Research output per year
Research output per year
- 1 - 50 out of 51 results
Search results
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2025
Contrasting recovery of metagenome‑assembled genomes and derived bacterial communities and functional profiles from lizard fecal and cloacal samples
Hernández, M., Langa, J., Aizpurua, O., Navarro-Noya, Y. E. & Alberdi, A., 2025, In: Animal Microbiome. 7, 10 p., 15.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile4 Downloads (Pure) -
HoloFood Data Portal: holo-omic datasets for analysing host–microbiota interactions in animal production
Rogers, A. B., Kale, V., Baldi, G., Alberdi, A., Gilbert, M. T. P., Gupta, D., Limborg, M. T., Li, S., Payne, T., Petersen, B., Rasmussen, J. A., Richardson, L. & Finn, R. D., 2025, In: Database. 2025, 8 p., baae112.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile4 Downloads (Pure) -
Hologenomic data generation and analysis in wild vertebrates
Pietroni, C., Gaun, N., Leonard, A., Lauritsen, J., Martin-Bideguren, G., Odriozola, I., Aizpurua, O., Alberdi, A. & Eisenhofer, R., 2025, In: Methods in Ecology and Evolution. 16, 1, p. 97-107 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile1 Citation (Scopus)2 Downloads (Pure) -
Landscape influences bat suppression of pine processionary moth: Implications for pest management
Augusto, A. M., Pereira, S., Rodrigues, S., Marques, F., Aizpurua, O., Alberdi, A., Jones, G., Razgour, O., Marques, T. A., Russo, D. & Rebelo, H., 2025, In: Journal of Environmental Management. 373, 10 p., 123803.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile -
2024
A comparison of short-read, HiFi long-read, and hybrid strategies for genome-resolved metagenomics
Eisenhofer, R., Nesme, J., Santos-Bay, L., Koziol, A., Sørensen, S. J., Alberdi, A. & Aizpurua, O., 2024, In: Microbiology Spectrum. 12, 4, 14 p., e03590-23.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile8 Citations (Scopus)30 Downloads (Pure) -
A global initiative for ecological and evolutionary hologenomics
Leonard, A., Alberdi, A., Martin Bideguren, G. (Member of author collaboration) & Earth Hologenome Initiative Consortium, 2024, In: Trends in Ecology & Evolution. 39, 7, p. 616-620 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
3 Citations (Scopus) -
Bat diversity boosts ecosystem services: Evidence from pine processionary moth predation
Augusto, A. M., Raposeira, H., Horta, P., Mata, V. A., Aizpurua, O., Alberdi, A., Jones, G., Razgour, O., Santos, S. A. P., Russo, D. & Rebelo, H., 2024, In: Science of the Total Environment. 912, 10 p., 169387.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile3 Citations (Scopus)13 Downloads (Pure) -
DNA metabarcoding reveals seasonal changes in diet composition across four arthropod-eating lizard species (Phrynosomatidae: Sceloporus)
Hernández, M., Hereira-Pacheco, S., Alberdi, A., De La Vega-Pérez, A. H. D., Estrada-Torres, A., Ancona, S. & Navarro-Noya, Y. E., 2024, In: Integrative Zoology. 19, 3, p. 480-495 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile2 Citations (Scopus)8 Downloads (Pure) -
Going urban: variation in personality traits of an invasive species along an urbanization gradient
Tranquillo, C., Santicchia, F., Romeo, C., Bisi, F., Panzeri, M., Preatoni, D., Martinoli, A., Alberdi, A. & Wauters, L. A., 2024, In: Journal of Mammalogy. 105, 6, p. 1300-1308 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
2 Citations (Scopus) -
Positive impact of early-probiotic administration on performance parameters, intestinal health and microbiota populations in broiler chickens
