Anders Krogh

Research output

Research output per year 2001 2006 2007 2008 2013 2014 2015 2023

• 14281 Citations
• 95 Journal article
• 3 Article in proceedings
• 2 Book chapter
• 2 Conference abstract in journal
• 4 More
  • 2 Letter
  • 1 Conference abstract for conference
  • 1 Review

Research output per year

Research output per year

Search results

• 2023

  N-of-one differential gene expression without control samples using a deep generative model

  Prada-Luengo, I., Schuster, V., Liang, Y., Terkelsen, T., Sora, V. & Krogh, A., 2023, In: Genome Biology. 24, 1, 17 p., 263.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  1 Citation (Scopus)

  31 Downloads (Pure)

• Synthetic Data Generation by Artificial Intelligence to Accelerate Research and Precision Medicine in Hematology

  D'Amico, S., Dall'Olio, D., Sala, C., Dall'Olio, L., Sauta, E., Zampini, M., Asti, G., Lanino, L., Maggioni, G., Campagna, A., Ubezio, M., Russo, A., Bicchieri, M. E., Riva, E., Tentori, C. A., Travaglino, E., Morandini, P., Savevski, V., Santoro, A., Prada-Luengo, I. & 9 others, Krogh, A., Santini, V., Kordasti, S., Platzbecker, U., Diez-Campelo, M., Fenaux, P., Haferlach, T., Castellani, G. & Della Porta, M. G., 2023, In: JCO clinical cancer informatics. 7, p. 1-22 e2300021.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  47 Downloads (Pure)

• The Deep Generative Decoder: MAP estimation of representations improves modelling of single-cell RNA data

  Schuster, V. & Krogh, A., 2023, In: Bioinformatics. 39, 9, 14 p., btad497.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  2 Citations (Scopus)

  23 Downloads (Pure)
• 2022

  Context dependency of nucleotide probabilities and variants in human DNA

  Liang, Y., Grønbæk, C., Fariselli, P. & Krogh, A., 2022, In: BMC Genomics. 23, 1, 15 p., 87.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  3 Citations (Scopus)

  61 Downloads (Pure)

• Context dependent prediction in DNA sequence using neural networks

  Grønbæk, C., Liang, Y., Elliott, D. & Krogh, A., 2022, In: PeerJ. 10, 22 p., e13666.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  38 Downloads (Pure)
• 2021

  A manifold learning perspective on representation learning: Learning decoder and representations without an encoder

  Schuster, V. & Krogh, A., Nov 2021, In: Entropy. 23, 11, 14 p., 1403.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  2 Citations (Scopus)

  47 Downloads (Pure)

• High-throughput proteomics of breast cancer interstitial fluid: identification of tumor subtype-specific serologically relevant biomarkers

  Terkelsen, T., Pernemalm, M., Gromov, P., Borresen-Dale, A-L., Krogh, A., Haakensen, V. D., Lethio, J., Papaleo, E. & Gromova, I., 2021, In: Molecular Oncology. 15, 2, p. 429-461 33 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  21 Citations (Scopus)

  53 Downloads (Pure)
• 2020

  CAncer bioMarker Prediction Pipeline (CAMPP) - A standardized framework for the analysis of quantitative biological data

  Terkelsen, T., Krogh, A. & Papaleo, E., 2020, In: PLOS Computational Biology. 16, 3, 20 p., e1007665.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  12 Citations (Scopus)

  126 Downloads (Pure)

• Secreted breast tumor interstitial fluid microRNAs and their target genes are associated with triple-negative breast cancer, tumor grade, and immune infiltration

  Terkelsen, T., Russo, F., Gromov, P., Haakensen, V. D., Brunak, S., Gromova, I., Krogh, A. & Papaleo, E., 2020, In: Breast Cancer Research. 22, 1, 36 p., 73.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  2 Citations (Scopus)

  87 Downloads (Pure)

• Taxonomic classification method for metagenomics based on core protein families with Core-Kaiju

