Anders Johannes Hansen

Search results

• 2025

  Persistence of Ancestral KhoeSan Mitochondrial Patterns in Contemporary South African Populations

  D'Amato, M. E., Ristow, P., Livesey, M., Heynes, K., Huber, N., Bravi, C., Hansen, A. J. & Parson, W., 2025, (E-pub ahead of print) In: Annals of Human Genetics. 13 p.

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• 2024

  Morphological and genetic evidence suggest gene flow among native and naturalized mint species

  Olofsson, J. K., Tyler, T., Dunning, L. T., Hjertson, M., Rühling, Å. & Hansen, A. J., 2024, In: American Journal of Botany. 111, 2, 14 p., e16280.

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• Population genomics of post-glacial western Eurasia

  Allentoft, M. E., Sikora, M., Refoyo-Martínez, A., Irving-Pease, E. K., Fischer, A., Barrie, W., Ingason, A., Stenderup, J., Sjögren, K-G., Pearson, A., da Mota, B. S., Paulsson, B. S., Halgren, A., Macleod, R., Jørkov, M. L. S., Demeter, F., Sørensen, L., Nielsen, P. O., Henriksen, R. A., Vimala, T. & 144 others, McColl, H., Margaryan, A., Ilardo, M., Vaughn, A., Mortensen, M. F., Nielsen, A. B., Hede, M. U., Johannsen, N. N., Rasmussen, P., Vinner, L., Renaud, G., Stern, A., Jensen, T. Z. T., Scorrano, G., Schroeder, H., Lysdahl, P., Ramsøe, A. D., Skorobogatov, A., Schork, A. J., Rosengren, A., Ruter, A., Outram, A., Timoshenko, A. A., Buzhilova, A., Coppa, A., Zubova, A., Silva, A. M., Hansen, A. J., Gromov, A., Logvin, A., Gotfredsen, A. B., Nielsen, B. H., González-Rabanal, B., Lalueza-Fox, C., McKenzie, C. J., Gaunitz, C., Blasco, C., Liesau, C., Martinez-Labarga, C., Pozdnyakov, D. V., Cuenca-Solana, D., Lordkipanidze, D. O., En’shin, D., Salazar-García, D. C., Price, T. D., Borić, D., Kostyleva, E., Veselovskaya, E. V., Usmanova, E. R., Cappellini, E., Petersen, E. B., Kannegaard, E., Radina, F., Yediay, F. E., Duday, H., Gutiérrez-Zugasti, I., Merts, I., Potekhina, I., Shevnina, I., Altinkaya, I., Guilaine, J., Hansen, J., Tortosa, J. E. A., Zilhão, J., Vega, J., Pedersen, K. B., Tunia, K., Zhao, L., Mylnikova, L. N., Larsson, L., Metz, L., Yepiskoposyan, L., Pedersen, L., Sarti, L., Orlando, L., Slimak, L., Klassen, L., Blank, M., González-Morales, M., Silvestrini, M., Vretemark, M., Nesterova, M. S., Rykun, M., Rolfo, M. F., Szmyt, M., Przybyła, M., Calattini, M., Sablin, M., Dobisíková, M., Meldgaard, M., Johansen, M., Berezina, N., Card, N., Saveliev, N. A., Poshekhonova, O., Rickards, O., Lozovskaya, O. V., Gábor, O., Uldum, O. C., Aurino, P., Kosintsev, P., Courtaud, P., Ríos, P., Mortensen, P., Lotz, P., Persson, P., Bangsgaard, P., de Barros Damgaard, P., Vang Petersen, P., Martinez, P. P., Włodarczak, P., Smolyaninov, R. V., Maring, R., Menduiña, R., Badalyan, R., Iversen, R., Turin, R., Vasilyev, S., Wåhlin, S., Borutskaya, S., Skochina, S., Sørensen, S. A., Andersen, S. H., Jørgensen, T., Serikov, Y. B., Molodin, V. I., Smrcka, V., Merts, V., Appadurai, V., Moiseyev, V., Magnusson, Y., Kjær, K. H., Lynnerup, N., Lawson, D. J., Sudmant, P. H., Rasmussen, S., Korneliussen, T. S., Durbin, R., Nielsen, R., Delaneau, O., Werge, T., Racimo, F., Kristiansen, K. & Willerslev, E., 2024, In: Nature. 625, 7994, p. 301-311

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  31 Citations (Scopus)

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• 2023

  An ethnographic framework for identifying dog sledding in the archaeological record

  Vitale, E., Rasmussen, J. A., Grønnow, B., Hansen, A. J., Meldgaard, M. & Feuerborn, T. R., 2023, In: Journal of Archaeological Science. 159, 10 p., 105856.