Hussain, M., Aizpurua, O., de Rozas, A. P., París, N., Guivernau, M., Jofré, A., Tous, N., Ng'ang'a, Z. W., Alberdi, A., Rodríguez-Gallego, E., Kogut, M. H. & Tarradas, J., 2024, In: Poultry Science. 103, 12, 16 p., 104401.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile3 Downloads (Pure) -
Quantifying microbial DNA in metagenomes improves microbial trait estimation
Eisenhofer, R., Alberdi, A. & Woodcroft, B. J., 2024, In: ISME communications. 4, 1, 4 p., ycae111.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile1 Downloads (Pure) -
Seasonal dietary changes relate to gut microbiota composition depending on the host species but do not correlate with gut microbiota diversity in arthropod-eating lizards
Hernández, M., Ancona, S., Hereira-Pacheco, S., de la Vega-Pérez, A. H. D., Alberdi, A. & Navarro-Noya, Y. E., 2024, In: Molecular Ecology. 33, 14, 15 p., e17426.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile3 Citations (Scopus) -
The disciplinary matrix of holobiont biology: Uniting life's seen and unseen realms guides a conceptual advance in research
Bordenstein, S. R., Gilbert, M. T. P., Ginnan, N., Malacrinò, A., Martino, M. E., Bahrndorff, S., Mundra, S., Martin, M. D., Theis, K. R., Hird, S. M., Caro-Quintero, A., Sharpton, T. J., Kohl, K. D., Barnes, C. J., Eisenhofer, R., Aizpurua, O., Andersen, S. B., Brealey, J. C., Noer, C. L. & Medina, M. & 3 others, , 2024, In: Science. 386, 6723, p. 731-732 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
4 Citations (Scopus) -
2023
A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants
Rice, E. S., Alberdi, A., Alfieri, J., Athrey, G., Balacco, J. R., Bardou, P., Blackmon, H., Charles, M., Cheng, H. H., Fedrigo, O., Fiddaman, S. R., Formenti, G., Frantz, L. A. F., Gilbert, M. T. P., Hearn, C. J., Jarvis, E. D., Klopp, C., Marcos, S., Mason, A. S. & Velez-Irizarry, D. & 2 others, , 2023, In: BMC Biology. 21, 17 p., 267.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile16 Citations (Scopus)19 Downloads (Pure) -
A simplified protocol for DNA extraction from FTA cards for faecal microbiome studies
Botnen, A. B., Bjørnsen, M. B., Alberdi, A., Gilbert, M. T. P. & Aizpurua, O., 2023, In: Heliyon. 9, 1, 10 p., e12861.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile4 Citations (Scopus)46 Downloads (Pure) -
A species-level trait dataset of bats in Europe and beyond
Froidevaux, J. S. P., Toshkova, N., Barbaro, L., Benítez-López, A., Kerbiriou, C., Le Viol, I., Pacifici, M., Santini, L., Stawski, C., Russo, D., Dekker, J., Alberdi, A., Amorim, F., Ancillotto, L., Barré, K., Bas, Y., Cantú-Salazar, L., Dechmann, D. K. N., Devaux, T. & Eldegard, K. & 28 others, , 2023, In: Scientific Data. 10, 13 p., 253.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile17 Citations (Scopus)20 Downloads (Pure) -
Bacterial topography of the upper and lower respiratory tract in pigs
Pirolo, M., Espinosa-Gongora, C., Alberdi, A., Eisenhofer, R., Soverini, M., Eriksen, E. Ø., Pedersen, K. S. & Guardabassi, L., 2023, In: BMC Animal Microbiome. 5, 13 p., 5.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile9 Citations (Scopus)32 Downloads (Pure) -
Impact of microbial genome completeness on metagenomic functional inference
Eisenhofer, R., Odriozola, I. & Alberdi, A., 2023, In: ISME communications. 3, 5 p., 12.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile33 Downloads (Pure) -
Mammals show distinct functional gut microbiome dynamics to identical series of environmental stressors
Koziol, A., Odriozola, I., Leonard, A., Eisenhofer, R., José, C. S., Aizpurua, O. & Alberdi, A., 2023, In: mBio. 14, 5, 17 p., e01606-23.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile11 Citations (Scopus)21 Downloads (Pure) -
2022
