267.

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8 Citations (Scopus)

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A gut-derived hormone suppresses sugar appetite and regulates food choice in Drosophila

Malita, A., Kubrak, O., Koyama, T., Ahrentløv, N., Texada, M. J., Nagy, S., Halberg, K. V. & Rewitz, K., 2022, In: Nature Metabolism. 4, 11, p. 1532-1550 19 p.

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20 Citations (Scopus)

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Canalized gene expression during development mediates caste differentiation in ants

Qiu, B., Dai, X., Li, P., Larsen, R. S., Li, R., Price, A. L., Ding, G., Texada, M. J., Zhang, X., Zuo, D., Gao, Q., Jiang, W., Wen, T., Pontieri, L., Guo, C., Rewitz, K., Li, Q., Liu, W., Boomsma, J. J. & Zhang, G., 2022, In: Nature Ecology and Evolution. 6, 11, p. 1753-1765

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12 Citations (Scopus)

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Ecdysone coordinates plastic growth with robust pattern in the developing wing

Alves, A. N., Oliveira, M. M., Koyama, T., Shingleton, A. & Mirth, C. K., Mar 2022, In: eLife. 11, 24 p., e72666.

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8 Citations (Scopus)

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Editorial: Hormones and Life History Strategies

McMenamin, S., Shkil, F. & Koyama, T., 2022, In: Frontiers in Ecology and Evolution. 10, 3 p., 838555.

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2 Citations (Scopus)

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Genetic Screen for Secreted Factors Released from the Intestinal Stem Cell Niche in Drosophila melanogaster Identifies Novel Roles of the Activin/TGF-β Signaling Pathway in Adult Intestinal Homeostasis and Adaptive Growth

Christensen, C. F., 2022, Department of Biology, Faculty of Science, University of Copenhagen. 120 p.

Research output: Book/Report › Ph.D. thesis › Research

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Insulin signaling couples growth and early maturation to cholesterol intake in Drosophila

Texada, M. J., Lassen, M., Pedersen, L. H., Koyama, T., Malita, A. & Rewitz, K., 2022, In: Current Biology. 32, 7, p. 1548-1562.e6

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11 Citations (Scopus)

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Reconstructing the Origins of the Somatostatin and Allatostatin-C Signaling Systems Using the Accelerated Evolution of Biodiverse Cone Snail Toxins

Koch, T. L., Ramiro, I. B. L., Flórez Salcedo, P., Engholm, E., Jensen, K. J., Chase, K., Olivera, B. M., Bjørn-Yoshimoto, W. E., Safavi-hemami, H. & True, J. (ed.), 2022, In: Molecular Biology and Evolution. 39, 4, 20 p., msac075.

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Review: The evolution of peptidergic signaling in Cnidaria and Placozoa, including a comparison with Bilateria

Hauser, F., Koch, T. L. & Grimmelikhuijzen, C. J. P., Sep 2022, In: Frontiers in Endocrinology. 13, 18 p., 973862.

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9 Citations (Scopus)

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The gut hormone Allatostatin C/Somatostatin regulates food intake and metabolic homeostasis under nutrient stress

Kubrak, O., Koyama, T., Ahrentloev, N., Jensen, L., Malita, A., Naseem, M. T., Lassen, M., Nagy, S., Texada, M., Halberg, K. & Rewitz, K., 2022, In: Nature Communications. 13, 17 p., 692.

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2021

An evolutionary genomics view on neuropeptide genes in Hydrozoa and Endocnidozoa (Myxozoa)

Koch, T. L., Hauser, F. & Grimmelikhuijzen, C. J. P., 2021, In: BMC Genomics. 22, 22 p., 862.

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A nutrient-responsive hormonal circuit mediates an inter-tissue program regulating metabolic homeostasis in adult Drosophila

Koyama, T., Terhzaz, S., Naseem, M. T., Nagy, S., Rewitz, K., Dow, J. A. T., Davies, S. A. & Halberg, K. V., 2021, In: Nature Communications. 12, 19 p., 5178.