  Tovo, A., Menzel, P., Krogh, A., Cosentino Lagomarsino, M. & Suweis, S., 2020, In: Nucleic Acids Research. 48, 16, 13 p., e93.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  22 Citations (Scopus)

  20 Downloads (Pure)
• 2019

  Sensitive detection of circular DNAs at single-nucleotide resolution using guided realignment of partially aligned reads

  Prada-Luengo, I., Krogh, A., Sørensen, L. M. & Regenberg, B., 2019, In: BMC Bioinformatics. 20, 9 p., 663.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  68 Citations (Scopus)

  131 Downloads (Pure)
• 2018

  Accurate genotyping across variant classes and lengths using variant graphs

  Sibbesen, J. A., Maretty, L., Krogh, A., Petersen, B., Sibbesen, J. A., Liu, S., Have, C. T., Bork-Jensen, J., Guo, X., Hansen, T., Krogh, A., Sørensen, T. I. A., Pedersen, O. B., Wang, J. & Brunak, S., 2018, In: Nature Genetics. 50, p. 1054-1059 6 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  44 Citations (Scopus)

• Benchmarking the HLA typing performance of Polysolver and Optitype in 50 Danish parental trios

  Matey-Hernandez, M. L., Danish Pan Genome Consortium, Brunak, S., Izarzugaza, J. M. G., Sørensen, L. M., Petersen, B., Sibbesen, J. A., Liu, S., Belling, K. G., Have, C. T., Bork-Jensen, J., Sun, J., Hansen, T., Krogh, A., Sørensen, T. I. A., Pedersen, O. B., Wang, J., Eiberg, H. R. L. & Kristiansen, K., 2018, In: BMC Bioinformatics. 19, p. 1-12 239.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  23 Citations (Scopus)

  197 Downloads (Pure)

• Genomic Analyses from Non-invasive Prenatal Testing Reveal Genetic Associations, Patterns of Viral Infections, and Chinese Population History

  Liu, S., Huang, S., Chen, F., Zhao, L., Yuan, Y., Francis, S. S., Fang, L., Li, Z., Lin, L., Liu, R., Zhang, Y., Xu, H., Li, S., Zhou, Y., Davies, R. W., Liu, Q., Walters, R. G., Lin, K., Ju, J., Komeliussen, T. & 18 others, Yang, M. A., Fu, Q., Wang, J., Zhou, L., Krogh, A., Zhang, H., Wang, W., Chen, Z., Cai, Z., Yin, Y., Yang, H., Mao, M., Shendure, J., Wang, J., Albrechtsen, A., Jin, X., Nielsen, R. & Xu, X., 2018, In: Cell. 175, 2, p. 347-359, e1-e7

  Research output: Contribution to journal › Journal article › Research › peer-review
  177 Citations (Scopus)
• 2017

  Analysis of 62 hybrid assembled human Y chromosomes exposes rapid structural changes and high rates of gene conversion

  Skov, L., Schierup, M. H., Danish Pan Genome Consortium, Sørensen, L. M., Petersen, B., Sibbesen, J. A., Liu, S., Belling, K. G., Have, C. T., Bork-Jensen, J., Hansen, T., Krogh, A., Sørensen, T. I. A., Pedersen, O. B., Rasmussen, S., Kristiansen, K. & Brunak, S., 2017, In: PLOS Genetics. 13, 8, p. e1006834

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access
  31 Citations (Scopus)

