Research output per year
Research output per year
- 26 results
Search results
-
2024
ClockstaRX: Testing Molecular Clock Hypotheses With Genomic Data
Duchêne, D. A., Duchêne, S., Stiller, J., Heller, R. & Ho, S. Y. W., 2024, In: Genome Biology and Evolution. 16, 4, 7 p., evae064.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile8 Downloads (Pure) -
Complexity of avian evolution revealed by family-level genomes
Stiller, J., Feng, S., Chowdhury, A-A., Rivas-González, I., Duchêne, D. A., Fang, Q., Deng, Y., Kozlov, A., Stamatakis, A., Claramunt, S., Nguyen, J. M. T., Ho, S. Y. W., Faircloth, B. C., Haag, J., Houde, P., Cracraft, J., Balaban, M., Mai, U., Chen, G., Gao, R. & 32 others, , 2024, In: Nature. 629, p. 851–860 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile24 Citations (Scopus)20 Downloads (Pure) -
The limits of the constant-rate birth-death prior for phylogenetic tree topology inference
Khurana, M. P., Scheidwasser-Clow, N., Penn, M. J., Bhatt, S. & Duchêne, D. A., 2024, In: Systematic Biology. 73, 1, p. 235–246 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile1 Citation (Scopus)9 Downloads (Pure) -
2023
A genomic assessment of the marine-speciation paradox within the toothed whale superfamily Delphinoidea
Westbury, M. V., Cabrera, A. A., Rey-Iglesia, A., De Cahsan, B., Duchêne, D. A., Hartmann, S. & Lorenzen, E. D., 2023, In: Molecular Ecology. 32, 17, p. 4829-4843 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile2 Citations (Scopus)25 Downloads (Pure) -
ClockstaRX: testing molecular clock hypotheses with genomic data
Duchêne, D. A., Duchêne, S., Stiller, J., Heller, R. & Ho, S. Y. W., 2023, bioRxiv, 15 p.Research output: Working paper › Preprint › Research
File22 Downloads (Pure) -
Leaping through Tree Space: Continuous Phylogenetic Inference for Rooted and Unrooted Trees
Penn, M. J., Scheidwasser, N. A., Penn, J., Donnelly, C. A., Duchene, D. & Bhatt, S., 2023, In: Genome Biology and Evolution. 15, 12, 17 p., evad213.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile10 Downloads (Pure) -
2022
Bird lineages colonizing urban habitats have diversified at high rates across deep time
Iglesias-Carrasco, M., Tobias, J. A. & Duchêne, D. A., 2022, In: Global Ecology and Biogeography. 31, 9, p. 1784-1793 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile2 Citations (Scopus)11 Downloads (Pure) -
Blue Turns to Gray: Paleogenomic Insights into the Evolutionary History and Extinction of the Blue Antelope (Hippotragus leucophaeus)
Hempel, E., Bibi, F., Faith, J. T., Koepfli, K-P., Klittich, A. M., Duchêne, D. A., Brink, J. S., Kalthoff, D. C., Dalén, L., Hofreiter, M. & Westbury, M. V., 2022, In: Molecular Biology and Evolution. 39, 12, 16 p., msac241.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile6 Citations (Scopus)16 Downloads (Pure) -
Environmental niche and flight intensity are associated with molecular evolutionary rates in a large avian radiation
Montoya, P., Cadena, C. D., Claramunt, S. & Duchêne, D. A., Dec 2022, In: BMC Ecology and Evolution. 22, 10 p., 95.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile3 Citations (Scopus)16 Downloads (Pure) -
Evolutionary Rate Variation Among Lineages in Gene Trees has a Negative Impact on Species-Tree Inference
Vankan, M., Ho, S. Y. W. & Duchene Garzon, D. A., 2022, In: Systematic Biology. 71, 2, p. 490-500Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile11 Citations (Scopus)13 Downloads (Pure) -
Excluding Loci With Substitution Saturation Improves Inferences From Phylogenomic Data
Duchêne, D. A., Mather, N., Van Der Wal, C. & Ho, S. Y. W., 2022, In: Systematic Biology. 71, 3, p. 676-689Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile20 Citations (Scopus)12 Downloads (Pure) -
Genomic insights into the evolutionary relationships and demographic history of kiwi
Westbury, M. V., De Cahsan, B., Shepherd, L. D., Holdaway, R. N., Duchene, D. A. & Lorenzen, E. D., 2022, In: PLoS ONE. 17, 10, 17 p., e0266430.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile1 Citation (Scopus)19 Downloads (Pure) -
Multiple types of genomic variation contribute to adaptive traits in the mustelid subfamily Guloninae
Derežanin, L., Blažytė, A., Dobrynin, P., Duchêne, D. A., Grau, J. H., Jeon, S., Kliver, S., Koepfli, K-P., Meneghini, D., Preick, M., Tomarovsky, A., Totikov, A., Fickel, J. & Förster, D. W., 2022, In: Molecular Ecology. 31, 10, p. 2898-2919 22 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile8 Citations (Scopus)12 Downloads (Pure) -
Probing the genomic limits of de-extinction in the Christmas Island rat
