Charleen Gaunitz

2024

Elevated genetic risk for multiple sclerosis emerged in steppe pastoralist populations

Barrie, W., Yang, Y., Irving-Pease, E. K., Attfield, K. E., Scorrano, G., Jensen, L. T., Armen, A. P., Dimopoulos, E. A., Stern, A., Refoyo-Martinez, A., Pearson, A., Ramsøe, A., Gaunitz, C., Demeter, F., Jørkov, M. L. S., Møller, S. B., Springborg, B., Klassen, L., Hyldgård, I. M., Wickmann, N. & 11 others, Vinner, L., Korneliussen, T. S., Allentoft, M. E., Sikora, M., Kristiansen, K., Rodriguez, S., Nielsen, R., Iversen, A. K. N., Lawson, D. J., Fugger, L. & Willerslev, E., 2024, In: Nature. 625, 7994, p. 321-328

Research output: Contribution to journal › Journal article › Research › peer-review

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27 Citations (Scopus)

44 Downloads (Pure)

Population genomics of post-glacial western Eurasia

Allentoft, M. E., Sikora, M., Refoyo-Martínez, A., Irving-Pease, E. K., Fischer, A., Barrie, W., Ingason, A., Stenderup, J., Sjögren, K-G., Pearson, A., da Mota, B. S., Paulsson, B. S., Halgren, A., Macleod, R., Jørkov, M. L. S., Demeter, F., Sørensen, L., Nielsen, P. O., Henriksen, R. A., Vimala, T. & 144 others, McColl, H., Margaryan, A., Ilardo, M., Vaughn, A., Mortensen, M. F., Nielsen, A. B., Hede, M. U., Johannsen, N. N., Rasmussen, P., Vinner, L., Renaud, G., Stern, A., Jensen, T. Z. T., Scorrano, G., Schroeder, H., Lysdahl, P., Ramsøe, A. D., Skorobogatov, A., Schork, A. J., Rosengren, A., Ruter, A., Outram, A., Timoshenko, A. A., Buzhilova, A., Coppa, A., Zubova, A., Silva, A. M., Hansen, A. J., Gromov, A., Logvin, A., Gotfredsen, A. B., Nielsen, B. H., González-Rabanal, B., Lalueza-Fox, C., McKenzie, C. J., Gaunitz, C., Blasco, C., Liesau, C., Martinez-Labarga, C., Pozdnyakov, D. V., Cuenca-Solana, D., Lordkipanidze, D. O., En’shin, D., Salazar-García, D. C., Price, T. D., Borić, D., Kostyleva, E., Veselovskaya, E. V., Usmanova, E. R., Cappellini, E., Petersen, E. B., Kannegaard, E., Radina, F., Yediay, F. E., Duday, H., Gutiérrez-Zugasti, I., Merts, I., Potekhina, I., Shevnina, I., Altinkaya, I., Guilaine, J., Hansen, J., Tortosa, J. E. A., Zilhão, J., Vega, J., Pedersen, K. B., Tunia, K., Zhao, L., Mylnikova, L. N., Larsson, L., Metz, L., Yepiskoposyan, L., Pedersen, L., Sarti, L., Orlando, L., Slimak, L., Klassen, L., Blank, M., González-Morales, M., Silvestrini, M., Vretemark, M., Nesterova, M. S., Rykun, M., Rolfo, M. F., Szmyt, M., Przybyła, M., Calattini, M., Sablin, M., Dobisíková, M., Meldgaard, M., Johansen, M., Berezina, N., Card, N., Saveliev, N. A., Poshekhonova, O., Rickards, O., Lozovskaya, O. V., Gábor, O., Uldum, O. C., Aurino, P., Kosintsev, P., Courtaud, P., Ríos, P., Mortensen, P., Lotz, P., Persson, P., Bangsgaard, P., de Barros Damgaard, P., Vang Petersen, P., Martinez, P. P., Włodarczak, P., Smolyaninov, R. V., Maring, R., Menduiña, R., Badalyan, R., Iversen, R., Turin, R., Vasilyev, S., Wåhlin, S., Borutskaya, S., Skochina, S., Sørensen, S. A., Andersen, S. H., Jørgensen, T., Serikov, Y. B., Molodin, V. I., Smrcka, V., Merts, V., Appadurai, V., Moiseyev, V., Magnusson, Y., Kjær, K. H., Lynnerup, N., Lawson, D. J., Sudmant, P. H., Rasmussen, S., Korneliussen, T. S., Durbin, R., Nielsen, R., Delaneau, O., Werge, T., Racimo, F., Kristiansen, K. & Willerslev, E., 2024, In: Nature. 625, 7994, p. 301-311