• Assembly and analysis of 100 full MHC haplotypes from the Danish population

  Jensen, J. M., Villesen, P., Friborg, R. M., Mailund, T., Besenbacher, S., Sørensen, L. M., Petersen, B., Sibbesen, J. A., Liu, S., Skov, L., Belling, K. G., Have, C. T., Izarzugaza, J. M. G., Grosjean, M., Bork-Jensen, J., Grove, J., Als, T. D., Huang, S., Chang, Y., Xu, R. & 39 others, Ye, W., Rao, J., Guo, X., Sun, J., Cao, H., Ye, C., Beusekom, J. V., Espeseth, T., Flindt, E., Halager, A. E., Hellard, S. L., Hultman, C. M., Lescai, F., Li, S., Lund, O., Løngren, P., Matey-Hernandez, M. L., Mors, O., Pedersen, C. N. S., Sicheritz-Pontén, T., Sullivan, P., Syed, A., Westergaard, D., Yadav, R., Li, N., Xu, X., Hansen, T., Bolund, L., Krogh, A., Sørensen, T. I. A., Pedersen, O. B., Gupta, R., Rasmussen, S., Børglum, A. D., Wang, J., Eiberg, H. R. L., Kristiansen, K., Brunak, S. & Schierup, M. H., Sep 2017, In: Genome Research. 27, 9, p. 1597-1607 11 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  14 Citations (Scopus)

  248 Downloads (Pure)

• Highly accessible AU-rich regions in 3' untranslated regions are hotspots for binding of regulatory factors

  Plass, M., Rasmussen, S. H. & Krogh, A., 14 Apr 2017, In: PLoS Computational Biology. 13, 4, 26 p., e1005460.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  40 Citations (Scopus)

  314 Downloads (Pure)

• Sugar metabolism of the first thermophilic Planctomycete Thermogutta terrifontis: comparative genomic and transcriptomic approaches

  Elcheninov, A. G., Menzel, P., Gudbergsdottir, S. R., Slesarev, A. I., Kadnikov, V. V., Krogh, A., Bonch-Osmolovskaya, E. A., Peng, X. & Kublanov, I. V., 2 Nov 2017, In: Frontiers in Microbiology. 8, 11 p., 2140.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  13 Citations (Scopus)

  191 Downloads (Pure)
• 2016

  Fast and sensitive taxonomic classification for metagenomics with Kaiju

  Menzel, P., Ng, K. L. & Krogh, A., 2016, In: Nature Communications. 7, 9 p., 11257.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  1187 Citations (Scopus)

  240 Downloads (Pure)

• Novel viral genomes identified from six metagenomes reveal wide distribution of archaeal viruses and high viral diversity in terrestrial hot springs

  Islin, S. R., Menzel, P., Krogh, A., Young, M. & Peng, X., 2016, In: Environmental Microbiology. 18, 3, p. 863-874 12 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  44 Citations (Scopus)

• RNA sequencing of trigeminal ganglia in Rattus Norvegicus after glyceryl trinitrate infusion with relevance to migraine

  Pedersen, S. H., Sørensen, L. M., Ramachandran, R., Sibbesen, J. A., Yakimov, V., Christensen, R. E., Hansen, T. F., Krogh, A., Olesen, J. & Olesen, I. J., 2016, In: P L o S One. 11, 5, 13 p., e0155039.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  8 Citations (Scopus)

  222 Downloads (Pure)
• 2015

  Cancers of unknown primary origin (CUP) are characterized by chromosomal instability (CIN) compared to metastasis of know origin

  Vikeså, J., Møller, A. K. H., Kaczkowski, B., Helweg-Larsen, R. B., Winther, O., Henao Giraldo, R., Krogh, A., Perell, K., Jensen, F., Daugaard, G. & Nielsen, F. C., 2015, In: B M C Cancer. 15, 14 p., 151.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  36 Citations (Scopus)

  271 Downloads (Pure)

• Comparative metagenomics of eight geographically remote terrestrial hot springs

  Menzel, P., Islin, S. R., Rike, A. G., Lin, L., Zhang, Q., Contursi, P., Moracci, M., Kristjansson, J. K., Bolduc, B., Gavrilov, S., Ravin, N., Mardanov, A., Bonch-Osmolovskaya, E., Young, M., Krogh, A. & Peng, X., 2015, In: Microbial Ecology. 70, 2, p. 411-424 14 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  100 Citations (Scopus)