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• A simplified bacterial community found within the epidermis than at the epidermal surface of atopic dermatitis patients and healthy controls

  Barnes, C. J., Asplund, M., Clausen, M-L., Rasmussen, L., Olesen, C. M., Yüksel, Y. T., Andersen, P. S., Litman, T., Holmstrøm, K., Bay, L., Fritz, B. G., Bjarnsholt, T., Agner, T. & Hansen, A. J., 2023, In: BMC Microbiology. 23, 12 p., 273.

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• Assessing the genetic composition of cotton-top tamarins (Saguinus oedipus) before sweeping anthropogenic impact

  Rasmussen, L., Fontsere, C., Soto-Calderón, I. D., Guillen, R., Savage, A., Hansen, A. J., Hvilsom, C. & Gilbert, M. T. P., 2023, In: Molecular Ecology. 32, 20, p. 5514-5527 14 p.

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• Treated like dirt: Robust forensic and ecological inferences from soil eDNA after challenging sample storage

  Frøslev, T. G., Ejrnæs, R., Hansen, A. J., Bruun, H. H., Nielsen, I. B., Ekelund, F., Vestergård, M. & Kjøller, R., 2023, In: Environmental DNA. 5, 1, p. 158-174 17 p.

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  5 Citations (Scopus)

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• 2022

  Altered Maturation of the Skin Microbiome in Infants with Atopic Dermatitis

  Olesen, C. M., Clausen, M. L., Agner, T., Asplund, M., Rasmussen, L., Yüksel, Y. T., Andersen, P. S., Litman, T., Hansen, A. J. & Barnes, C. J., 2022, In: Acta Dermato-Venereologica. 102, 7 p., adv00817.

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  4 Citations (Scopus)

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• Ancient DNA provides insights into 4,000 years of resource economy across Greenland

  Seersholm, F. V., Harmsen, H., Gotfredsen, A. B., Madsen, C. K., Jensen, J. F., Hollesen, J., Meldgaard, M., Bunce, M. & Hansen, A. J., 2022, In: Nature Human Behaviour. 6, 12, p. 1723-1730

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  8 Citations (Scopus)

• Ancient root macropores and fractures in glacial till and their contribution to pesticide vulnerability of groundwater in low- and high-ground agricultural landscape: Pestpore2

  Jørgensen, P., Krogh, P. H., Qin, J., Modesti, L., Nielsen, I. B., Seersholm, F. V., Wagner, N., Hansen, A. J., Olsen, J., Strobel, B. W., Hansen, S., Gudbjerg, J., Petersen, C. T., Lacoste, M., Cousin, I., Keaveney, E. & Barrett, G., 2022, Miljøstyreslen. 245 p. (Pesticides Research; No. 207).

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• Enriching captivity conditions with natural elements does not prevent the loss of wild-like gut microbiota but shapes its compositional variation in two small mammals

  Koziol, A., Odriozola, I., Nyholm, L., Leonard, A., San Jose, C., Pauperio, J., Ferreira, C., Hansen, A. J., Aizpurua, O., Gilbert, M. T. P. & Alberdi, A., 2022, In: MicrobiologyOpen. 11, 5, 19 p., e1318.

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• Flying insect biomass is negatively associated with urban cover in surrounding landscapes

  Svenningsen, C. S., Bowler, D. E., Hecker, S., Bladt, J., Grescho, V., van Dam, N. M., Dauber, J., Eichenberg, D., Ejrnæs, R., Fløjgaard, C., Frenzel, M., Frøslev, T. G., Hansen, A. J., Heilmann-Clausen, J., Huang, Y., Larsen, J. C., Menger, J., Nayan, N. L. B. M., Pedersen, L. B., Richter, A. & 3 others, Dunn, R. R., Tøttrup, A. P. & Bonn, A., 2022, In: Diversity and Distributions. 28, 6, p. 1242-1254

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• Grey wolf genomic history reveals a dual ancestry of dogs

