Research output per year
Research output per year
- 1 - 50 out of 52 results
Search results
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2024
A comparison of short-read, HiFi long-read, and hybrid strategies for genome-resolved metagenomics
Eisenhofer, R., Nesme, J., Santos-Bay, L., Koziol, A., Sørensen, S. J., Alberdi, A. & Aizpurua, O., 2024, In: Microbiology Spectrum. 12, 4, 14 p., e03590-23.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile4 Citations (Scopus)16 Downloads (Pure) -
A practical introduction to holo-omics
Odriozola, I., Rasmussen, J. A., Gilbert, M. T. P., Limborg, M. T. & Alberdi, A., 2024, In: Cell Reports Methods. 4, 7, 12 p., 100820.Research output: Contribution to journal › Review › Research › peer-review
Open AccessFile -
Bat diversity boosts ecosystem services: Evidence from pine processionary moth predation
Augusto, A. M., Raposeira, H., Horta, P., Mata, V. A., Aizpurua, O., Alberdi, A., Jones, G., Razgour, O., Santos, S. A. P., Russo, D. & Rebelo, H., 2024, In: Science of the Total Environment. 912, 10 p., 169387.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile5 Downloads (Pure) -
DNA metabarcoding reveals seasonal changes in diet composition across four arthropod-eating lizard species (Phrynosomatidae: Sceloporus)
Hernández, M., Hereira-Pacheco, S., Alberdi, A., De La Vega-Pérez, A. H. D., Estrada-Torres, A., Ancona, S. & Navarro-Noya, Y. E., 2024, In: Integrative Zoology. 19, 3, p. 480-495 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile2 Citations (Scopus)4 Downloads (Pure) -
Field and laboratory guidelines for reliable bioinformatic and statistical analysis of bacterial shotgun metagenomic data
Aizpurua, O., Dunn, R. R., Hansen, L. H., Gilbert, M. T. P. & Alberdi, A., 2024, In: Critical Reviews in Biotechnology. 44, 6, p. 1164-1182Research output: Contribution to journal › Review › Research › peer-review
1 Citation (Scopus) -
Going urban: variation in personality traits of an invasive species along an urbanization gradient
Tranquillo, C., Santicchia, F., Romeo, C., Bisi, F., Panzeri, M., Preatoni, D., Martinoli, A., Alberdi, A. & Wauters, L. A., 2024, (E-pub ahead of print) In: Journal of Mammalogy.Research output: Contribution to journal › Journal article › Research › peer-review
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Seasonal dietary changes relate to gut microbiota composition depending on the host species but do not correlate with gut microbiota diversity in arthropod-eating lizards
Hernández, M., Ancona, S., Hereira-Pacheco, S., de la Vega-Pérez, A. H. D., Alberdi, A. & Navarro-Noya, Y. E., 2024, In: Molecular Ecology. 33, 14, 15 p., e17426.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile -
2023
A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants
Rice, E. S., Alberdi, A., Alfieri, J., Athrey, G., Balacco, J. R., Bardou, P., Blackmon, H., Charles, M., Cheng, H. H., Fedrigo, O., Fiddaman, S. R., Formenti, G., Frantz, L. A. F., Gilbert, M. T. P., Hearn, C. J., Jarvis, E. D., Klopp, C., Marcos, S., Mason, A. S., Velez-Irizarry, D. & 2 others, , 2023, In: BMC Biology. 21, 17 p., 267.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile3 Citations (Scopus)14 Downloads (Pure) -
A simplified protocol for DNA extraction from FTA cards for faecal microbiome studies
Botnen, A. B., Bjørnsen, M. B., Alberdi, A., Gilbert, M. T. P. & Aizpurua, O., 2023, In: Heliyon. 9, 1, 10 p., e12861.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile32 Downloads (Pure) -
A species-level trait dataset of bats in Europe and beyond