• De novo assembly of a haplotype-resolved human genome

  Cao, H., Wu, H., Luo, R., Huang, S., Sun, Y., Tong, X., Xie, Y., Liu, B., Yang, H., Zheng, H., Li, J., Li, B., Wang, Y., Yang, F., Sun, P., Liu, S., Gao, P., Huang, H., Sun, J., Chen, D. & 21 others, He, G., Huang, W., Huang, Z., Li, Y., Tellier, L. C. A. M., Liu, X., Feng, Q., Xu, X., Zhang, X., Bolund, L., Krogh, A., Kristiansen, K., Drmanac, R., Drmanac, S., Nielsen, R., Li, S., Wang, J., Yang, H., Li, Y., Wong, G. K-S. & Wang, J., 2015, In: Nature Biotechnology. 33, 6, p. 617-626 10 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  51 Citations (Scopus)

• Discovery, genotyping and characterization of structural variation and novel sequence at single nucleotide resolution from de novo genome assemblies on a population scale

  Danish Pan Genome Consortium, Belling, K. G. & Rasmussen, S., 2015, In: GigaScience. 4, 13 p., 64.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  15 Citations (Scopus)

  472 Downloads (Pure)

• Drosophila Imp iCLIP identifies an RNA assemblage coordinating F-actin formation

  Hansen, H. T., Rasmussen, S. H., Adolph, S. K., Plass, M., Krogh, A., Sanford, J., Nielsen, F. C. & Christiansen, J., 2015, In: Genome Biology (Online Edition). 16, 16 p., 123.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  24 Citations (Scopus)

  468 Downloads (Pure)

• Novel variation and de novo mutation rates in population-wide de novo assembled Danish trios

  Besenbacher, S., Liu, S., Gonzalez-Izarzugaza, J. M., Grove, J., Belling, K. G., Bork-Jensen, J., Huang, S., Als, T. D., Li, S., Yadav, R., Rubio García, A., Lescai, F., Demontis, D., Rao, J., Ye, W., Mailund, T., Møllegaard Friborg, R., Pedersen, C. N. S., Xu, R., Sun, J. & 27 others, Liu, H., Wang, O., Cheng, X., Flores, D., Rydza, E. K., Rapacki, K., Sørensen, J. D., Chmura, P. J., Westergaard, D., Dworzynski, P., Sørensen, T. I. A., Lund, O., Hansen, T., Xu, X., Li, N., Bolund, L., Pedersen, O., Eiberg, H., Krogh, A., Børglum, A. D., Brunak, S., Kristiansen, K., Schierup, M. H., Wang, J., Gupta, R., Villesen, P. & Rasmussen, S., 2015, In: Nature Communications. 6, 9 p., 5969.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  128 Citations (Scopus)

  241 Downloads (Pure)

• SHAPE selection (SHAPES) enrich for RNA structure signal in SHAPE sequencing-based probing data

  Poulsen, L. D., Kielpinski, L. J., Salama, S. R., Krogh, A. & Vinther, J., 2015, In: R N A. 21, 5, p. 1042-1052 11 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  40 Citations (Scopus)

  293 Downloads (Pure)

• Transcriptome dynamics of the microRNA inhibition response

  Wen, J., Leucci, E., Vendramin, R., Kauppinen, S., Lund, A. H., Krogh, A. & Parker, B. J., 2015, In: Nucleic Acids Research. 43, 13, p. 6207-6221 15 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  5 Citations (Scopus)

  244 Downloads (Pure)
• 2014

  Adaptable probabilistic mapping of short reads using position specific scoring matrices

  Kerpedjiev, P., Frellsen, J., Lindgreen, S. & Krogh, A., 2014, In: B M C Bioinformatics. 15, 17 p., 15:100.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  34 Citations (Scopus)

  1665 Downloads (Pure)

• Adaptations to a subterranean environment and longevity revealed by the analysis of mole rat genomes