  Bergström, A., Stanton, D. W. G., Taron, U. H., Frantz, L., Sinding, M. H. S., Ersmark, E., Pfrengle, S., Cassatt-Johnstone, M., Lebrasseur, O., Girdland-Flink, L., Fernandes, D. M., Ollivier, M., Speidel, L., Gopalakrishnan, S., Westbury, M. V., Ramos-Madrigal, J., Feuerborn, T. R., Reiter, E., Gretzinger, J., Münzel, S. C. & 61 others, Swali, P., Conard, N. J., Carøe, C., Haile, J., Linderholm, A., Androsov, S., Barnes, I., Baumann, C., Benecke, N., Bocherens, H., Brace, S., Carden, R. F., Drucker, D. G., Fedorov, S., Gasparik, M., Germonpré, M., Grigoriev, S., Groves, P., Hertwig, S. T., Ivanova, V. V., Janssens, L., Jennings, R. P., Kasparov, A. K., Kirillova, I. V., Kurmaniyazov, I., Kuzmin, Y. V., Kosintsev, P. A., Lázničková-Galetová, M., Leduc, C., Nikolskiy, P., Nussbaumer, M., O’Drisceoil, C., Orlando, L., Outram, A., Pavlova, E. Y., Perri, A. R., Pilot, M., Pitulko, V. V., Plotnikov, V. V., Protopopov, A. V., Rehazek, A., Sablin, M., Seguin-Orlando, A., Storå, J., Verjux, C., Zaibert, V. F., Zazula, G., Crombé, P., Hansen, A. J., Willerslev, E., Leonard, J. A., Götherström, A., Pinhasi, R., Schuenemann, V. J., Hofreiter, M., Gilbert, M. T. P., Shapiro, B., Larson, G., Krause, J., Dalén, L. & Skoglund, P., 2022, In: Nature. 607, 7918, p. 313-320

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• Metabarcoding of soil environmental DNA replicates plant community variation but not specificity

  Barnes, C. J., Nielsen, I. B., Aagaard, A., Ejrnæs, R., Hansen, A. J. & Frøslev, T. G., 2022, In: Environmental DNA. 4, 4, p. 732-746 15 p.

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• Population Genomics of Stone Age Eurasia

  Allentoft, M. E., Sikora, M., Refoyo-Martínez, A., Irving-Pease, E. K., Fischer, A., Barrie, W., Ingason, A., Stenderup, J., Sjögren, K-G., Pearson, A., Mota, B., Paulsson, B. S., Halgren, A., Macleod, R., Schjellerup Jørkov, M. L., Demeter, F., Novosolov, M., Sørensen, L., Nielsen, P-O., Henriksen, R. H. A. & 143 others, Vimala, T., McColl, H., Margaryan, A., Ilardo, M., Vaughn, A., Mortensen, M. F., Nielsen, A. B., Hede, M. U., Rasmussen, P., Vinner, L., Renaud, G., Stern, A., Trolle Jensen, T. Z., Johannsen, N. N., Scorrano, G., Schroeder, H., Lysdahl, P., Ramsøe, A. D., Skorobogatov, A., Schork, A. J., Rosengren, A., Ruter, A., Outram, A., Timoshenko, A. A., Buzhilova, A., Coppa, A., Zubova, A., Silva, A. M., Hansen, A. J., Gromov, A., Logvin, A., Gotfredsen, A. B., Nielsen, B. H., González-Rabanal, B., Lalueza-Fox, C., McKenzie, C. J., Gaunitz, C., Blasco, C., Liesau, C., Martinez-Labarga, C., Pozdnyakov, D. V., Cuenca-Solana, D., Lordkipanidze, D. O., En’shin, D., Salazar-García, D. C., Price, T. D., Borić, D., Kostyleva, E., Veselovskaya, E. V., Usmanova, E. R., Cappellini, E., Petersen, E. B., Kannegaard, E., Radina, F., Yediay, F. E., Duday, H., Gutiérrez-Zugasti, I., Potekhina, I., Shevnina, I., Altinkaya, I., Guilaine, J., Hansen, J., Tortosa, J. E. A., Zilhão, J., Vega, J., Pedersen, K. B., Tunia, K., Zhao, L., Mylnikova, L. N., Larsson, L., Metz, L., Yeppiskoposyan, L., Pedersen, L., Sarti, L., Orlando, L., Slimak, L., Klassen, L., Blank, M., González-Morales, M., Silvestrini, M., Vretemark, M., Nesterova, M. S., Rykun, M., Rolfo, M. F., Szmyt, M., Przybyła, M., Calattini, M., Sablin, M., Dobisíková, M., Meldgaard, M., Johansen, M., Berezina, N., Card, N., Saveliev, N. A., Poshekhonova, O., Rickards, O., Lozovskaya, O. V., Uldum, O. C., Aurino, P., Kosintsev, P., Courtaud, P., Ríos, P., Mortensen, P., Lotz, P., Persson, P. Å., Bangsgaard, P., Damgaard, P. D. B., Petersen, P. V., Martinez, P. P., Włodarczak, P., Smolyaninov, R. V., Maring, R., Menduiña, R., Badalyan, R., Iversen, R., Turin, R., Vasilyiev, S., Wåhlin, S., Borutskaya, S., Skochina, S., Sørensen, S. A., Andersen, S. H., Jørgensen, T., Serikov, Y. B., Molodin, V. I., Smrcka, V., Merz, V., Appadurai, V., Moiseyev, V., Magnusson, Y., Kjær, K. H., Lynnerup, N., Lawson, D. J., Sudmant, P. H., Rasmussen, S., Korneliussen, T., Durbin, R., Nielsen, R., Delaneau, O., Werge, T., Racimo, F., Kristiansen, K. & Willerslev, E., 2022, p. 1-71, (bioRxiv).

