Amin Doostmohammadi

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• 2024

  Active Particles Knead Three-Dimensional Gels into Porous Structures

  Pedersen, M. C., Mukherjee, S., Doostmohammadi, A., Mondal, C. & Thijssen, K., 26 Nov 2024, In: Physical Review Letters. 133, 22, 7 p., 228301.

  Research output: Contribution to journal › Letter › Research › peer-review

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• Filopodia: integrating cellular functions with theoretical models

  Ruhoff, V. T., Leijnse, N., Doostmohammadi, A. & Bendix, P. M., 2024, (Accepted/In press) In: Trends in Cell Biology.

  Research output: Contribution to journal › Review › Research › peer-review

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• Periodic orbits, pair nucleation, and unbinding of active nematic defects on cones

  Vafa, F., Nelson, D. R. & Doostmohammadi, A., 7 Jun 2024, In: Physical Review E. 109, 6, 15 p., 064606.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  2 Citations (Scopus)

  5 Downloads (Pure)

• Short-range correlation of stress chains near solid-to-liquid transition in active monolayers

  Monfared, S., Ravichandran, G., Andrade, J. E. & Doostmohammadi, A., 8 May 2024, In: Journal of the Royal Society Interface. 21, 214, 8 p., 20240022.

  Research output: Contribution to journal › Journal article › Research › peer-review

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• Spontaneous self-constraint in active nematic flows

  Head, L. C., Doré, C., Keogh, R. R., Bonn, L., Negro, G., Marenduzzo, D., Doostmohammadi, A., Thijssen, K., López-león, T. & Shendruk, T. N., 18 Jan 2024, In: Nature Physics. 20, 3, p. 492-500 8 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  12 Citations (Scopus)

  13 Downloads (Pure)
• 2023

  Active topological defect absorption by a curvature singularity

  Vafa, F., Nelson, D. R. & Doostmohammadi, A., 20 Jul 2023, In: Journal of Physics Condensed Matter. 35, 42, 17 p., 425101.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  1 Citation (Scopus)

  26 Downloads (Pure)

• Collective rotational motion of freely expanding T84 epithelial cell colonies

  Ascione, F., Caserta, S., Esposito, S., Rachela, V. V., Maiuri, L., Nejad, M. R., Doostmohammadi, A., Yeomans, J. M. & Guido, S., 22 Feb 2023, In: Journal of the Royal Society Interface. 20, 199, 12 p., 20220719.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  6 Citations (Scopus)

  26 Downloads (Pure)

• Editorial: Active and Intelligent Living Matter: from Fundamentals to Applications

  Doostmohammadi, A., Mazza, M. G., Shendruk, T. N. & Stark, H., 12 Jun 2023, In: Frontiers in Physics. 11, 2 p., 1231716.

  Research output: Contribution to journal › Editorial › Research › peer-review

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  19 Downloads (Pure)

• Elasticity tunes mechanical stress localization around active topological defects

  Bonn, L. F., Ardaševa, A. & Doostmohammadi, A., 28 Nov 2023, In: Soft Matter. 20, 1, p. 115-123 9 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  2 Downloads (Pure)

• Mechanical basis and topological routes to cell elimination

  Monfared, S., Ravichandran, G., Andrade, J. & Doostmohammadi, A., 18 Apr 2023, In: eLife. 12, 20 p., 82435.

  Research output: Contribution to journal › Journal article › Research › peer-review

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• Spontaneous flows and dynamics of full-integer topological defects in polar active matter

  Rønning, J., Renaud, J., Doostmohammadi, A. & Angheluta, L., 21 Jul 2023, In: Soft Matter. 15 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

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• Symmetry-restoring crossover from defect-free to defect-laden turbulence in polar active matter

  Andersen, B. H., Renaud-Mornant, J., Rønning, J., Angheluta, L. & Doostmohammadi, A., 14 Jun 2023, In: Physical Review Fluids. 8, 14 p., 063101.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  3 Citations (Scopus)

  29 Downloads (Pure)
• 2022

  Bridging microscopic cell dynamics to nematohydrodynamics of cell monolayers

  Ardaseva, A., Mueller, R. & Doostmohammadi, A., 29 Jun 2022, In: Soft Matter. 18, 25, p. 4737-4746 10 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