  Fang, X., Seim, I., Huang, Z., Gerashchenko, M. V., Xiong, Z., Turanov, A. A., Zhu, Y., Lobanov, A. V., Fan, D., Yim, S. H., Yao, X., Ma, S., Yang, L., Lee, S-G., Kim, E. B., Bronson, R. T., Sumbera, R., Buffenstein, R., Zhou, X., Krogh, A. & 4 others, Park, T. J., Zhang, G., Wang, J. & Gladyshev, V. N., 2014, In: Cell Reports. 8, 5, p. 1354-1364 11 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  109 Citations (Scopus)

  2469 Downloads (Pure)

• Alternative polyadenylation of tumor suppressor genes in small intestinal neuroendocrine tumors

  Rehfeld, A. A., Plass, M., Døssing, K., Knigge, U., Kjær, A., Krogh, A. & Friis-Hansen, L. J., 2014, In: Frontiers in Endocrinology. 5, 10 p., 46.

  Research output: Contribution to journal › Journal article › Research › peer-review
  14 Citations (Scopus)

• Bayesian transcriptome assembly

  Sørensen, L. M., Sibbesen, J. A. & Krogh, A., 2014, In: Genome Biology (Online Edition). 15, 10, 11 p., 501.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  41 Citations (Scopus)

  1150 Downloads (Pure)

• Comparing cancer vs normal gene expression profiles identifies new disease entities and common transcriptional programs in AML patients

  Rapin, N. P. J-P., Bagger, F. O., Jendholm, L. J., Mora-Jensen, H., Krogh, A., Kohlmann, A., Thiede, C., Borregaard, N., Bullinger, L., Winther, O., Theilgaard-Mönch, K. & Porse, B. T., 6 Feb 2014, In: Blood (online). 123, 6, p. 894-904 11 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  114 Citations (Scopus)

• Genome-wide adaptive complexes to underground stresses in blind mole rats Spalax

  Fang, X., Nevo, E., Han, L., Levanon, E. Y., Zhao, J., Avivi, A., Larkin, D., Jiang, X., Feranchuk, S., Zhu, Y., Fishman, A., Feng, Y., Sher, N., Xiong, Z., Hankeln, T., Huang, Z., Gorbunova, V., Zhang, L., Zhao, W., Wildman, D. E. & 33 others, Xiong, Y., Gudkov, A., Zheng, Q., Rechavi, G., Liu, S., Bazak, L., Chen, J., Knisbacher, B. A., Lu, Y., Shams, I., Gajda, K., Farre, M., Kim, J., Lewin, H. A., Ma, J., Band, M., Bicker, A., Kranz, A., Mattheus, T., Schmidt, H., Seluanov, A., Azpurua, J., McGowen, M. R., Ben Jacob, E., Li, K., Peng, S., Zhu, X., Liao, X., Li, S., Krogh, A., Zhou, X., Brodsky, L. & Wang, J., 2014, In: Nature Communications. 5, 9 p., 3966.

  Research output: Contribution to journal › Journal article › Research › peer-review
  118 Citations (Scopus)

• Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome

  Pedersen, J. S., Valen, E., Velazquez, A. M. V., Parker, B. J., Rasmussen, M., Lindgreen, S., Lilje, B., Tobin, D. J., Kelly, T. K., Vang, S., Andersson, R., Jones, P. A., Hoover, C. A., Tikhonov, A., Prokhortchouk, E., Rubin, E. M., Sandelin, A. G., Gilbert, M. T. P., Krogh, A., Willerslev, E. & 1 others, Orlando, L. A. A., 2014, In: Genome Research. 24, 3, p. 454-466 13 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  126 Citations (Scopus)

  421 Downloads (Pure)

• Rapid detection of structural variation in a human genome using nanochannel-based genome mapping technology

  Cao, H., Hastie, A. R., Cao, D., Lam, E. T., Sun, Y., Huang, H., Liu, X., Lin, L., Andrews, W., Chan, S., Huang, S., Tong, X., Requa, M., Anantharaman, T., Krogh, A., Yang, H., Cao, H. & Xu, X., 2014, In: GigaScience. 3, 11 p., 34.