Froidevaux, J. S. P., Toshkova, N., Barbaro, L., Benítez-López, A., Kerbiriou, C., Le Viol, I., Pacifici, M., Santini, L., Stawski, C., Russo, D., Dekker, J., Alberdi, A., Amorim, F., Ancillotto, L., Barré, K., Bas, Y., Cantú-Salazar, L., Dechmann, D. K. N., Devaux, T., Eldegard, K. & 28 others, , 2023, In: Scientific Data. 10, 13 p., 253.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile15 Downloads (Pure) -
Bacterial topography of the upper and lower respiratory tract in pigs
Pirolo, M., Espinosa-Gongora, C., Alberdi, A., Eisenhofer, R., Soverini, M., Eriksen, E. Ø., Pedersen, K. S. & Guardabassi, L., 2023, In: BMC Animal Microbiome. 5, 13 p., 5.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile7 Citations (Scopus)24 Downloads (Pure) -
Impact of microbial genome completeness on metagenomic functional inference
Eisenhofer, R., Odriozola, I. & Alberdi, A., 2023, In: ISME communications. 3, 5 p., 12.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile23 Downloads (Pure) -
Mammals show distinct functional gut microbiome dynamics to identical series of environmental stressors
Koziol, A., Odriozola, I., Leonard, A., Eisenhofer, R., José, C. S., Aizpurua, O. & Alberdi, A., 2023, In: mBio. 14, 5, 17 p., e01606-23.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile4 Citations (Scopus)16 Downloads (Pure) -
Unravelling animal–microbiota evolution on a chip
Aizpurua, O., Blijleven, K., Trivedi, U., Gilbert, M. T. P. & Alberdi, A., 2023, In: Trends in Microbiology. 31, 10, p. 995-1002 8 p.Research output: Contribution to journal › Review › Research › peer-review
2 Citations (Scopus) -
2022
Disentangling host–microbiota complexity through hologenomics
Alberdi, A., Andersen, S. B., Limborg, M. T., Dunn, R. R. & Gilbert, M. T. P., 2022, In: Nature Reviews Genetics. 23, 5, p. 281-297 17 p.Research output: Contribution to journal › Review › Research › peer-review
File11 Downloads (Pure) -
Enriching captivity conditions with natural elements does not prevent the loss of wild-like gut microbiota but shapes its compositional variation in two small mammals
Koziol, A., Odriozola, I., Nyholm, L., Leonard, A., San Jose, C., Pauperio, J., Ferreira, C., Hansen, A. J., Aizpurua, O., Gilbert, M. T. P. & Alberdi, A., 2022, In: MicrobiologyOpen. 11, 5, 19 p., e1318.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile6 Citations (Scopus)39 Downloads (Pure) -
Gut microbiota differences between paired intestinal wall and digesta samples in three small species of fish
Nyholm, L., Odriozola, I., Martin Bideguren, G., Aizpurua, O. & Alberdi, A., 2022, In: PeerJ. 10, 22 p., e12992.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile6 Citations (Scopus)20 Downloads (Pure) -
Novel strategies to improve chicken performance and welfare by unveiling host-microbiota interactions through hologenomics
Tous, N., Marcos, S., Goodarzi Boroojeni, F., Pérez de Rozas, A., Zentek, J., Estonba, A., Sandvang, D., Gilbert, M. T. P., Esteve-Garcia, E., Finn, R., Alberdi, A. & Tarradas, J., 2022, In: Frontiers in Physiology. 13, 14 p., 884925.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile3 Citations (Scopus)19 Downloads (Pure) -
Recovering High-Quality Host Genomes from Gut Metagenomic Data through Genotype Imputation
Marcos, S., Parejo, M., Estonba, A. & Alberdi, A., 2022, In: Advanced Genetics. 3, 3, 14 p., 2100065.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile13 Downloads (Pure) -
The Contribution of Desert-Dwelling Bats to Pest Control in Hyper-Arid Date Agriculture