Research output: Contribution to journal › Journal article › Research › peer-review

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27 Citations (Scopus)

64 Downloads (Pure)

Repeated plague infections across six generations of Neolithic Farmers

Seersholm, F. V., Sjögren, K. G., Koelman, J., Blank, M., Svensson, E. M., Staring, J., Fraser, M., Pinotti, T., McColl, H., Gaunitz, C., Ruiz-Bedoya, T., Granehäll, L., Villegas-Ramirez, B., Fischer, A., Price, T. D., Allentoft, M. E., Iversen, A. K. N., Axelsson, T., Ahlström, T., Götherström, A. & 6 others, Storå, J., Kristiansen, K., Willerslev, E., Jakobsson, M., Malmström, H. & Sikora, M., 2024, In: Nature. 632, 8023, p. 114-121 8 p.

Research output: Contribution to journal › Journal article › Research › peer-review

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Widespread horse-based mobility arose around 2200 bce in Eurasia

Librado, P., Tressières, G., Chauvey, L., Fages, A., Khan, N., Schiavinato, S., Calvière-Tonasso, L., Kusliy, M. A., Gaunitz, C., Liu, X., Wagner, S., Der Sarkissian, C., Seguin-Orlando, A., Perdereau, A., Aury, J-M., Southon, J., Shapiro, B., Bouchez, O., Donnadieu, C., Collin, Y. R. H. & 121 others, Gregersen, K. M., Jessen, M. D., Christensen, K., Claudi-Hansen, L., Pruvost, M., Pucher, E., Vulic, H., Novak, M., Rimpf, A., Turk, P., Reiter, S., Brem, G., Schwall, C., Barrey, É., Robert, C., Degueurce, C., Horwitz, L. K., Klassen, L., Rasmussen, U., Kveiborg, J., Johannsen, N. N., Makowiecki, D., Makarowicz, P., Szeliga, M., Ilchyshyn, V., Rud, V., Romaniszyn, J., Mullin, V. E., Verdugo, M., Bradley, D. G., Cardoso, J. L., Valente, M. J., Telles Antunes, M., Ameen, C., Thomas, R., Ludwig, A., Marzullo, M., Prato, O., Bagnasco Gianni, G., Tecchiati, U., Granado, J., Schlumbaum, A., Deschler-Erb, S., Mráz, M. S., Boulbes, N., Gardeisen, A., Mayer, C., Döhle, H-J., Vicze, M., Kosintsev, P. A., Kyselý, R., Peške, L., O’Connor, T., Ananyevskaya, E., Shevnina, I., Logvin, A., Kovalev, A. A., Iderkhangai, T-O., Sablin, M. V., Dashkovskiy, P. K., Graphodatsky, A. S., Merts, I., Merts, V., Kasparov, A. K., Pitulko, V. V., Onar, V., Öztan, A., Arbuckle, B. S., McColl, H., Renaud, G., Khaskhanov, R., Demidenko, S., Kadieva, A., Atabiev, B., Sundqvist, M., Lindgren, G., López-Cachero, F. J., Albizuri, S., Trbojević Vukičević, T., Rapan Papeša, A., Burić, M., Šikanjić, P. R., Weinstock, J., Asensio Vilaró, D., Codina, F., García Dalmau, C., de Llorens, J. M., Pou, J., de Prado, G., Sanmartí, J., Kallala, N., Torres, J. R., Maraoui-Telmini, B., Franco, M-C. B., Valenzuela-Lamas, S., Zazzo, A., Lepetz, S., Duchesne, S., Alexeev, A., Bayarsaikhan, J., Houle, J-L., Bayarkhuu, N., Turbat, T., Crubézy, É., Shingiray, I., Mashkour, M., Berezina, N. Y., Korobov, D. S., Belinskiy, A., Kalmykov, A., Demoule, J-P., Reinhold, S., Hansen, S., Wallner, B., Roslyakova, N., Kuznetsov, P. F., Tishkin, A. A., Wincker, P., Kanne, K., Outram, A. & Orlando, L., 2024, In: Nature. 631, 8022, p. 819-825 7 p.