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  95 Citations (Scopus)

  1063 Downloads (Pure)

• SNPest: a probabilistic graphical model for estimating genotypes

  Lindgreen, S., Krogh, A. & Pedersen, J. S., 2014, In: BMC Research Notes. 7, 12 p., 298.

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  5 Citations (Scopus)

  362 Downloads (Pure)

• Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization

  Qin, C., Yu, C., Shen, Y., Fang, X., Chen, L., Min, J., Cheng, J., Zhao, S., Xu, M., Luo, Y., Yang, Y., Wu, Z., Mao, L., Wu, H., Ling-Hu, C., Zhou, H., Lin, H., Gonzalez-Morales, S., Trejo-Saavedra, D. L., Tian, H. & 53 others, Tang, X., Zhao, M., Huang, Z., Zhou, A., Yao, X., Cui, J., Li, W., Chen, Z., Feng, Y., Niu, Y., Bi, S., Yang, X., Li, W., Cai, H., Luo, X., Montes-Hernandez, S., Leyva-Gonzalez, M. A., Xiong, Z., He, X., Bai, L., Tan, S., Tang, X., Liu, D., Liu, J., Zhang, S., Chen, M., Zhang, L., Zhang, L., Zhang, Y., Liao, W., Zhang, Y., Wang, M., Lv, X., Wen, B., Liu, H., Luan, H., Zhang, Y., Yang, S., Wang, X., Xu, J., Li, X., Li, S., Wang, J., Palloix, A., Bosland, P. W., Li, Y., Krogh, A., Rivera-Bustamante, R. F., Herrera-Estrella, L., Yin, Y., Yu, J., Hu, K. & Zhang, Z., 2014, In: Proceedings of the National Academy of Sciences of the United States of America. 111, 14, p. 5135-5140 6 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  621 Citations (Scopus)
• 2013

  A short-read multiplex sequencing method for reliable, cost-effective and high-throughput genotyping in large-scale studies: [plus] Erratum

  Cao, H., Wang, Y., Zhang, W., Chai, X., Zhang, X., Chen, S., Yang, F., Zhang, C., Guo, Y., Liu, Y., Tang, Z., Chen, C., Xue, Y., Zhen, H., Xu, Y., Rao, B., Liu, T., Zhao, M., Zhang, W., Li, Y. & 6 others, Zhang, X., Tellier, L. C. A. M., Krogh, A., Kristiansen, K., Wang, J. & Li, J., 2013, In: Human Mutation. 34, 12, p. 1715-1720 6 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  42 Citations (Scopus)

• cWords - systematic microRNA regulatory motif discovery from mRNA expression data

  Rasmussen, S. H., Jacobsen, A. & Krogh, A., 2013, In: Silence. 4, 2, 9 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  26 Citations (Scopus)

• Genome analysis reveals insights into physiology and longevity of the Brandt's bat Myotis brandtii

  Seim, I., Fang, X., Xiong, Z., Lobanov, A. V., Huang, Z., Ma, S., Feng, Y., Turanov, A. A., Zhu, Y., Lenz, T. L., Gerashchenko, M. V., Fan, D., Yim, S. H., Yao, X., Jordan, D., Xiong, Y., Ma, Y., Lyapunov, A. N., Chen, G., Kulakova, O. I. & 9 others, Sun, Y., Lee, S-G., Bronson, R. T., Moskalev, A. A., Sunyaev, S. R., Zhang, G., Krogh, A., Wang, J. & Gladyshev, V. N., 2013, In: Nature Communications. 4, 8 p., 2212.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  196 Citations (Scopus)

  2190 Downloads (Pure)

• Loss of miR-10a activates Lpo and collaborates with activated Wnt signaling in inducing intestinal Neoplasia in female mice

  Stadthagen Gomez, G., Tehler, D. E., Høyland-Kroghsbo, N. M., Wen, J., Krogh, A., Jensen, K. T., Santoni Rugiu, E., Engelholm, L. H. & Lund, A. H., 2013, In: P L o S Genetics. 9, 10, 12 p., e1003913.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  36 Citations (Scopus)

  3308 Downloads (Pure)

• Reconstructing genome evolution in historic samples of the Irish potato famine pathogen

  Martin, M. D., Cappellini, E., Samaniego Castruita, J. A., Zepeda Mendoza, M. L., Campos, P., Seguin-Orlando, A., Wales, N., Orlando, L. A. A., Ho, S. Y. W., Dietrich, F. S., Mieczkowski, P. A., Heitman, J., Willerslev, E., Krogh, A., Ristaino, J. B. & Gilbert, T., 18 Jul 2013, In: Nature Communications. 4, 7 p., 2172.