Enriching captivity conditions with natural elements does not prevent the loss of wild-like gut microbiota but shapes its compositional variation in two small mammals
Koziol, A., Odriozola, I., Nyholm, L., Leonard, A., San Jose, C., Pauperio, J., Ferreira, C., Hansen, A. J., Aizpurua, O., Gilbert, M. T. P. & Alberdi, A., 2022, In: MicrobiologyOpen. 11, 5, 19 p., e1318.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile7 Citations (Scopus)46 Downloads (Pure) -
Gut microbiota differences between paired intestinal wall and digesta samples in three small species of fish
Nyholm, L., Odriozola, I., Martin Bideguren, G., Aizpurua, O. & Alberdi, A., 2022, In: PeerJ. 10, 22 p., e12992.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile7 Citations (Scopus)23 Downloads (Pure) -
Novel strategies to improve chicken performance and welfare by unveiling host-microbiota interactions through hologenomics
Tous, N., Marcos, S., Goodarzi Boroojeni, F., Pérez de Rozas, A., Zentek, J., Estonba, A., Sandvang, D., Gilbert, M. T. P., Esteve-Garcia, E., Finn, R., Alberdi, A. & Tarradas, J., 2022, In: Frontiers in Physiology. 13, 14 p., 884925.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile8 Citations (Scopus)21 Downloads (Pure) -
Recovering High-Quality Host Genomes from Gut Metagenomic Data through Genotype Imputation
Marcos, S., Parejo, M., Estonba, A. & Alberdi, A., 2022, In: Advanced Genetics. 3, 3, 14 p., 2100065.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile26 Downloads (Pure) -
The Contribution of Desert-Dwelling Bats to Pest Control in Hyper-Arid Date Agriculture
Schackermann, J., Morris, E. J. J., Alberdi, A., Razgour, O. & Korine, C., 2022, In: Diversity. 14, 12, 14 p., 1034.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile6 Citations (Scopus)14 Downloads (Pure) -
2021
Broad-scale patterns of geographic avoidance between species emerge in the absence of fine-scale mechanisms of coexistence
Novella-Fernandez, R., Juste, J., Ibáñez, C., Rebelo, H., Russo, D., Alberdi, A., Kiefer, A., Graham, L., Paul, H., Doncaster, C. P. & Razgour, O., 2021, In: Diversity and Distributions. 27, 9, p. 1606-1618 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile11 Citations (Scopus)43 Downloads (Pure) -
Diversity and compositional changes in the gut microbiota of wild and captive vertebrates: a meta-analysis
Alberdi, A., Martin Bideguren, G. & Aizpurua, O., 2021, In: Scientific Reports. 11, 10 p., 22660.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile41 Citations (Scopus)49 Downloads (Pure) -
The gut microbiome buffers dietary adaptation in Bronze Age domesticated dogs
Rampelli, S., Turroni, S., Debandi, F., Alberdi, A., Schnorr, S. L., Hofman, C. A., Taddia, A., Helg, R., Biagi, E., Brigidi, P., D'Amico, F., Cattani, M. & Candela, M., 2021, In: iScience. 24, 8, 20 p., 102816.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile6 Citations (Scopus)29 Downloads (Pure) -
The role of the gut microbiota in the dietary niche expansion of fishing bats
Aizpurua, O., Nyholm, L., Morris, E., Chaverri, G., Montalvo, L. G. H., Flores-Martinez, J. J., Lin, A., Razgour, O., Gilbert, M. T. P. & Alberdi, A., 2021, In: BMC Animal Microbiome. 3, 14 p., 76.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile16 Citations (Scopus)45 Downloads (Pure) -
2020
Comparative Microbiome Analysis Reveals the Ecological Relationships Between Rumen Methanogens, Acetogens, and Their Hosts
Li, Z., Wang, X., Alberdi, A., Deng, J., Zhong, Z., Si, H., Zheng, C., Zhou, H., Wang, J., Yang, Y., Wright, A. D. G., Mao, S., Zhang, Z., Guan, L. & Li, G., 2020, In: Frontiers in Microbiology. 11, 14 p., 1311.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile19 Citations (Scopus)27 Downloads (Pure) -