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16 Citations (Scopus)

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A unique Malpighian tubule architecture in Tribolium castaneum informs the evolutionary origins of systemic osmoregulation in beetles

Koyama, T., Naseem, M. T., Kolosov, D., Vo, C. T., Mahon, D., Jakobsen, A. S. S., Jensen, R. L., Denholm, B., O'Donnell, M. & Halberg, K. V., 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 14, 12 p., e2023314118.

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12 Citations (Scopus)

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Co-option of immune effectors by the hormonal signalling system triggering metamorphosis in Drosophila melanogaster

Nunes, C., Koyama, T. & Sucena, É., 2021, In: PLOS Genetics. 17, 11, 24 p., e1009916.

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10 Citations (Scopus)

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Drosophila TNFRs Grindelwald and Wengen bind Eiger with different affinities and promote distinct cellular functions

Palmerini, V., Monzani, S., Laurichesse, Q., Loudhaief, R., Mari, S., Cecatiello, V., Olieric, V., Pasqualato, S., Colombani, J., Andersen, D. S. & Mapelli, M., 2021, In: Nature Communications. 12, 12 p., 2070.

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19 Citations (Scopus)

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Ecdysone quantification from whole body samples of drosophila melanogaster larvae

Koyama, T. & Mirth, C. K., 5 Feb 2021, In: Bio-protocol. 11, 3, e3915.

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2 Citations (Scopus)

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Endocrine regulation of immunity in insects

Nunes, C., Sucena, É. & Koyama, T., 2021, In: FEBS Journal. 288, 13, p. 3928-3947 20 p.

Research output: Contribution to journal › Review › Research › peer-review

38 Citations (Scopus)

Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)