Research output: Contribution to journal › Journal article › Research › peer-review

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7 Citations (Scopus)

1 Downloads (Pure)

2022

A Middle Pleistocene Denisovan molar from the Annamite Chain of northern Laos

Demeter, F., Zanolli, C., Westaway, K. E., Joannes-Boyau, R., Duringer, P., Morley, M. W., Welker, F., Rüther, P. L., Skinner, M. M., McColl, H., Gaunitz, C., Vinner, L., Dunn, T. E., Olsen, J. V., Sikora, M., Ponche, J-L., Suzzoni, E., Frangeul, S., Boesch, Q., Antoine, P-O. & 20 others, Pan, L., Xing, S., Zhao, J-X., Bailey, R. M., Boualaphane, S., Sichanthongtip, P., Sihanam, D., Patole-Edoumba, E., Aubaile, F., Crozier, F., Bourgon, N., Zachwieja, A., Luangkhoth, T., Souksavatdy, V., Sayavongkhamdy, T., Cappellini, E., Bacon, A-M., Hublin, J-J., Willerslev, E. & Shackelford, L., 2022, In: Nature Communications. 13, 17 p., 2557.

Research output: Contribution to journal › Journal article › Research › peer-review

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30 Citations (Scopus)

91 Downloads (Pure)

Genetic risk for Multiple Sclerosis originated in Pastoralist Steppe populations

Barrie, W., Yang, Y., Attfield, K. E., Irving-Pease, E., Scorrano, G., Jensen, L. T., Armen, A. P., Dimopoulos, E. A., Stern, A., Refoyo-Martínez, A., Ramsøe, A., Gaunitz, C., Demeter, F., Jørkov, M. L. S., Møller, S. B., Springborg, B., Klassen, L., Hyldgård, I. M., Wickmann, N., Vinner, L. & 9 others, Korneliussen, T. S., Sikora, M., Kristiansen, K., Rodriguez, S., Nielsen, R., Iversen, A. K. N., Lawson, D. J., Fugger, L. & Willerslev, E., 2022, bioRxiv, 55 p.

Research output: Working paper › Preprint › Research

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57 Downloads (Pure)

Population Genomics of Stone Age Eurasia

Allentoft, M. E., Sikora, M., Refoyo-Martínez, A., Irving-Pease, E. K., Fischer, A., Barrie, W., Ingason, A., Stenderup, J., Sjögren, K-G., Pearson, A., Mota, B., Paulsson, B. S., Halgren, A., Macleod, R., Schjellerup Jørkov, M. L., Demeter, F., Novosolov, M., Sørensen, L., Nielsen, P-O., Henriksen, R. H. A. & 143 others, Vimala, T., McColl, H., Margaryan, A., Ilardo, M., Vaughn, A., Mortensen, M. F., Nielsen, A. B., Hede, M. U., Rasmussen, P., Vinner, L., Renaud, G., Stern, A., Trolle Jensen, T. Z., Johannsen, N. N., Scorrano, G., Schroeder, H., Lysdahl, P., Ramsøe, A. D., Skorobogatov, A., Schork, A. J., Rosengren, A., Ruter, A., Outram, A., Timoshenko, A. A., Buzhilova, A., Coppa, A., Zubova, A., Silva, A. M., Hansen, A. J., Gromov, A., Logvin, A., Gotfredsen, A. B., Nielsen, B. H., González-Rabanal, B., Lalueza-Fox, C., McKenzie, C. J., Gaunitz, C., Blasco, C., Liesau, C., Martinez-Labarga, C., Pozdnyakov, D. V., Cuenca-Solana, D., Lordkipanidze, D. O., En’shin, D., Salazar-García, D. C., Price, T. D., Borić, D., Kostyleva, E., Veselovskaya, E. V., Usmanova, E. R., Cappellini, E., Petersen, E. B., Kannegaard, E., Radina, F., Yediay, F. E., Duday, H., Gutiérrez-Zugasti, I., Potekhina, I., Shevnina, I., Altinkaya, I., Guilaine, J., Hansen, J., Tortosa, J. E. A., Zilhão, J., Vega, J., Pedersen, K. B., Tunia, K., Zhao, L., Mylnikova, L. N., Larsson, L., Metz, L., Yeppiskoposyan, L., Pedersen, L., Sarti, L., Orlando, L., Slimak, L., Klassen, L., Blank, M., González-Morales, M., Silvestrini, M., Vretemark, M., Nesterova, M. S., Rykun, M., Rolfo, M. F., Szmyt, M., Przybyła, M., Calattini, M., Sablin, M., Dobisíková, M., Meldgaard, M., Johansen, M., Berezina, N., Card, N., Saveliev, N. A., Poshekhonova, O., Rickards, O., Lozovskaya, O. V., Uldum, O. C., Aurino, P., Kosintsev, P., Courtaud, P., Ríos, P., Mortensen, P., Lotz, P., Persson, P. Å., Bangsgaard, P., Damgaard, P. D. B., Petersen, P. V., Martinez, P. P., Włodarczak, P., Smolyaninov, R. V., Maring, R., Menduiña, R., Badalyan, R., Iversen, R., Turin, R., Vasilyiev, S., Wåhlin, S., Borutskaya, S., Skochina, S., Sørensen, S. A., Andersen, S. H., Jørgensen, T., Serikov, Y. B., Molodin, V. I., Smrcka, V., Merz, V., Appadurai, V., Moiseyev, V., Magnusson, Y., Kjær, K. H., Lynnerup, N., Lawson, D. J., Sudmant, P. H., Rasmussen, S., Korneliussen, T., Durbin, R., Nielsen, R., Delaneau, O., Werge, T., Racimo, F., Kristiansen, K. & Willerslev, E., 2022, p. 1-71, (bioRxiv).