  Research output: Working paper › Preprint

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• Temporal and Spatial Variation of the Skin-Associated Bacteria from Healthy Participants and Atopic Dermatitis Patients

  Barnes, C. J., Clausen, M-L., Asplund, M., Rasmussen, L., Olesen, C. M., Yüsel, Y. T., Andersen, P. S., Litman, T., Hansen, A. J. & Agner, T., 2022, In: mSphere. 7, 1, 14 p., e00917-21.

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• 2021

  A genomic exploration of the early evolution of extant cats and their sabre-toothed relatives: [version 2; peer review: 2 approved]

  Westbury, M. V., Barnett, R., Sandoval-Velasco, M., Gower, G., Vieira, F. G., de Manuel, M., Hansen, A. J., Yamaguchi, N., Werdelin, L., Marques-Bonet, T., Gilbert, M. T. P. & Lorenzen, E. D., 2021, In: Open Research Europe. 1, 16 p., 25.

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• A genomic exploration of the early evolution of extant cats and their sabre-toothed relatives: [version 1; peer review: 2 approved]

  Westbury, M. V., Barnett, R., Sandoval-Velasco, M., Gower, G., Vieira, F. G., de Manuel, M., Hansen, A. J., Yamaguchi, N., Werdelin, L., Marques-Bonet, T., Gilbert, M. T. P. & Lorenzen, E. D., 2021, In: Open Research Europe. 1, 15 p., 25.

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  2 Citations (Scopus)

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• Ancient DNA preserved in small bone fragments from the PW Lund collection

  Seersholm, F., Hansen, K. L., Heydenrych, M., Hansen, A. J., Bunce, M. & Allentoft, M. E., 2021, In: Ecology and Evolution. 11, 5, p. 2064-2071 8 p.

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• Ancient DNA reveals the lost domestication history of south american camelids in Northern Chile and across the andes

  Díaz-Maroto, P., Rey-Iglesia, A., Cartajena, I., Núñez, L., Westbury, M. V., Varas, V., Moraga, M., Campos, P. F., Orozco-terWenge, P., Marín, J. C. & Hansen, A. J., 2021, In: eLife. 10, e63390.

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  21 Citations (Scopus)

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• Detecting flying insects using car nets and DNA metabarcoding

  Svenningsen, C. S., Froslev, T. G., Bladt, J., Pedersen, L. B., Larsen, J. C., Ejrnaes, R., Flojgaard, C., Hansen, A. J., Heilmann-Clausen, J., Dunn, R. R. & Tottrup, A. P., 2021, In: Biology Letters. 17, 3, 6 p., 20200833.