Klionsky, D. J., Abdel-Aziz, A. K., Abdelfatah, S., Abdellatif, M., Abdoli, A., Abel, S., Abeliovich, H., Abildgaard, M. H., Abudu, Y. P., Acevedo-Arozena, A., Adamopoulos, I. E., Adeli, K., Adolph, T. E., Adornetto, A., Aflaki, E., Agam, G., Agarwal, A., Aggarwal, B. B., Agnello, M., Agostinis, P. & 2,908 others, Agrewala, J. N., Agrotis, A., Aguilar, P. V., Ahmad, S. T., Ahmed, Z. M., Ahumada-Castro, U., Aits, S., Aizawa, S., Akkoc, Y., Akoumianaki, T., Akpinar, H. A., Al-Abd, A. M., Al-Akra, L., Al-Gharaibeh, A., Alaoui-Jamali, M. A., Alberti, S., Alcocer-Gómez, E., Alessandri, C., Ali, M., Alim Al-Bari, M. A., Aliwaini, S., Alizadeh, J., Almacellas, E., Almasan, A., Alonso, A., Alonso, G. D., Altan-Bonnet, N., Altieri, D. C., Álvarez, É. M. C., Alves, S., Alves da Costa, C., Alzaharna, M. M., Amadio, M., Amantini, C., Amaral, C., Ambrosio, S., Amer, A. O., Ammanathan, V., An, Z., Andersen, S. U., Andrabi, S. A., Andrade-Silva, M., Andres, A. M., Angelini, S., Ann, D., Anozie, U. C., Ansari, M. Y., Antas, P., Antebi, A., Antón, Z., Anwar, T., Apetoh, L., Apostolova, N., Araki, T., Araki, Y., Arasaki, K., Araújo, W. L., Araya, J., Arden, C., Arévalo, M-A., Arguelles, S., Arias, E., Arikkath, J., Arimoto, H., Ariosa, A. R., Armstrong-James, D., Arnauné-Pelloquin, L., Aroca, A., Arroyo, D. S., Arsov, I., Artero, R., Asaro, D. M. L., Aschner, M., Ashrafizadeh, M., Ashur-Fabian, O., Atanasov, A. G., Au, A. K., Auberger, P., Auner, H. W., Aurelian, L., Autelli, R., Avagliano, L., Ávalos, Y., Aveic, S., Aveleira, C. A., Avin-Wittenberg, T., Aydin, Y., Ayton, S., Ayyadevara, S., Azzopardi, M., Baba, M., Backer, J. M., Backues, S. K., Bae, D-H., Bae, O-N., Bae, S. H., Baehrecke, E. H., Baek, A., Baek, S-H., Baek, S. H., Bagetta, G., Bagniewska-Zadworna, A., Bai, H., Bai, J., Bai, X., Bai, Y., Bairagi, N., Baksi, S., Balbi, T., Baldari, C. T., Balduini, W., Ballabio, A., Ballester, M., Balazadeh, S., Balzan, R., Bandopadhyay, R., Banerjee, S., Banerjee, S., Bánréti, Á., Bao, Y., Baptista, M. S., Baracca, A., Barbati, C., Bargiela, A., Barilà, D., Barlow, P. G., Barmada, S. J., Barreiro, E., Barreto, G. E., Bartek, J., Bartel, B., Bartolome, A., Barve, G. R., Basagoudanavar, S. H., Bassham, D. C., Bast, R. C., Basu, A., Batoko, H., Batten, I., Baulieu, E. E., Baumgarner, B. L., Bayry, J., Beale, R., Beau, I., Beaumatin, F., Bechara, L. R. G., Beck, G. R., Beers, M. F., Begun, J., Behrends, C., Behrens, G. M. N., Bei, R., Bejarano, E., Bel, S., Behl, C., Belaid, A., Belgareh-Touzé, N., Bellarosa, C., Belleudi, F., Belló Pérez, M., Bello-Morales, R., Beltran, J. S. D. O., Beltran, S., Benbrook, D. M., Bendorius, M., Benitez, B. A., Benito-Cuesta, I., Bensalem, J., Berchtold, M. W., Berezowska, S., Bergamaschi, D., Bergami, M., Bergmann, A., Berliocchi, L., Berlioz-Torrent, C., Bernard, A., Berthoux, L., Besirli, C. G., Besteiro, S., Betin, V. M., Beyaert, R., Bezbradica, J. S., Bhaskar, K., Bhatia-Kissova, I., Bhattacharya, R., Bhattacharya, S., Bhattacharyya, S., Bhuiyan, M. S., Bhutia, S. K., Bi, L., Bi, X., Biden, T. J., Bijian, K., Billes, V. A., Binart, N., Bincoletto, C., Birgisdottir, A. B., Bjorkoy, G., Blanco, G., Blas-Garcia, A., Blasiak, J., Blomgran, R., Blomgren, K., Blum, J. S., Boada-Romero, E., Boban, M., Boesze-Battaglia, K., Boeuf, P., Boland, B., Bomont, P., Bonaldo, P., Bonam, S. R., Bonfili, L., Bonifacino, J. S., Boone, B. A., Bootman, M. D., Bordi, M., Borner, C., Bornhauser, B. C., Borthakur, G., Bosch, J., Bose, S., Botana, L. M., Botas, J., Boulanger, C. M., Boulton, M. E., Bourdenx, M., Bourgeois, B., Bourke, N. M., Bousquet, G., Boya, P., Bozhkov, P. V., Bozi, L. H. M., Bozkurt, T. O., Brackney, D. E., Brandts, C. H., Braun, R. J., Braus, G. H., Bravo-Sagua, R., Bravo-San