DNA metabarcoding and spatial modelling link diet diversification with distribution homogeneity in European bats
Alberdi, A., Razgour, O., Aizpurua, O., Novella-Fernandez, R., Aihartza, J., Budinski, I., Garin, I., Ibanez, C., Izagirre, E., Rebelo, H., Russo, D., Vlaschenko, A., Zhelyazkova, V., Zrncic, V. & Gilbert, M. T. P., 2020, In: Nature Communications. 11, 8 p., 1154.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile48 Citations (Scopus)120 Downloads (Pure) -
The long-term restoration of ecosystem complexity
Moreno-Mateos, D., Alberdi, A., Morrien, E., van der Putten, W. H., Rodriguez-Una, A. & Montoya, D., May 2020, In: Nature Ecology & Evolution. 4, 5, p. 676-685 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
195 Citations (Scopus) -
2019
Considering adaptive genetic variation in climate change vulnerability assessment reduces species range loss projections
Razgour, O., Forester, B., Taggart, J. B., Bekaert, M., Juste, J., Ibáñez, C., Puechmaille, S. J., Novella-Fernandez, R., Alberdi, A. & Manel, S., 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 21, p. 10418-10423 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile316 Citations (Scopus)26 Downloads (Pure) -
Host-derived population genomics data provides insights into bacterial and diatom composition of the killer whale skin
Hooper, R., Brealey, J. C., van der Valk, T., Alberdi, A., Durban, J. W., Fearnbach, H., Robertson, K. M., Baird, R. W., Bradley Hanson, M., Wade, P., Gilbert, M. T. P., Morin, P. A., Wolf, J. B. W., Foote, A. D. & Guschanski, K., 2019, In: Molecular Ecology. 28, 2, p. 484-502 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile35 Citations (Scopus)119 Downloads (Pure) -
2018
Agriculture shapes the trophic niche of a bat preying on multiple pest arthropods across Europe: Evidence from DNA metabarcoding
Aizpurua, O., Budinski, I., Georgiakakis, P., Gopalakrishnan, S., Ibanez, C., Mata, V., Rebelo, H., Russo, D., Szodoray-Paradi, F., Zhelyazkova, V., Zrncic, V., Gilbert, T. & Alberdi, A., 1 Feb 2018, In: Molecular Ecology. 27, 3, p. 815-825 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
110 Citations (Scopus) -
An integrated framework to identify wildlife populations under threat from climate change
Razgour, O., Taggart, J. B., Manel, S., Juste, J., Ibanez, C., Rebelo, H., Alberdi, A., Jones, G. & Park, K., Jan 2018, In: Molecular Ecology Resources. 18, 1, p. 18-31 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile64 Citations (Scopus)203 Downloads (Pure) -
Applied Hologenomics: Feasibility and Potential in Aquaculture
Limborg, M. T., Alberdi, A., Kodama, M., Roggenbuck, M., Kristiansen, K. & Gilbert, M. T. P., Mar 2018, In: Trends in Biotechnology. 36, 3, p. 252-264 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile57 Citations (Scopus)427 Downloads (Pure) -
Assessing niche partitioning of co-occurring sibling bat species by DNA metabarcoding
Arrizabalaga-Escudero, A., Clare, E. L., Salsamendi, E., Alberdi, A., Garin, I., Aihartza, J. & Goiti, U., Mar 2018, In: Molecular Ecology. 27, 5, p. 1273-1283 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
54 Citations (Scopus) -
Plecotus macrobullaris (Chiroptera: Vespertilionidae)
Alberdi, A. & Aizpurua, O., 2018, In: Mammalian Species. 50, 958, p. 26-33Research output: Contribution to journal › Journal article › Research › peer-review
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Scrutinizing key steps for reliable metabarcoding of environmental samples
Alberdi, A., Aizpurua, O., Gilbert, M. T. P. & Bohmann, K., Jan 2018, In: Methods in Ecology and Evolution. 9, 1, p. 134-147 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
475 Citations (Scopus) -
2016
Do vertebrate gut metagenomes confer rapid ecological adaptation?