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  22 Citations (Scopus)

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• Exploring the phylogeography and population dynamics of the giant deer (Megaloceros giganteus) using Late Quaternary mitogenomes

  Rey-Iglesia, A., Lister, A. M., Campos, P. F., Brace, S., Mattiangeli, V., Daly, K. G., Teasdale, M. D., Bradley, D. G., Barnes, I. & Hansen, A. J., 2021, In: Proceedings of the Royal Society B: Biological Sciences. 288, 1950, 9 p., 20201864.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  10 Citations (Scopus)

• Metagenomic Analysis Reveals Previously Undescribed Bat Coronavirus Strains in Eswatini

  Shapiro, J. T., Mollerup, S., Jensen, R. H., Olofsson, J. K., Nguyen, N. D., Hansen, T. A., Vinner, L., Monadjem, A., McCleery, R. A. & Hansen, A. J., 2021, In: EcoHealth. 18, 4, p. 421-428

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• Modern Siberian dog ancestry was shaped by several thousand years of Eurasian-wide trade and human dispersal

  Feuerborn, T. R., Carmagnini, A., Losey, R. J., Nomokonova, T., Askeyev, A., Askeyev, I., Askeyev, O., Antipina, E. E., Appelt, M., Bachura, O. P., Beglane, F., Bradley, D. G., Daly, K. G., Gopalakrishnan, S., Gregersen, K. M., Guo, C., Gusev, A. V., Jones, C., Kosintsev, P. A., Kuzmin, Y. V. & 17 others, Mattiangeli, V., Perri, A. R., Plekhanov, A. V., Ramos-Madrigal, J., Schmidt, A. L., Shaymuratova, D., Smith, O., Yavorskaya, L. V., Zhang, G., Willerslev, E., Meldgaard, M., Gilbert, M. T. P., Larson, G., Dalén, L., Hansen, A. J., Sinding, M. H. S. & Frantz, L., 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 39, e2100338118.

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• Response of an Afro-Palearctic bird migrant to glaciation cycles

  Thorup, K., Pedersen, L., da Fonseca, R. R., Naimi, B., Nogués-Bravo, D., Krapp, M., Manica, A., Willemoes, M., Sjöberg, S., Feng, S., Chen, G., Rey-Iglesia, A., Campos, P. F., Beyer, R., Araújo, M. B., Hansen, A. J., Zhang, G., Tøttrup, A. P. & Rahbek, C., 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 52, 8 p., e2023836118.

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• 2020

  Ancient DNA suggests modern wolves trace their origin to a Late Pleistocene expansion from Beringia

  Loog, L., Thalmann, O., Sinding, M. H. S., Schuenemann, V. J., Perri, A., Germonpré, M., Bocherens, H., Witt, K. E., Samaniego Castruita, J. A., Velasco, M. S., Lundstrøm, I. K. C., Wales, N., Sonet, G., Frantz, L., Schroeder, H., Budd, J., Jimenez, E. L., Fedorov, S., Gasparyan, B., Kandel, A. W. & 16 others, Lázničková-Galetová, M., Napierala, H., Uerpmann, H. P., Nikolskiy, P. A., Pavlova, E. Y., Pitulko, V. V., Herzig, K-H., Malhi, R. S., Willerslev, E., Hansen, A. J., Dobney, K., Gilbert, M. T. P., Krause, J., Larson, G., Eriksson, A. & Manica, A., 2020, In: Molecular Ecology. 29, 9, p. 1596-1610 15 p.

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• Archives of human-dog relationships: Genetic and stable isotope analysis of Arctic fur clothing

  Harris, A. J. T., Feuerborn, T. R., Sinding, M. H. S., Nottingham, J., Knudsen, R., Rey-Iglesia, A., Schmidt, A. L., Appelt, M., Grønnow, B., Alexander, M., Eriksson, G., Dalén, L., Hansen, A. J. & Lidén, K., 2020, In: Journal of Anthropological Archaeology. 59, 13 p., 101200.

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• Arctic-adapted dogs emerged at the Pleistocene-Holocene transition

  Sinding, M. H. S., Gopalakrishnan, S., Ramos-Madrigal, J., de Manuel, M., Pitulko, V. V., Kuderna, L., Feuerborn, T. R., Frantz, L. A. F., Vieira, F. G., Niemann, J., Samaniego Castruita, J. A., Carøe, C., Andersen-Ranberg, E. U., Jordan, P. D., Pavlova, E. Y., Nikolskiy, P. A., Kasparov, A. K., Ivanova, V. V., Willerslev, E., Skoglund, P. & 15 others, Fredholm, M., Wennerberg, S. E., Heide-Jørgensen, M. P., Dietz, R., Sonne, C., Meldgaard, M., Dalén, L., Larson, G., Petersen, B., Sicheritz-Pontén, T., Bachmann, L., Wiig, Ø., Marques-Bonet, T., Hansen, A. J. & Gilbert, M. T. P., 2020, In: Science (New York, N.Y.). 368, 6498, p. 1495-1499 5 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  66 Citations (Scopus)

• Comparing DADA2 and OTU clustering approaches in studying the bacterial communities of atopic dermatitis

  Barnes, C. J., Rasmussen, L., Asplund, M., Knudsen, S. W., Clausen, M-L., Agner, T. & Hansen, A. J., 2020, In: Journal of Medical Microbiology. 69, 11, p. 1293-1302 10 p.