Schackermann, J., Morris, E. J. J., Alberdi, A., Razgour, O. & Korine, C., 2022, In: Diversity. 14, 12, 14 p., 1034.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile2 Citations (Scopus)13 Downloads (Pure) -
2021
Broad-scale patterns of geographic avoidance between species emerge in the absence of fine-scale mechanisms of coexistence
Novella-Fernandez, R., Juste, J., Ibáñez, C., Rebelo, H., Russo, D., Alberdi, A., Kiefer, A., Graham, L., Paul, H., Doncaster, C. P. & Razgour, O., 2021, In: Diversity and Distributions. 27, 9, p. 1606-1618 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile38 Downloads (Pure) -
Diversity and compositional changes in the gut microbiota of wild and captive vertebrates: a meta-analysis
Alberdi, A., Martin Bideguren, G. & Aizpurua, O., 2021, In: Scientific Reports. 11, 10 p., 22660.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile31 Downloads (Pure) -
The gut microbiome buffers dietary adaptation in Bronze Age domesticated dogs
Rampelli, S., Turroni, S., Debandi, F., Alberdi, A., Schnorr, S. L., Hofman, C. A., Taddia, A., Helg, R., Biagi, E., Brigidi, P., D'Amico, F., Cattani, M. & Candela, M., 2021, In: iScience. 24, 8, 20 p., 102816.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile26 Downloads (Pure) -
The role of the gut microbiota in the dietary niche expansion of fishing bats
Aizpurua, O., Nyholm, L., Morris, E., Chaverri, G., Montalvo, L. G. H., Flores-Martinez, J. J., Lin, A., Razgour, O., Gilbert, M. T. P. & Alberdi, A., 2021, In: BMC Animal Microbiome. 3, 14 p., 76.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile10 Citations (Scopus)44 Downloads (Pure) -
2020
Comparative Microbiome Analysis Reveals the Ecological Relationships Between Rumen Methanogens, Acetogens, and Their Hosts
Li, Z., Wang, X., Alberdi, A., Deng, J., Zhong, Z., Si, H., Zheng, C., Zhou, H., Wang, J., Yang, Y., Wright, A. D. G., Mao, S., Zhang, Z., Guan, L. & Li, G., 2020, In: Frontiers in Microbiology. 11, 14 p., 1311.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile14 Citations (Scopus)23 Downloads (Pure) -
DNA metabarcoding and spatial modelling link diet diversification with distribution homogeneity in European bats
Alberdi, A., Razgour, O., Aizpurua, O., Novella-Fernandez, R., Aihartza, J., Budinski, I., Garin, I., Ibanez, C., Izagirre, E., Rebelo, H., Russo, D., Vlaschenko, A., Zhelyazkova, V., Zrncic, V. & Gilbert, M. T. P., 2020, In: Nature Communications. 11, 8 p., 1154.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile45 Citations (Scopus)113 Downloads (Pure) -
Holo-Omics: Integrated Host-Microbiota Multi-omics for Basic and Applied Biological Research
Nyholm, L., Koziol, A., Marcos, S., Botnen, A. B., Aizpurua, O., Gopalakrishnan, S., Limborg, M. T., Gilbert, M. T. P. & Alberdi, A., 2020, In: iScience. 23, 8, p. 1-16 101414.Research output: Contribution to journal › Review › Research › peer-review
Open AccessFile79 Citations (Scopus)148 Downloads (Pure) -
The long-term restoration of ecosystem complexity
Moreno-Mateos, D., Alberdi, A., Morrien, E., van der Putten, W. H., Rodriguez-Una, A. & Montoya, D., May 2020, In: Nature Ecology & Evolution. 4, 5, p. 676-685 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
26 Citations (Scopus) -
2019
A guide to the application of Hill numbers to DNA-based diversity analyses
Alberdi, A. & Gilbert, M. T. P., 2019, In: Molecular Ecology Resources. 19, 4, p. 804-817 14 p.Research output: Contribution to journal › Review › Research › peer-review
111 Citations (Scopus) -