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  101 Citations (Scopus)

  6393 Downloads (Pure)
• 2012

  Improving ancient DNA read mapping against modern reference genomes

  Schubert, M., Ginolhac, A., Lindgreen, S., Thompson, J. F., Al-Rasheid, K. A. S., Willerslev, E., Krogh, A. & Orlando, L. A. A., 2012, In: BMC Genomics. 13, 15 p., 178.

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  142 Citations (Scopus)

  3543 Downloads (Pure)

• Mammalian tissues defective in nonsense-mediated mRNA decay display highly aberrant splicing patterns

  Weischenfeldt, J. L., Waage, J. E., Tian, G., Zhao, J., Damgaard, I., Jakobsen, J. S., Kristiansen, K., Krogh, A., Wang, J. & Porse, B. T., 2012, In: Genome Biology (Online Edition). 13, 5, 19 p.

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  95 Citations (Scopus)

  2823 Downloads (Pure)

• microRNA-143 down-regulates Hexokinase 2 in colon cancer cells

  Gregersen, L. H., Jacobsen, A., Frankel, L., Wen, J., Krogh, A. & Lund, A. H., 2012, In: B M C Cancer. 12, 232, 23 p.

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  88 Citations (Scopus)

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• microRNA-146a inhibits G protein-coupled receptor-mediated activation of NF-κB by targeting CARD10 and COPS8 in gastric cancer

  Crone, S. G., Jacobsen, A., Federspiel, B., Bardram, L., Krogh, A., Lund, A. H. & Friis-Hansen, L., 2012, In: Molecular Cancer. 11, 71, p. 71 31 p.

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  72 Citations (Scopus)

  3511 Downloads (Pure)
• 2011

  An Aboriginal Australian genome reveals separate human dispersals into Asia

  Rasmussen, M., Guo, X., Wang, Y., Lohmueller, K. E., Rasmussen, S., Albrechtsen, A., Skotte, L., Lindgreen, S., Metspalu, M., Jombart, T., Kivisild, T., Zhai, W., Eriksson, A., Manica, A., Orlando, L., De La Vega, F. M., Tridico, S., Metspalu, E., Nielsen, K., Avila Arcos, M. D. C. & 38 others, Moreno Mayar, J. V., Muller, C., Dortch, J., Gilbert, T., Lund, O., Wesolowska, A., Karmin, M., Weinert, L. A., Wang, B., Li, J., Tai, S., Xiao, F., Hanihara, T., van Driem, G., Jha, A. R., Ricaut, F-X., de Knijff, P., Migliano, A. B., Gallego Romero, I., Kristiansen, K., Lambert, D. M., Brunak, S., Forster, P., Brinkmann, B., Nehlich, O., Bunce, M., Richards, M., Gupta, R., Bustamante, C. D., Krogh, A., Foley, R. A., Lahr, M. M., Balloux, F., Sicheritz-Pontén, T., Villems, R., Nielsen, R., Wang, J. & Willerslev, E., 2011, In: Science. 334, 6052, p. 94-98 5 p.

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  501 Citations (Scopus)

• microRNA-101 is a potent inhibitor of autophagy

  Frankel, L. B., Wen, J., Lees, M., Høyer-Hansen, M., Farkas, T., Krogh, A., Jäättelä, M. & Lund, A. H., 2011, In: E M B O Journal. 30, p. 4628-4641 14 p.

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  308 Citations (Scopus)