• Distinct impacts of polar and nematic self-propulsion on active unjamming

  Venkatesh, V., Mondal, C. & Doostmohammadi, A., 2022, In: Journal of Chemical Physics. 157, 16, 11 p., 164901.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  1 Citation (Scopus)

  23 Downloads (Pure)

• Filopodia rotate and coil by actively generating twist in their actin shaft

  Leijnse, N., Barooji, Y. F., Arastoo, M. R., Sonder, S. L., Verhagen, B., Wullkopf, L., Erler, J. T., Semsey, S., Nylandsted, J., Oddershede, L. B., Doostmohammadi, A. & Bendix, P. M., 28 Mar 2022, In: Nature Communications. 13, 1, 16 p., 1636.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  25 Citations (Scopus)

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• Fluctuation-induced dynamics of nematic topological defects

  Bonn, L. F., Ardaševa, A., Mueller, R., Shendruk, T. N. & Doostmohammadi, A., 2022, In: Physical Review E. 106, 10 p., 044706.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  5 Citations (Scopus)

  16 Downloads (Pure)

• Multiciliated cells use filopodia to probe tissue mechanics during epithelial integration in vivo

  Ventura, G., Amiri, A., Thiagarajan, R., Tolonen, M., Doostmohammadi, A. & Sedzinski, J., 2022, In: Nature Communications. 13, 1, 15 p., 6423.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  17 Citations (Scopus)

  23 Downloads (Pure)

• Nematic order condensation and topological defects in inertial active nematics

  Saghatchi, R., Yildiz, M. & Doostmohammadi, A., 25 Jul 2022, In: Physical Review E. 106, 1, 9 p., 014705.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  3 Citations (Scopus)

  14 Downloads (Pure)

• Physics of liquid crystals in cell biology

  Doostmohammadi, A. & Ladoux, B., Feb 2022, In: Trends in Cell Biology. 32, 2, p. 140-150 11 p.

  Research output: Contribution to journal › Review › Research › peer-review

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  38 Citations (Scopus)

  117 Downloads (Pure)

• Quadrupolar active stress induces exotic patterns of defect motion in compressible active nematics

  Sultan, S. A., Nejad, M. R. & Doostmohammadi, A., 7 May 2022, In: Soft Matter. 18, p. 4118-4126 9 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

• Self-sustained oscillations of active viscoelastic matter

  Plan, E. L. C. V. I. M., Le Thi, H., Yeomans, J. M. & Doostmohammadi, A., 8 Jul 2022, In: Journal of Physics A: Mathematical and Theoretical. 55, 27, 11 p., 275601.

  Research output: Contribution to journal › Journal article › Research › peer-review
  1 Citation (Scopus)

• Topological defects in biological matter

  Ardaševa, A. & Doostmohammadi, A., 2022, In: Nature Reviews Physics. 4, p. 354-356 3 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  13 Citations (Scopus)

• Unifying polar and nematic active matter: Emergence and co-existence of half-integer and full-integer topological defects

  Amiri, A., Mueller, R. & Doostmohammadi, A., 4 Mar 2022, In: Journal of Physics A: Mathematical and Theoretical. 55, 9, 12 p., 094002.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  8 Citations (Scopus)

  55 Downloads (Pure)

• Wrinkle force microscopy: a machine learning based approach to predict cell mechanics from images

  Liu, H., Daiki, M., Tsubasa, M., Hiroki, A., Genki, K., Koki, I., Doostmohammadi, A. & Shinji, D., 14 Apr 2022, In: Communications Biology. 5, 1, 9 p., 361.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  13 Citations (Scopus)

  29 Downloads (Pure)
• 2021

  Activity-induced instabilities of brain organoids

  Thijssen, K., Kusters, G. L. A. & Doostmohammadi, A., 7 Dec 2021, In: The European Physical Journal E: Soft Matter and Biological Physics. 44, 12, 8 p., 147.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  3 Citations (Scopus)

  26 Downloads (Pure)

• Activity pulses induce spontaneous flow reversals in viscoelastic environments

  Plan, E. L. C. V. I. M., Yeomans, J. M. & Doostmohammadi, A., 14 Apr 2021, In: Interface Focus. 18, 177, 7 p., 20210100.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  6 Citations (Scopus)