Considering adaptive genetic variation in climate change vulnerability assessment reduces species range loss projections
Razgour, O., Forester, B., Taggart, J. B., Bekaert, M., Juste, J., Ibáñez, C., Puechmaille, S. J., Novella-Fernandez, R., Alberdi, A. & Manel, S., 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 21, p. 10418-10423 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile294 Citations (Scopus)19 Downloads (Pure) -
Host-derived population genomics data provides insights into bacterial and diatom composition of the killer whale skin
Hooper, R., Brealey, J. C., van der Valk, T., Alberdi, A., Durban, J. W., Fearnbach, H., Robertson, K. M., Baird, R. W., Bradley Hanson, M., Wade, P., Gilbert, M. T. P., Morin, P. A., Wolf, J. B. W., Foote, A. D. & Guschanski, K., 2019, In: Molecular Ecology. 28, 2, p. 484-502 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile34 Citations (Scopus)110 Downloads (Pure) -
Promises and pitfalls of using high-throughput sequencing for diet analysis
Alberdi, A., Aizpurua, O., Bohmann, K., Gopalakrishnan, S., Lynggaard, C., Nielsen, M. & Gilbert, M. T. P., Mar 2019, In: Molecular Ecology Resources. 19, 2, p. 327-348Research output: Contribution to journal › Review › Research › peer-review
49 Citations (Scopus) -
2018
Agriculture shapes the trophic niche of a bat preying on multiple pest arthropods across Europe: Evidence from DNA metabarcoding
Aizpurua, O., Budinski, I., Georgiakakis, P., Gopalakrishnan, S., Ibanez, C., Mata, V., Rebelo, H., Russo, D., Szodoray-Paradi, F., Zhelyazkova, V., Zrncic, V., Gilbert, T. & Alberdi, A., 2018, In: Molecular Ecology. 27, 3, p. 815-825 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
101 Citations (Scopus) -
An integrated framework to identify wildlife populations under threat from climate change
Razgour, O., Taggart, J. B., Manel, S., Juste, J., Ibanez, C., Rebelo, H., Alberdi, A., Jones, G. & Park, K., 2018, In: Molecular Ecology Resources. 18, 1, p. 18-31 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile34 Citations (Scopus)190 Downloads (Pure) -
Applied Hologenomics: Feasibility and Potential in Aquaculture
Limborg, M. T., Alberdi, A., Kodama, M., Roggenbuck, M., Kristiansen, K. & Gilbert, M. T. P., 2018, In: Trends in Biotechnology. 36, 3, p. 252-264 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile46 Citations (Scopus)377 Downloads (Pure) -
Assessing niche partitioning of co-occurring sibling bat species by DNA metabarcoding
Arrizabalaga-Escudero, A., Clare, E. L., Salsamendi, E., Alberdi, A., Garin, I., Aihartza, J. & Goiti, U., 2018, In: Molecular Ecology. 27, 5, p. 1273-1283 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
47 Citations (Scopus) -
Ecology and evolutionary biology of fishing bats
Aizpurua, O. & Alberdi, A., 2018, In: Mammal Review. 48, 4, p. 284-297Research output: Contribution to journal › Review › Research › peer-review
8 Citations (Scopus) -
Plecotus macrobullaris (Chiroptera: Vespertilionidae)
Alberdi, A. & Aizpurua, O., 2018, In: Mammalian Species. 50, 958, p. 26-33Research output: Contribution to journal › Journal article › Research › peer-review
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Scrutinizing key steps for reliable metabarcoding of environmental samples
Alberdi, A., Aizpurua, O., Gilbert, M. T. P. & Bohmann, K., 2018, In: Methods in Ecology and Evolution. 9, 1, p. 134-147 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
427 Citations (Scopus) -
2016
Do vertebrate gut metagenomes confer rapid ecological adaptation?