Pedro, J. M., Brest, P., Bringer, M-A., Briones-Herrera, A., Broaddus, V. C., Brodersen, P., Brodsky, J. L., Brody, S. L., Bronson, P. G., Bronstein, J. M., Brown, C. N., Brown, R. E., Brum, P. C., Brumell, J. H., Brunetti-Pierri, N., Bruno, D., Bryson-Richardson, R. J., Bucci, C., Buchrieser, C., Bueno, M., Buitrago-Molina, L. E., Buraschi, S., Buch, S., Buchan, J. R., Buckingham, E. M., Budak, H., Budini, M., Bultynck, G., Burada, F., Burgoyne, J. R., Burón, M. I., Bustos, V., Büttner, S., Butturini, E., Byrd, A., Cabas, I., Cabrera-Benitez, S., Cadwell, K., Cai, J., Cai, L., Cai, Q., Cairó, M., Calbet, J. A., Caldwell, G. A., Caldwell, K. A., Call, J. A., Calvani, R., Calvo, A. C., Calvo-Rubio Barrera, M., Camara, N. O. S., Camonis, J. H., Camougrand, N., Campanella, M., Campbell, E. M., Campbell-Valois, F-X., Campello, S., Campesi, I., Campos, J. C., Camuzard, O., Cancino, J., Candido de Almeida, D., Canesi, L., Caniggia, I., Canonico, B., Cantí, C., Cao, B., Caraglia, M., Caramés, B., Carchman, E. H., Cardenal-Muñoz, E., Cardenas, C., Cardenas, L., Cardoso, S. M., Carew, J. S., Carle, G. F., Carleton, G., Carloni, S., Carmona-Gutierrez, D., Carneiro, L. A., Carnevali, O., Carosi, J. M., Carra, S., Carrier, A., Carrier, L., Carroll, B., Carter, A. B., Carvalho, A. N., Casanova, M., Casas, C., Casas, J., Cassioli, C., Castillo, E. F., Castillo, K., Castillo-Lluva, S., Castoldi, F., Castori, M., Castro, A. F., Castro-Caldas, M., Castro-Hernandez, J., Castro-Obregon, S., Catz, S. D., Cavadas, C., Cavaliere, F., Cavallini, G., Cavinato, M., Cayuela, M. L., Cebollada Rica, P., Cecarini, V., Cecconi, F., Cechowska-Pasko, M., Cenci, S., Ceperuelo-Mallafré, V., Cerqueira, J. J., Cerutti, J. M., Cervia, D., Cetintas, V. B., Cetrullo, S., Chae, H-J., Chagin, A. S., Chai, C-Y., Chakrabarti, G., Chakrabarti, O., Chakraborty, T., Chakraborty, T., Chami, M., Chamilos, G., Chan, D. W., Chan, E. Y. W., Chan, E. D., Chan, H. Y. E., Chan, H. H., Chan, H., Chan, M. T. V., Chan, Y. S., Chandra, P. 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Koch, T. L. & Grimmelikhuijzen, C. J. P., 2020, In: BMC Genomics. 21, 21 p., 666.

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Analysis of genes within the schizophrenia-linked 22q11.2 deletion identifies interaction of night owl/LZTR1 and NF1 in GABAergic sleep control

Maurer, G. W., Malita, A., Nagy, S., Koyama, T., Werge, T. M., Halberg, K. A., Texada, M. J. & Rewitz, K., 2020, In: PLOS Genetics. 16, 4, 31 p., e1008727.

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Distinct nutritional and endocrine regulation of prothoracic gland activities underlies divergent life history strategies in Manduca sexta and Drosophila melanogaster

Xu, L. C., Nunes, C., Wang, V. R., Saito, A., Chen, T., Basak, P., Chang, J. J., Koyama, T. & Suzuki, Y., 2020, In: Insect Biochemistry and Molecular Biology. 119, 13 p., 103335.

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Mechanism of threshold size assessment: Metamorphosis is triggered by the TGF-beta/Activin ligand Myoglianin

He, L. L., Shin, S. H., Wang, Z., Yuan, I., Weschler, R., Chiou, A., Koyama, T., Nijhout, H. F. & Suzuki, Y., 2020, In: Insect Biochemistry and Molecular Biology. 126, 12 p., 103452.

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