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• Investigating the nature of active forces in tissues reveals how contractile cells can form extensile monolayers

  Balasubramaniam, L., Doostmohammadi, A., Saw, T. B., Narayana, G. H. N. S., Mueller, R., Dang, T., Thomas, M., Gupta, S., Sonam, S., Yap, A. S., Toyama, Y., Mege, R-M., Yeomans, J. M. & Ladoux, B., 18 Feb 2021, In: Nature Materials. 20, 8, p. 1156-1166 33 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  82 Citations (Scopus)

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• Mechanics of cell integration in vivo

  Ventura, G. B., Amiri, A., Thiagarajan, R., Tolonen, M., Doostmohammadi, A. & Sedzinski, J., 18 Nov 2021, In: bioRxiv. 33 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

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• Mechanics of Live Cell Elimination

  Monfared, S., Ravichandran, G., Andrade, J. E. & Doostmohammadi, A., 18 Aug 2021, In: bioRxiv. p. 1-7 7 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

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• Memory effects, arches and polar defect ordering at the cross-over from wet to dry active nematics

  Nejad, M. R., Doostmohammadi, A. & Yeomans, J. M., 7 Mar 2021, In: Soft Matter. 17, 9, p. 2500-2511 12 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  10 Citations (Scopus)

• Spatiotemporal model of cellular mechanotransduction via Rho and YAP

  Novev, J. K., Heltberg, M. L., Jensen, M. H. & Doostmohammadi, A., 17 Aug 2021, In: Integrative Biology. 13, 8, p. 197-209 13 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  8 Citations (Scopus)

  42 Downloads (Pure)
• 2020

  Active inter-cellular forces in collective cell motility

  Zhang, G., Mueller, R., Doostmohammadi, A. & Yeomans, J. M., 26 Aug 2020, In: Journal of the Royal Society. Interface. 17, 169, 9 p., 20200312.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  20 Citations (Scopus)

• Active matter in a viscoelastic environment

  Plan, E. L. C. V. M., Yeomans, J. M. & Doostmohammadi, A., 24 Feb 2020, In: Physical Review Fluids. 5, 2, 15 p., 023102.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  17 Citations (Scopus)

  42 Downloads (Pure)

• Active nematics with anisotropic friction: the decisive role of the flow aligning parameter

  Thijssen, K., Metselaar, L., Yeomans, J. M. & Doostmohammadi, A., 28 Feb 2020, In: Soft Matter. 16, 8, p. 2065-2074 10 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  29 Citations (Scopus)

• Activity Induced Nematic Order in Isotropic Liquid Crystals

  Santhosh, S., Nejad, M. R., Doostmohammadi, A., Yeomans, J. M. & Thampi, S. P., 12 Feb 2020, In: Journal of Statistical Physics. 180, 1-6, p. 699-709 11 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  26 Citations (Scopus)

• Bacteria solve the problem of crowding by moving slowly

  Meacock, O. J., Doostmohammadi, A., Foster, K. R., Yeomans, J. M. & Durham, W. M., 23 Nov 2020, In: Nature Physics. 23 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  76 Citations (Scopus)

• Binding self-propelled topological defects in active turbulence

  Thijssen, K. & Doostmohammadi, A., 13 Oct 2020, In: Physical Review Research. 2, 4, 6 p., 042008.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  12 Citations (Scopus)

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• Flow States and Transitions of an Active Nematic in a Three-Dimensional Channel

  Chandragiri, S., Doostmohammadi, A., Yeomans, J. M. & Thampi, S. P., 30 Sep 2020, In: Physical Review Letters. 125, 14, 6 p., 148002.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  39 Citations (Scopus)

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• Mesoscale modelling of polymer aggregate digestion

  Novev, J. K., Doostmohammadi, A., Zöttl, A. & Yeomans, J. M., 1 Nov 2020, In: Current Research in Food Science. 3, p. 122-133 12 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  7 Citations (Scopus)

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• Polar jets of swimming bacteria condensed by a patterned liquid crystal

  Turiv, T., Koizumi, R., Thijssen, K., Genkin, M. M., Yu, H., Peng, C., Wei, Q-H., Yeomans, J. M., Aranson, I. S., Doostmohammadi, A. & Lavrentovich, O. D., 2 Mar 2020, In: Nature Physics. 16, 4, p. 481-487 8 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  58 Citations (Scopus)