Research output: Working paper › Preprint › Research

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268 Downloads (Pure)

2020

The mules that are not mules-metrics, morphology, archaeogenomics and mtDNA d-loop diversity in equids from Roman Switzerland

Granado, J. D., Dill, N., Gaunitz, C., Fages, A., Khan, N., Mraz, M. S., Deschler-Erb, S., Orlando, L. & Schlumbaum, A., 2020, In: Journal of Archaeological Science. 123, 9 p., 105253.

Research output: Contribution to journal › Journal article › Research › peer-review

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8 Citations (Scopus)

103 Downloads (Pure)

2019

Reconstructing the History of Biological Changes Underlying Extinction and Domestication Processes: A Tale from Ancient Horse Genomics

Gaunitz, C., 2019, Natural History Museum of Denmark, Faculty of Science, University of Copenhagen.

Research output: Book/Report › Ph.D. thesis › Research

Tracking Five Millennia of Horse Management with Extensive Ancient Genome Time Series

Fages, A., Hanghøj, K., Khan, N., Gaunitz, C., Seguin-Orlando, A., Leonardi, M., McCrory Constantz, C., Gamba, C., Al-Rasheid, K. A. S., Albizuri, S., Alfarhan, A. H., Allentoft, M., Alquraishi, S., Anthony, D., Baimukhanov, N., Barrett, J. H., Bayarsaikhan, J., Benecke, N., Bernáldez-Sánchez, E., Berrocal-Rangel, L. & 101 others, Biglari, F., Boessenkool, S., Boldgiv, B., Brem, G., Brown, D., Burger, J., Crubézy, E., Daugnora, L., Davoudi, H., Damgaard, P. D. B., de los Ángeles de Chorro y de Villa-Ceballos, M., Deschler-Erb, S., Detry, C., Dill, N., do Mar Oom, M., Dohr, A., Ellingvåg, S., Erdenebaatar, D., Fathi, H., Felkel, S., Fernández-Rodríguez, C., García-Viñas, E., Germonpré, M., Granado, J. D., Hallsson, J. H., Hemmer, H., Hofreiter, M., Kasparov, A., Khasanov, M., Khazaeli, R., Kosintsev, P., Kristiansen, K., Kubatbek, T., Kuderna, L., Kuznetsov, P., Laleh, H., Leonard, J. A., Lhuillier, J., Liesau von Lettow-Vorbeck, C., Logvin, A., Lõugas, L., Ludwig, A., Luis, C., Arruda, A. M., Marques-Bonet, T., Matoso Silva, R., Merz, V., Mijiddorj, E., Miller, B. K., Monchalov, O., Mohaseb, F. A., Morales, A., Nieto-Espinet, A., Nistelberger, H., Onar, V., Pálsdóttir, A. H., Pitulko, V., Pitskhelauri, K., Pruvost, M., Rajic Sikanjic, P., Rapan Papeša, A., Roslyakova, N., Sardari, A., Sauer, E., Schafberg, R., Scheu, A., Schibler, J., Schlumbaum, A., Serrand, N., Serres-Armero, A., Shapiro, B., Sheikhi Seno, S., Shevnina, I., Shidrang, S., Southon, J., Star, B., Sykes, N., Taheri, K., Taylor, W., Teegen, W. R., Trbojević Vukičević, T., Trixl, S., Tumen, D., Undrakhbold, S., Usmanova, E., Vahdati, A., Valenzuela-Lamas, S., Viegas, C., Wallner, B., Weinstock, J., Zaibert, V., Clavel, B., Lepetz, S., Mashkour, M., Helgason, A., Stefánsson, K., Barrey, E., Willerslev, E., Outram, A. K., Librado, P. & Orlando, L., 2019, In: Cell. 177, 6, p. 1419-1435, e1-e31

Research output: Contribution to journal › Journal article › Research › peer-review