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• Diverse variola virus (smallpox) strains were widespread in northern Europe in the Viking Age

  Mühlemann, B., Vinner, L., Margaryan, A., Wilhelmson, H., de la Fuente Castro, C., Allentoft, M. E., de Barros Damgaard, P., Hansen, A. J., Holtsmark Nielsen, S., Strand, L. M., Bill, J., Buzhilova, A., Pushkina, T., Falys, C., Khartanovich, V., Moiseyev, V., Jørkov, M. L. S., Østergaard Sørensen, P., Magnusson, Y., Gustin, I. & 9 others, Schroeder, H., Sutter, G., Smith, G. L., Drosten, C., Fouchier, R. A. M., Smith, D. J., Willerslev, E., Jones, T. C. & Sikora, M., 2020, In: Science (New York, N.Y.). 369, 6502, p. 1-12

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• Genomes of Pleistocene Siberian Wolves Uncover Multiple Extinct Wolf Lineages

  Ramos-Madrigal, J., Sinding, M-H. S., Carøe, C., Mak, S. S. T., Niemann, J., Samaniego Castruita, J. A., Fedorov, S., Kandyba, A., Germonpré, M., Bocherens, H., Feuerborn, T. R., Pitulko, V. V., Pavlova, E. Y., Nikolskiy, P. A., Kasparov, A. K., Ivanova, V. V., Larson, G., Frantz, L. A. F., Willerslev, E., Meldgaard, M. & 7 others, Petersen, B., Sicheritz-Ponten, T., Bachmann, L., Wiig, Ø., Hansen, A. J., Gilbert, M. T. P. & Gopalakrishnan, S., 2020, In: Current biology : CB. 31, p. 198-206

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• Genomic Adaptations and Evolutionary History of the Extinct Scimitar-Toothed Cat, Homotherium latidens

  Barnett, R., Westbury, M. V., Sandoval-Velasco, M., Vieira, F. G., Jeon, S., Zazula, G., Martin, M. D., Ho, S. Y. W., Mather, N., Gopalakrishnan, S., Ramos-Madrigal, J., de Manuel, M., Zepeda-Mendoza, M. L., Antunes, A., Baez, A. C., De Cahsan, B., Larson, G., O’Brien, S. J., Eizirik, E., Johnson, W. E. & 11 others, Koepfli, K-P., Wilting, A., Fickel, J., Dalén, L., Lorenzen, E. D., Marques-Bonet, T., Hansen, A. J., Zhang, G., Bhak, J., Yamaguchi, N. & Gilbert, M. T. P., 2020, In: Current Biology. 30, p. 5018-5025

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• Increased Bacterial Richness Associated With Lesions Within the Porites spp. of Vietnam

  Rasmussen, L., Barnes, C., Mak, S. S. T., Kjartansdóttir, K. R., Hansen, T. A., Doan-Nhu, H., Nguyen-Ngoc, L., Guldberg Frøslev, T., Hellström, M. & Hansen, A. J., 27 May 2020, In: Frontiers in Ecology and Evolution. 8, 151.

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  2 Citations (Scopus)

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• Multi-proxy analyses of a mid-15th century Middle Iron Age Bantu-speaker palaeo-faecal specimen elucidates the configuration of the 'ancestral' sub-Saharan African intestinal microbiome

  Rifkin, R. F., Vikram, S., Ramond, J. B., Rey-Iglesia, A., Brand, T. B., Porraz, G., Val, A., Hall, G., Woodborne, S., Le Bailly, M., Potgieter, M., Underdown, S. J., Koopman, J. E., Cowan, D. A., Van De Peer, Y., Willerslev, E. & Hansen, A. J., 6 May 2020, In: Microbiome. 8, 1, 62.

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• Qimmeq: Kalallit Qimmiat Qimuttoq

  Translated title of the contribution: Qimmeq - The Greenland Sled Dog : Qimmeq- Den Grønlandske SlædehundEgevang, C. (ed.), Meldgaard, M., Andersen-Ranberg, E. U., Feuerborn, T. R., Hansen, A. J., Houser, G., Lund Jensen, M., Langebæk, R., Lennert, N., Lykke, P., Markussen, U., van den Berg, S., Sinding, M. H. S. & Sonne, C., 2020, Copenhagen: Alle alle. 224 p.