Alberdi, A., Aizpurua, O., Bohmann, K., Zepeda Mendoza, M. L. & Gilbert, T., Sep 2016, In: Trends in Ecology & Evolution. 31, 9, p. 689-699 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
86 Citations (Scopus) -
Fishing technique of long-fingered bats was developed from a primary reaction to disappearing target stimuli
Aizpurua, O., Alberdi, A., Aihartza, J. & Garin, I., 2016, In: P L o S One. 11, 12, 12 p., e0167164.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile5 Citations (Scopus)109 Downloads (Pure) -
The mitogenome of a 35,000-year-old Homo sapiens from Europe supports a Palaeolithic back-migration to Africa
Hervella, M., Svensson, E. M., Alberdi Estibaritz, A., Günther, T., Izagirre, N., Munters, A. R., Alonso, S., Ioana, M., Ridiche, F., Soficaru, A., Jakobsson, M., Netea, M. G. & de-la-Rua, C., 19 May 2016, In: Scientific Reports. 6, 5 p., 25501.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile22 Citations (Scopus)234 Downloads (Pure) -
Unveiling the hidden bat diversity of a Neotropical montane forest
Chaverri, G., Garin, I., Alberdi, A., Jimenez, L., Castillo-Salazar, C. & Aihartza, J., 5 Oct 2016, In: P L o S One. 11, 10, 19 p., e0162712.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile6 Citations (Scopus)164 Downloads (Pure) -
2015
Insight on how fishing bats discern prey and adjust their mechanic and sensorial features during the attack sequence
Aizpurua, O., Alberdi, A., Aihartza, J. & Garin, I., 2015, In: Scientific Reports. 5, 8 p., 12392.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile9 Citations (Scopus)12 Downloads (Pure) -
Living above the treeline: roosting ecology of the alpine bat Plecotus macrobullaris
Alberdi, A., Aihartza, J., Aizpurua, O., Salsamendi, E., Brigham, R. M. & Garin, I., 2015, In: European Journal of Wildlife Research. 61, 1, p. 17-25 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
11 Citations (Scopus) -
Trophic requirements beyond foraging habitats: the importance of prey source habitats in bat conservation
Arrizabalaga-Escudero, A., Garin, I., García-Mudarra, J. L., Alberdi, A., Aihartza, J. & Goiti, U., 2015, In: Biological Conservation. 191, p. 512-519 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile40 Citations (Scopus)44 Downloads (Pure) -
2014
Can pinewoods provide habitat for a deciduous forest specialist? a two-scale approach to the habitat selection of Bechstein's bat
Arrizabalaga-Escudero, A., Napal, M., Aihartza, J., Garin, I., Alberdi, A. & Salsamendi, E., 2014, In: Mammalian Biology. 79, 2, p. 117-122 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
1 Citation (Scopus) -
Fine-tuned echolocation and capture-flight of Myotis capaccinii when facing different-sized insect and fish prey
Aizpurua, O., Aihartza, J., Alberdi, A., Baagøe, H. J. & Garin, I., 2014, In: Journal of Experimental Biology. 217, 18, p. 3318-3325 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
11 Citations (Scopus) -
Unveiling the factors shaping the distribution of widely distributed alpine vertebrates, using multi-scale ecological niche modelling of the bat Plecotus macrobullaris
Alberdi, A., Aizpurua, O., Aihartza, J. & Garin, I., 2014, In: Frontiers in Zoology. 11, 13 p., 77.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile11 Citations (Scopus)18 Downloads (Pure) -
2013
Review on the geographic and elevational distribution of the mountain long-eared bat Plecotus macrobullaris, completed by utilising a specific mist-netting technique
Alberdi, A., Garin, I., Aizpurua, O. & Aihartza, J., 2013, In: Acta Chiropterologica. 15, 2, p. 451-461 11 p.Research output: Contribution to journal › Review › Research › peer-review
12 Citations (Scopus)