Open Access

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183 Citations (Scopus)

178 Downloads (Pure)

2018

Ancient genomes revisit the ancestry of domestic and Przewalski's horses

Gaunitz, C., Fages, A. A., Hanghøj, K. E., Albrechtsen, A., Khan, N., Schubert, M., Seguin-Orlando, A., Owens, I. J., Felkel, S., Bignon-Lau, O., Damgaard, P. D. B., Mittnik, A., Mohaseb, A. F., Davoudi, H., Alquraishi, S., Alfarhan, A. H., Al-Rasheid, K. A. S., Crubézy, E., Benecke, N., Olsen, S. & 27 others, Brown, D., Anthony, D., Massy, K., Pitulko, V., Kasparov, A., Brem, G., Hofreiter, M., Mukhtarova, G., Baimukhanov, N., Lõugas, L., Onar, V., Stockhammer, P. W., Krause, J., Boldgiv, B., Undrakhbold, S., Erdenebaatar, D., Lepetz, S., Mashkour, M., Ludwig, A., Wallner, B., Merz, V., Merz, I., Zaibert, V., Willerslev, E., Sanz, P. L., Outram, A. K. & Orlando, L. A. A., 2018, In: Science. 360, 6384, p. 111-114 4 p.

Research output: Contribution to journal › Journal article › Research › peer-review

232 Citations (Scopus)

2017

Ancient genomic changes associated with domestication of the horse

Sanz, P. L., Gamba, C., Gaunitz, C., Der Sarkissian, C., Pruvost, M., Albrechtsen, A., Fages, A. A., Khan, N., Schubert, M., Jagannathan, V., Serres-Armero, A., Kuderna, L. F. K., Povolotskaya, I. S., Seguin-Orlando, A., Lepetz, S., Neuditschko, M., Thèves, C., Alquraishi, S., Alfarhan, A. H., AL-Rasheid, K. & 13 others, Rieder, S., Samashev, Z., Francfort, H-P., Benecke, N., Hofreiter, M., Ludwig, A., Keyser, C., Marques-Bonet, T., Ludes, B., Crubézy, E., Leeb, T., Willerslev, E. & Orlando, L. A. A., 28 Apr 2017, In: Science. 356, 6336, p. 442-445 4 p.

Research output: Contribution to journal › Journal article › Research › peer-review

145 Citations (Scopus)

Experimental conditions improving in-solution target enrichment for ancient DNA

Cruz-Dávalos, D. I., Llamas, B., Gaunitz, C., Fages, A. A., Gamba, C., Soubrier, J., Sanz, P. L., Seguin-Orlando, A., Pruvost, M., Alfarhan, A. H., Alquraishi, S. A., Al-Rasheid, K. A. S., Scheu, A., Beneke, N., Ludwig, A., Cooper, A., Willerslev, E. & Orlando, L. A. A., May 2017, In: Molecular Ecology Resources. 17, 3, p. 508-522 15 p.

Research output: Contribution to journal › Journal article › Research › peer-review

60 Citations (Scopus)

Zonkey: a simple, accurate and sensitive pipeline to genetically identify equine Fl-hybrids in archaeological assemblages

Schubert, M., Mashkour, M., Gaunitz, C., Fages, A. A., Seguin-Orlando, A., Sheikhi, S., Alfarhan, A. H., Alquraishi, S. A., Al-Rasheid, K. A. S., Chuang, R., Ermini, L., Gamba, C., Weinstock, J., Vedat, O. & Orlando, L. A. A., Feb 2017, In: Journal of Archaeological Science. 78, p. 147-157 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

43 Citations (Scopus)

2016

Comparing the performance of three ancient DNA extraction methods for high-throughput sequencing

Gamba, C., Hanghøj, K. E., Gaunitz, C., Alfarhan, A. H., Alquraishi, S. A., Al-Rasheid, K. A. S., Bradley, D. G. & Orlando, L. A. A., 2016, In: Molecular Ecology Resources. 16, 2, p. 459-469 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

125 Citations (Scopus)

The evolutionary origin and genetic makeup of domestic horses

Sanz, P. L., Fages, A. A., Gaunitz, C., Leonardi, M., Wagner, S., Khan, N., Hanghøj, K. E., Alquraishi, S. A., Alfarhan, A. H., Al-Rasheid, K. A., Der Sarkissian, C., Schubert, M. & Orlando, L. A. A., Oct 2016, In: Genetics. 204, 2, p. 423-434 12 p.

Research output: Contribution to journal › Review › Research › peer-review

57 Citations (Scopus)

Charleen Gaunitz

Research output

Search results