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• The 2020 motile active matter roadmap

  Gompper, G., Winkler, R. G., Speck, T., Solon, A., Nardini, C., Peruani, F., Loewen, H., Golestanian, R., Kaupp, U. B., Alvarez, L., Kiorboe, T., Lauga, E., Poon, W. C. K., DeSimone, A., Muinos-Landin, S., Fischer, A., Soeker, N. A., Cichos, F., Kapral, R., Gaspard, P. & 17 others, Ripoll, M., Sagues, F., Doostmohammadi, A., Yeomans, J. M., Aranson, I. S., Bechinger, C., Stark, H., Hemelrijk, C. K., Nedelec, F. J., Sarkar, T., Aryaksama, T., Lacroix, M., Duclos, G., Yashunsky, V., Silberzan, P., Arroyo, M. & Kale, S., 8 May 2020, In: Journal of Physics: Condensed Matter. 32, 19, 68 p., 193001.

  Research output: Contribution to journal › Review › Research › peer-review

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  340 Citations (Scopus)

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• 2019

  Active matter invasion

  Kempf, F., Mueller, R., Frey, E., Yeomans, J. M. & Doostmohammadi, A., 29 Aug 2019, In: Soft Matter. p. 1-9 9 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  15 Citations (Scopus)

• Active transport in a channel: stabilisation by flow or thermodynamics

  Chandragiri, S., Doostmohammadi, A., Yeomans, J. M. & Thampi, S. P., 21 Feb 2019, In: Soft Matter. 15, 7, p. 1597-1604

  Research output: Contribution to journal › Journal article › Research › peer-review
  28 Citations (Scopus)

• Coherent motion of dense active matter

  Doostmohammadi, A. & Yeomans, J. M., 2 Mar 2019, In: European Physical Journal. Special Topics. 227, 17, p. 2401-2411

  Research output: Contribution to journal › Journal article › Research › peer-review

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  23 Citations (Scopus)

  95 Downloads (Pure)

• Emergence of Active Nematic Behavior in Monolayers of Isotropic Cells

  Mueller, R., Yeomans, J. M. & Doostmohammadi, A., 1 Feb 2019, In: Physical Review Letters. 122, 4, 5 p., 048004.

  Research output: Contribution to journal › Journal article › Research › peer-review
  102 Citations (Scopus)

• Reconfigurable Flows and Defect Landscape of Confined Active Nematics

  Hardoüin, J., Hughes, R., Doostmohammadi, A., Laurent, J., Lopez-leon, T., Yeo-mans, J. M., Ignés-Mullol, J. & Sagués, F., 5 Mar 2019, (Accepted/In press) In: Communications Physics.

  Research output: Contribution to journal › Journal article › Research › peer-review

• Sustained Oscillations of Epithelial Cell Sheets

  Peyret, G., Mueller, R., d'Alessandro, J., Begnaud, S., Marcq, P., Mege, R-M., Yeomans, J. M., Doostmohammadi, A. & Ladoux, B., 6 Aug 2019, In: Biophysical Journal. 117, 3, p. 464-478

  Research output: Contribution to journal › Journal article › Research › peer-review
  90 Citations (Scopus)

• Topological states in chiral active matter: Dynamic blue phases and active half-skyrmions

  Metselaar, L., Doostmohammadi, A. & Yeomans, J. M., 14 Feb 2019, In: Journal of Chemical Physics. 150, 6, 064909.

  Research output: Contribution to journal › Journal article › Research › peer-review
  25 Citations (Scopus)

• Topology and Morphology of Self-Deforming Active Shells

  Metselaar, L., Yeomans, J. M. & Doostmohammadi, A., 13 Nov 2019, In: Physical Review Letters. 123, 20, 208001.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  51 Citations (Scopus)

  38 Downloads (Pure)
• 2018

  Active nematics

  Doostmohammadi, A., Ignes-Mullol, J., Yeomans, J. M. & Sagues, F., 21 Aug 2018, In: Nature Communications. 9, 13 p., 3246.

  Research output: Contribution to journal › Review › Research › peer-review

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  435 Citations (Scopus)

  52 Downloads (Pure)