  Research output: Book/Report › Book

• Rapid range shifts and megafaunal extinctions associated with late Pleistocene climate change

  Seersholm, F. V., Werndly, D. J., Grealy, A., Johnson, T., Keenan Early, E. M., Lundelius, E. L., Winsborough, B., Farr, G. E., Toomey, R., Hansen, A. J., Shapiro, B., Waters, M. R., McDonald, G., Linderholm, A., Stafford, T. W. & Bunce, M., 2020, In: Nature Communications. 11, 1, 10 p., 2770.

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• The evolutionary history of extinct and living lions

  de Manuel, M., Barnett, R., Sandoval-Velasco, M., Yamaguchi, N., Vieira, F. G., Mendoza, M. L. Z., Liu, S., Martin, M. D., Sinding, M-H. S., Mak, S. S. T., Caroe, C., Liu, S., Guo, C., Zheng, J., Zazula, G., Baryshnikov, G., Eizirik, E., Koepfli, K-P., Johnson, W. E., Antunes, A. & 9 others, Sicheritz-Ponten, T., Gopalakrishnan, S., Larson, G., Yang, H., O'Brien, S. J., Hansen, A. J., Zhang, G., Marques-Bonet, T. & Gilbert, M. T. P., 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 20, p. 10927-10934 8 p.

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• Universal Dermal Microbiome in Human Skin

  Bay, L., Barnes, C. J., Fritz, B. G., Thorsen, J., Restrup, M. E. M., Rasmussen, L., Sørensen, J. K., Hesselvig, A. B., Odgaard, A., Hansen, A. J. & Bjarnsholt, T., 2020, In: mBio. 11, 1, 13 p., e02945-19.

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• 2019

  A systematic survey of regional multi-taxon biodiversity: evaluating strategies and coverage

  Brunbjerg, A. K., Bruun, H. H., Brøndum, L., Classen, A. T., Dalby, L., Fog, K., Frøslev, T. G., Goldberg, I., Hansen, A. J., Hansen, M. D. D., Høye, T. T., Illum, A. A., Læssøe, T., Newman, G. S., Skipper, L., Søchting, U. & Ejrnæs, R., 2019, In: BMC Ecology. 19, 15 p., 43.

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• Contaminating viral sequences in high-throughput sequencing viromics: a linkage study of 700 sequencing libraries

  Asplund, M., Kjartansdóttir, K. R., Mollerup, S., Vinner, L., Fridholm, H., Herrera, J. A. R., Friis-Nielsen, J., Hansen, T. A., Jensen, R. H., Nielsen, I. B., Richter, S. R., Rey-Iglesia, A., Matey-Hernandez, M. L., Alquezar-Planas, D. E., Olsen, P. V. S., Sicheritz-Pontén, T., Willerslev, E., Lund, O., Brunak, S., Mourier, T. & 3 others, Nielsen, L. P., Izarzugaza, J. M. G. & Hansen, A. J., 2019, In: Clinical Microbiology and Infection. 25, 10, p. 1277-1285

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• Genetic landscape of the mitochondrial DNA control region in South African populations

  Livesey, M. C., Ristow, P. G., Heynes, K., Hansen, A. J. & D'Amato, M. E., 2019, In: Forensic Science International: Genetics Supplement Series. 7, 1, p. 36-37

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• High-Throughput Sequencing-Based Investigation of Viruses in Human Cancers by Multienrichment Approach

  Mollerup, S., Asplund, M., Friis-Nielsen, J., Kjartansdóttir, K. R., Fridholm, H., Hansen, T. A., Herrera, J. A. R., Barnes, C. J., Jensen, R. H., Richter, S. R., Nielsen, I. B., Pietroni, C., Alquezar-Planas, D. E., Rey-Iglesia, A., Olsen, P. V. S., Rajpert-De Meyts, E., Groth-Pedersen, L., von Buchwald, C., Jensen, D. H., Gniadecki, R. & 20 others, Høgdall, E., Langhoff, J. L., Pete, I., Vereczkey, I., Baranyai, Z., Dybkaer, K., Johnsen, H. E., Steiniche, T., Hokland, P., Rosenberg, J., Baandrup, U., Sicheritz-Pontén, T., Willerslev, E., Brunak, S., Lund, O., Mourier, T., Vinner, L., Izarzugaza, J. M. G., Nielsen, L. P. & Hansen, A. J., 15 Oct 2019, In: The Journal of Infectious Diseases. 220, 8, p. 1312-1324

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• High-throughput sequencing reveals no viral pathogens in eight cases of ocular adnexal extranodal marginal zone B-cell lymphoma

  Mollerup, S., Mikkelsen, L. H., Hansen, A. J. & Heegaard, S., 2019, In: Experimental Eye Research. 185, 5 p., 107677.