Lin, J., Duchêne, D., Carøe, C., Smith, O., Ciucani, M. M., Niemann, J., Richmond, D., Greenwood, A. D., MacPhee, R., Zhang, G., Gopalakrishnan, S. & Gilbert, M. T. P., 2022, In: Current Biology. 32, 7, p. 1650-1656.e3Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile8 Citations (Scopus)28 Downloads (Pure) -
2021
Ancient and modern genomes unravel the evolutionary history of the rhinoceros family
Liu, S., Westbury, M. V., Dussex, N., Mitchell, K. J., Sinding, M. H. S., Heintzman, P. D., Duchêne, D. A., Kapp, J. D., von Seth, J., Heiniger, H., Sánchez-Barreiro, F., Margaryan, A., André-Olsen, R., De Cahsan, B., Meng, G., Yang, C., Chen, L., van der Valk, T., Moodley, Y., Rookmaaker, K. & 19 others, , 2021, In: Cell. 184, 19, p. 4874-4885.e16Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile55 Citations (Scopus)48 Downloads (Pure) -
Ecological Specialization and Evolutionary Reticulation in Extant Hyaenidae
Westbury, M. V., Le Duc, D., Duchêne, D. A., Krishnan, A., Prost, S., Rutschmann, S., Grau, J. H., Dalén, L., Weyrich, A., Norén, K., Werdelin, L., Dalerum, F., Schöneberg, T. & Hofreiter, M., 2021, In: Molecular Biology and Evolution. 38, 9, p. 3884-3897 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile13 Citations (Scopus)16 Downloads (Pure) -
Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts
Rasmussen, J. A., Villumsen, K. R., Duchêne, D. A., Puetz, L. C., Delmont, T. O., Sveier, H., Jørgensen, L. V. G., Præbel, K., Martin, M. D., Bojesen, A. M., Gilbert, M. T. P., Kristiansen, K. & Limborg, M. T., 2021, In: Communications Biology. 4, 10 p., 579.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile71 Citations (Scopus)63 Downloads (Pure) -
Phylogenomics
Duchêne, D. A., 11 Oct 2021, In: Current Biology. 31, 19, p. R1177-R1181 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile2 Citations (Scopus)12 Downloads (Pure) -
2020
Accounting for Uncertainty in the Evolutionary Timescale of Green Plants Through Clock-Partitioning and Fossil Calibration Strategies
Nie, Y., Foster, C. S. P., Zhu, T., Yao, R., Duchêne, D. A., Ho, S. Y. W. & Zhong, B., 2020, In: Systematic Biology. 69, 1, p. 1-16Research output: Contribution to journal › Journal article › Research › peer-review
50 Citations (Scopus) -
A Simulation-Based Evaluation of Tip-Dating Under the Fossilized Birth-Death Process
Luo, A., Duchêne, D. A., Zhang, C., Zhu, C-D. & Ho, S. Y. W., 2020, In: Systematic Biology. 69, 2, p. 325-344Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile32 Citations (Scopus)3 Downloads (Pure) -
Linking Branch Lengths across Sets of Loci Provides the Highest Statistical Support for Phylogenetic Inference
Duchene Garzon, D. A., Tong, K. J., Foster, C. S. P., Duchêne, S., Lanfear, R. & Ho, S. Y. W., 2020, In: Molecular Biology and Evolution. 37, 4, p. 1202-1210Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile34 Citations (Scopus)3 Downloads (Pure) -
2019
Sex in the city: sexual selection and urban colonization in passerines
Iglesias-Carrasco, M., Duchêne, D. A., Head, M. L., Møller, A. P. & Cain, K., 2019, In: Biology Letters. 15, 9, 4 p., 20190257.Research output: Contribution to journal › Journal article › Research › peer-review
10 Citations (Scopus) -
2018
Inferring demographic parameters in bacterial genomic data using Bayesian and hybrid phylogenetic methods
Duchene, S., Duchene, D. A., Geoghegan, J. L., Dyson, Z. A., Hawkey, J. & Holt, K. E., 2018, In: BMC Evolutionary Biology. 18, 11 p., 95.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile15 Citations (Scopus)2 Downloads (Pure) -
2015
Tree imbalance causes a bias in phylogenetic estimation of evolutionary timescales using heterochronous sequences
Duchêne, D., Duchêne, S. & Ho, S. Y. W., 2015, In: Molecular Ecology Resources. 15, 4, p. 785-794Research output: Contribution to journal › Journal article › Research › peer-review
31 Citations (Scopus) -
2013
Phylogenetic evidence for recent diversification of obligate coral-dwelling gobies compared with their host corals
Duchene, D., Klanten, S. O., Munday, P. L., Herler, J. & van Herwerden, L., 2013, In: Molecular Phylogenetics and Evolution. 69, 1, p. 123-132Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile21 Citations (Scopus)2 Downloads (Pure) -
Rates of molecular evolution and diversification in plants: chloroplast substitution rates correlate with species-richness in the Proteaceae
Duchene, D. & Bromham, L., 2013, In: BMC Evolutionary Biology. 13, 11 p., 65.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile50 Citations (Scopus)2 Downloads (Pure)