Disease Systems Biology Program

Research output

Research output per year 2007 2017 2018 2019 2024

• 349 Journal article
• 14 Comment/debate
• 14 Review
• 12 Book chapter
• 32 More
  • 12 Conference abstract in journal
  • 9 Letter
  • 4 Conference article
  • 4 Editorial
  • 2 Preprint
  • 1 Paper

Research output per year

Research output per year

Search results

• 2019

  A Guide to Dictionary-Based Text Mining

  Cook, H. V. & Jensen, L. J., 2019, Bioinformatics and Drug Discovery. Larson, R. S. & Oprea, T. I. (eds.). 3 ed. Humana Press, Vol. 1939. p. 73-89 17 p. (Methods in Molecular Biology).

  Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
  18 Citations (Scopus)

• Combing the Hairball: Improving Visualization of miRNA-Target Interaction Networks

  Russo, F., Hu, J. X., Romero Herrera, J. A. & Brunak, S., 2019, MicroRNA Target Identification: Methods and Protocols. Laganà, A. (ed.). Humana Press, p. 279-289 11 p. (Methods in Molecular Biology, Vol. 1970).

  Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

• Identification of Disease-miRNA Networks Across Different Cancer Types Using SWIM

  Fiscon, G., Conte, F., Farina, L., Pellegrini, M., Russo, F. & Paci, P., 2019, MicroRNA Target Identification: Methods and Protocols. Laganà, A. (ed.). Humana Press, p. 169-181 13 p. (Methods in Molecular Biology, Vol. 1970).

  Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
  8 Citations (Scopus)
• 2018

  An Integrative Approach to Virus-Host Protein-Protein Interactions

  Cook, H. V. & Jensen, L. J., 2018, Computational Cell Biology. von Stechow, L. & Delgado, A. S. (eds.). Humana Press, p. 175-196 22 p. (Methods in Molecular Biology, Vol. 1819).

  Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
  4 Citations (Scopus)

• Interplay Between Long Noncoding RNAs and MicroRNAs in Cancer

  Russo, F., Fiscon, G., Conte, F., Rizzo, M., Paci, P. & Pellegrini, M., 2018, Computational Cell Biology. von Stechow, L. & Delgado, A. S. (eds.). Humana Press, p. 75-92 18 p. (Methods in Molecular Biology, Vol. 1819).

  Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
  36 Citations (Scopus)

• The Interplay of Non-coding RNAs and X Chromosome Inactivation in Human Disease

  Russo, F., De Masi, F., Brunak, S. & Belling, K. G., 2018, Systems Biology. Rajewsky, N., Jurga, S. & Barciszewski, J. (eds.). Springer, p. 229-238 (RNA Technologies).

  Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
• 2016

  From Phosphosites to Kinases

  Munk, S., Refsgaard, J. C., Olsen, J. V. & Jensen, L. J., 2016, Phospho-Proteomics: Methods and Protocols. Stechow, L. V. (ed.). Springer, Vol. 1355. p. 307-21 15 p. (Methods in molecular biology (Clifton, N.J.)).

  Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
  20 Citations (Scopus)

• Search Databases and Statistics: Pitfalls and Best Practices in Phosphoproteomics

  Refsgaard, J. C., Munk, S. & Jensen, L. J., 2016, Phospho-Proteomics: Methods and Protocols. Stechow, L. V. (ed.). Springer Publishing Company, Vol. 1355. p. 323-39 17 p. (Methods in molecular biology (Clifton, N.J.)).

  Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
  4 Citations (Scopus)
• 2015

  Computational design of artificial RNA molecules for gene regulation

  Laganà, A., Veneziano, D., Russo, F., Pulvirenti, A., Giugno, R., Croce, C. M. & Ferro, A., 10 Jan 2015, RNA Bioinformatics. Springer New York LLC, p. 393-412 20 p. (Methods in Molecular Biology).

  Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
  25 Citations (Scopus)

• Protein-Protein Interaction Databases

  Szklarczyk, D. & Jensen, L. J., 2015, Protein-Protein Interactions: Methods and Applications. Meyerkord, C. L. & Fu, H. (eds.). 2 ed. New York: Springer Publishing Company, Vol. 1278. p. 39-56 18 p. (Methods in Molecular Biology, Vol. 1278).

  Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
  39 Citations (Scopus)
• 2009

  Homologous and non-homologous sequence methods for assigning protein function

  Yeats, C., orengo, C., Veuthey, A. L., Boeckmann, B., Jensen, L. J., Valencia, A., Rausell, A. & Bork, P., 2009, Modern Genome Annotation: The BioSapien Network. Springer Publishing Company, p. 213-238

  Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

• Protein-protein interactions: analysis and prediction

  Frishman, D., Albert, M., Blankenburg, H., Bork, P., Harrington, E. D., Hermjakob, H., Jensen, L. J., Juan, D. A., Pagel, P., Schachter, V. & Valencia, A., 2009, Modern Genome Annotation: The BioSapien Network. Springer Publishing Company, p. 353-410 (Modern Genome Annotation: The BioSapiens network).

  Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research