Alberdi, A., Aizpurua, O., Bohmann, K., Zepeda Mendoza, M. L. & Gilbert, T., Sept 2016, In: Trends in Ecology & Evolution. 31, 9, p. 689-699 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
240 Citations (Scopus) -
Fishing technique of long-fingered bats was developed from a primary reaction to disappearing target stimuli
Aizpurua, O., Alberdi, A., Aihartza, J. & Garin, I., 2016, In: P L o S One. 11, 12, 12 p., e0167164.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile7 Citations (Scopus)117 Downloads (Pure) -
The mitogenome of a 35,000-year-old Homo sapiens from Europe supports a Palaeolithic back-migration to Africa
Hervella, M., Svensson, E. M., Alberdi Estibaritz, A., Günther, T., Izagirre, N., Munters, A. R., Alonso, S., Ioana, M., Ridiche, F., Soficaru, A., Jakobsson, M., Netea, M. G. & de-la-Rua, C., 19 May 2016, In: Scientific Reports. 6, 5 p., 25501.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile22 Citations (Scopus)243 Downloads (Pure) -
Unveiling the hidden bat diversity of a Neotropical montane forest
Chaverri, G., Garin, I., Alberdi, A., Jimenez, L., Castillo-Salazar, C. & Aihartza, J., 5 Oct 2016, In: P L o S One. 11, 10, 19 p., e0162712.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile15 Citations (Scopus)169 Downloads (Pure) -
2015
Insight on how fishing bats discern prey and adjust their mechanic and sensorial features during the attack sequence
Aizpurua, O., Alberdi, A., Aihartza, J. & Garin, I., 2015, In: Scientific Reports. 5, 8 p., 12392.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile9 Citations (Scopus)17 Downloads (Pure) -
Living above the treeline: roosting ecology of the alpine bat Plecotus macrobullaris
Alberdi, A., Aihartza, J., Aizpurua, O., Salsamendi, E., Brigham, R. M. & Garin, I., 2015, In: European Journal of Wildlife Research. 61, 1, p. 17-25 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
11 Citations (Scopus) -
Trophic requirements beyond foraging habitats: the importance of prey source habitats in bat conservation
Arrizabalaga-Escudero, A., Garin, I., García-Mudarra, J. L., Alberdi, A., Aihartza, J. & Goiti, U., 2015, In: Biological Conservation. 191, p. 512-519 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile45 Citations (Scopus)47 Downloads (Pure) -
2014
Can pinewoods provide habitat for a deciduous forest specialist? a two-scale approach to the habitat selection of Bechstein's bat
Arrizabalaga-Escudero, A., Napal, M., Aihartza, J., Garin, I., Alberdi, A. & Salsamendi, E., 2014, In: Mammalian Biology. 79, 2, p. 117-122 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
1 Citation (Scopus) -
Fine-tuned echolocation and capture-flight of Myotis capaccinii when facing different-sized insect and fish prey
Aizpurua, O., Aihartza, J., Alberdi, A., Baagøe, H. J. & Garin, I., 2014, In: Journal of Experimental Biology. 217, 18, p. 3318-3325 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
12 Citations (Scopus) -
Unveiling the factors shaping the distribution of widely distributed alpine vertebrates, using multi-scale ecological niche modelling of the bat Plecotus macrobullaris
Alberdi, A., Aizpurua, O., Aihartza, J. & Garin, I., 2014, In: Frontiers in Zoology. 11, 13 p., 77.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile11 Citations (Scopus)22 Downloads (Pure) -
2012
First records of the parti-coloured bat Vespertilio murinus (Chiroptera: Vespertilionidae) in the Pyrenees
Alberdi, A., Aihartza, J., Albero, J. C., Aizpurua, O., López-Baucells, A., Freixas, L., Puig, X., Flaquer, C. & Garin, I., 2012, In: Mammalia. 76, 1, p. 109-111 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
7 Citations (Scopus)