Personal profile
Short presentation
Short Presentation
Dr. Atul Shahaji Deshmukh is an Associate Professor and Group Leader at the Novo Nordisk Foundation Center for Basic Metabolic Research (CBMR) in Copenhagen, Denmark. He received his PhD from the Karolinska Institute under the supervision of Prof. Juleen Zierath, and completed his postdoctoral training at the Max Planck Institute of Biochemistry with Prof. Matthias Mann, where he gained deep expertise in mass spectrometry-based proteomics. Dr. Deshmukh’s group applies advanced proteomics technologies in combination with in vivo and in vitro models to uncover how diet and physical activity reshape protein networks and impact metabolic health. He has published extensively in high-impact journals and was awarded the EFSD/NNF Future Leaders Award in 2019 for his work on exercise-induced proteins.
Primary Field of Research
Metabolic health is regulated by a dynamic interplay between genetic background and environmental factors such as diet and physical activity. The global rise in sedentary behavior and excess caloric intake has led to an alarming increase in obesity and type 2 diabetes—complex, multifactorial diseases characterized by insulin resistance, particularly in skeletal muscle.
Despite strong evidence that exercise improves metabolic health, the molecular mechanisms remain poorly understood. These processes are mediated by proteins, which regulate signaling, communication between organs, and cellular function.
The Deshmukh Group uses state-of-the-art proteomics to investigate protein-driven mechanisms that regulate metabolism under both healthy and disease conditions. We focus on:
- Secreted proteins and inter organ communication
- Post-translational modifications (PTMs) and intracellular signaling
- Single-fiber and cell-type-specific analyses of muscle plasticity and adaptation
- Subcellular and spatial proteomics
Our work aims to identify novel biomarkers, elucidate mechanisms of disease progression, and contribute to the development of protein-based therapeutics. We collaborate closely with other hospitals, academic institutions worldwide, and industry partners to accelerate translation of our findings.
Keywords
- Faculty of Health and Medical Sciences
- Functional Proteomics
- Secretomics
- Physical Activity
- Type 2 Diabetes
- Metabolism
- Obesity
- Diet
Collaborations and top research areas from the last five years
-
Clenbuterol, but not Inhaled Formoterol, Upregulates the Sarcomere Stabilizer KLHL41 to a Similar Extent as Resistance Training in Human Skeletal Muscle
Hostrup, M., Moesgaard, L., Thomassen, M., Deshmukh, A. & Jessen, S., 2026, In: Drug Testing and Analysis. 18, 1, p. 66-73Research output: Contribution to journal › Journal article › Research › peer-review
-
Fibre Type–Specific Proteomics Reveals Shared and Distinct Skeletal Muscle Adaptations to Resistance Training and Beta2-Adrenergic Agonist
Jessen, S., Di Credico, A., Moreno-Justicia, R., Moesgaard, L., Lemminger, A., Stocks, B., Di Baldassarre, A., Bangsbo, J., Deshmukh, A. & Hostrup, M., 2026, In: Journal of Cachexia, Sarcopenia and Muscle. 17, 1, 15 p., e70175.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile1 Downloads (Pure) -
Consensus Statements-Optimizing Performance of the Elite Athlete
Bangsbo, J., Hostrup, M., Hellsten, Y., Hansen, M., Melin, A., Kjaer, M., Burr, J. F., Engebretsen, L., Egan, B., Hackney, A. C., Chambers, T. L., Jones, A. M., Pitsiladis, Y., Magnusson, P., Petersen, J., Deshmukh, A. S., Calbet, J. A. L., Elliott-Sale, K., Joyner, M. & Andersen, J. L. & 8 others, , 2025, In: Scandinavian Journal of Medicine & Science in Sports. 35, 8, 10 p., e70112.Research output: Contribution to journal › Review › peer-review
Open AccessFile5 Citations (Scopus)44 Downloads (Pure) -
Dysregulated skeletal muscle myosin super-relaxation and energetics in male participants with type 2 diabetes mellitus
Lewis, C. T. A., Moreno-Justicia, R., Savoure, L., Calvo, E., Bak, A., Laitila, J., Seaborne, R. A. E., Larsen, S., Iwamoto, H., Cefis, M., Morais, J. A., Gouspillou, G., Alegre-Cebollada, J., Hawke, T. J., Vazquez, J., Adrover, M., Marcangeli, V., Hammad, R., Granet, J. & Gaudreau, P. & 5 others, , 2025, In: Diabetologia. 68, p. 1836–1850Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile17 Downloads (Pure) -
Fiber Type–Specific Adaptations to Exercise Training in Human Skeletal Muscle: Lessons From Proteome Analyses and Future Directions
Hostrup, M. & Deshmukh, A. S., 2025, In: Scandinavian Journal of Medicine and Science in Sports. 35, 5, 9 p., e70059.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile5 Citations (Scopus)11 Downloads (Pure) -
Global proteomics reveals distinct muscle adaptations to menstrual cycle phase-based sprint interval training in endurance-trained females.
Kissow, J., Jacobsen, K. J., Jessen, S., Thomsen, L. B., Quesada, J. P., Bangsbo, J., Deshmukh, A. S. & Hostrup, M., 2025, In: Molecular & cellular proteomics : MCP. 24, 10, 11 p., 101053.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile6 Downloads (Pure) -
Hepatocyte dedifferentiation in 2D culture reveals extensive transcriptomic and proteomic rewiring
Dall, M., Stocks, B., Cervone, D. T., Deshmukh, A. S. & Treebak, J. T., 2025, In: Hepatology Communications. 9, 11, 18 p., e0795.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile6 Downloads (Pure) -
Histamine mediates food intake, but not muscle adaptations, following 10 weeks of resistance training in humans
Van de Loock, A., Vandecauter, J., Ullrich, M., Lievens, E., Schroé, H., Moreno-Justicia, R., Weyns, A., Van Thienen, R., Calders, P., Deshmukh, A. S., Van der Stede, T. & Derave, W., 2025, (Accepted/In press) In: Journal of Physiology.Research output: Contribution to journal › Journal article › Research › peer-review