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• Man against machine: do fungal fruitbodies and eDNA give similar biodiversity assessments across broad environmental gradients?

  Frøslev, T. G., Kjøller, R., Bruun, H. H., Ejrnæs, R., Hansen, A. J., Læssøe, T. & Heilmann-Clausen, J., 2019, In: Biological Conservation. 233, p. 201-212 12 p.

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• Metagenomic analysis of viruses in toilet waste from long distance flights-A new procedure for global infectious disease surveillance

  Hjelmso, M. H., Mollerup, S., Jensen, R. H., Pietroni, C., Lukjancenko, O., Schultz, A. C., Aarestrup, F. M. & Hansen, A. J., 14 Jan 2019, In: PLoS ONE. 14, 1, 15 p., e0210368.

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• MobiSeq: De novo SNP discovery in model and non-model species through sequencing the flanking region of transposable elements

  Rey-Iglesia, A., Gopalakrishan, S., Carøe, C., Alquezar-Planas, D. E., Nielsen, A. A., Röder, T., Pedersen, L. B., Næsborg-Nielsen, C., Sinding, M-H. S., Rath, M. F., Li, Z., Petersen, B., Gilbert, M. T. P., Bunce, M., Mourier, T. & Hansen, A. J., 2019, In: Molecular Ecology Resources. 19, 2, p. 512-525 14 p.

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• Predicting provenance of forensic soil samples: linking soil to ecological habitats by metabarcoding and supervised classification

  Fløjgaard, C., Frøslev, T. G., Brunbjerg, A. K., Bruun, H. H., Moeslund, J., Hansen, A. J. & Ejrnæs, R., 2019, In: PLoS ONE. 14, 7, 16 p., e0202844.

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• Specialized sledge dogs accompanied Inuit dispersal across the North American Arctic

  Ameen, C., Feuerborn, T. R., Brown, S. K., Linderholm, A., Hulme-Beaman, A., Lebrasseur, O., Sinding, M-H. S., Lounsberry, Z. T., Lin, A. T., Appelt, M., Bachmann, L., Betts, M., Britton, K., Darwent, J., Dietz, R., Fredholm, M., Gopalakrishnan, S., Goriunova, O. I., Grønnow, B., Haile, J. & 39 others, Hallsson, J. H., Harrison, R., Heide-Jørgensen, M. P., Knecht, R., Losey, R. J., Masson-MacLean, E., McGovern, T. H., McManus-Fry, E., Meldgaard, M., Midtdal, Å., Moss, M. L., Nikitin, I. G., Nomokonova, T., Pálsdóttir, A. H., Perri, A., Popov, A. N., Rankin, L., Reuther, J. D., Sablin, M., Schmidt, A. L., Shirar, S., Smiarowski, K., Sonne, C., Stiner, M. C., Vasyukov, M., West, C. F., Ween, G. B., Wennerberg, S. E., Wiig, Ø., Woollett, J., Dalén, L., Hansen, A. J., P Gilbert, M. T., Sacks, B. N., Frantz, L., Larson, G., Dobney, K., Darwent, C. M. & Evin, A., 2019, In: Proceedings. Biological sciences. 286, 1916, p. 20191929

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• Systematics of West African Miniopterus with the description of a new species

  Monadjem, A., Shapiro, J. T., Richards, L. R., Karabulut, H., Crawley, W., Nielsen, I. B., Hansen, A., Bohmann, K. & Mourier, T., Dec 2019, In: Acta Chiropterologica. 21, 2, p. 237-256

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• The first complete mitochondrial genome of an ancient South American vicuna, Vicugna vicugna, from Tulan-54 (3200-2400 BP Northern Chile)

  Diaz-Maroto, P. F., Hansen, A. J. & Rey-Iglesia, A., 2 Jan 2019, In: Mitochondrial DNA Part B: Resources. 4, 1, p. 340-341

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