Fernando Racimo

Human genetic structure in Northwest France provides new insights into West European historical demography

Alves, I., Giemza, J., Blum, M. G. B., Bernhardsson, C., Chatel, S., Karakachoff, M., Saint Pierre, A., Herzig, A. F., Olaso, R., Monteil, M., Gallien, V., Cabot, E., Svensson, E., Bacq, D., Baron, E., Berthelier, C., Besse, C., Blanché, H., Bocher, O., Boland, A. & 32 others, Bonnaud, S., Charpentier, E., Dandine-Roulland, C., Férec, C., Fruchet, C., Lecointe, S., Le Floch, E., Ludwig, T. E., Marenne, G., Meyer, V., Quellery, E., Racimo, F., Rouault, K., Sandron, F., Schott, J-J., Velo-Suarez, L., Violleau, J., Willerslev, E., Coativy, Y., Jézéquel, M., Le Bris, D., Nicolas, C., Pailler, Y., Goldberg, M., Zins, M., Le Marec, H., Jakobsson, M., Darlu, P., Génin, E., Deleuze, J. F., Redon, R. & Dina, C., 2024, In: Nature Communications. 15, 18 p., 6710.

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Population genomics of post-glacial western Eurasia

Allentoft, M. E., Sikora, M., Refoyo-Martínez, A., Irving-Pease, E. K., Fischer, A., Barrie, W., Ingason, A., Stenderup, J., Sjögren, K-G., Pearson, A., da Mota, B. S., Paulsson, B. S., Halgren, A., Macleod, R., Jørkov, M. L. S., Demeter, F., Sørensen, L., Nielsen, P. O., Henriksen, R. A., Vimala, T. & 144 others, McColl, H., Margaryan, A., Ilardo, M., Vaughn, A., Mortensen, M. F., Nielsen, A. B., Hede, M. U., Johannsen, N. N., Rasmussen, P., Vinner, L., Renaud, G., Stern, A., Jensen, T. Z. T., Scorrano, G., Schroeder, H., Lysdahl, P., Ramsøe, A. D., Skorobogatov, A., Schork, A. J., Rosengren, A., Ruter, A., Outram, A., Timoshenko, A. A., Buzhilova, A., Coppa, A., Zubova, A., Silva, A. M., Hansen, A. J., Gromov, A., Logvin, A., Gotfredsen, A. B., Nielsen, B. H., González-Rabanal, B., Lalueza-Fox, C., McKenzie, C. J., Gaunitz, C., Blasco, C., Liesau, C., Martinez-Labarga, C., Pozdnyakov, D. V., Cuenca-Solana, D., Lordkipanidze, D. O., En’shin, D., Salazar-García, D. C., Price, T. D., Borić, D., Kostyleva, E., Veselovskaya, E. V., Usmanova, E. R., Cappellini, E., Petersen, E. B., Kannegaard, E., Radina, F., Yediay, F. E., Duday, H., Gutiérrez-Zugasti, I., Merts, I., Potekhina, I., Shevnina, I., Altinkaya, I., Guilaine, J., Hansen, J., Tortosa, J. E. A., Zilhão, J., Vega, J., Pedersen, K. B., Tunia, K., Zhao, L., Mylnikova, L. N., Larsson, L., Metz, L., Yepiskoposyan, L., Pedersen, L., Sarti, L., Orlando, L., Slimak, L., Klassen, L., Blank, M., González-Morales, M., Silvestrini, M., Vretemark, M., Nesterova, M. S., Rykun, M., Rolfo, M. F., Szmyt, M., Przybyła, M., Calattini, M., Sablin, M., Dobisíková, M., Meldgaard, M., Johansen, M., Berezina, N., Card, N., Saveliev, N. A., Poshekhonova, O., Rickards, O., Lozovskaya, O. V., Gábor, O., Uldum, O. C., Aurino, P., Kosintsev, P., Courtaud, P., Ríos, P., Mortensen, P., Lotz, P., Persson, P., Bangsgaard, P., de Barros Damgaard, P., Vang Petersen, P., Martinez, P. P., Włodarczak, P., Smolyaninov, R. V., Maring, R., Menduiña, R., Badalyan, R., Iversen, R., Turin, R., Vasilyev, S., Wåhlin, S., Borutskaya, S., Skochina, S., Sørensen, S. A., Andersen, S. H., Jørgensen, T., Serikov, Y. B., Molodin, V. I., Smrcka, V., Merts, V., Appadurai, V., Moiseyev, V., Magnusson, Y., Kjær, K. H., Lynnerup, N., Lawson, D. J., Sudmant, P. H., Rasmussen, S., Korneliussen, T. S., Durbin, R., Nielsen, R., Delaneau, O., Werge, T., Racimo, F., Kristiansen, K. & Willerslev, E., 2024, In: Nature. 625, 7994, p. 301-311

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Vittrup Man–The life-history of a genetic foreigner in Neolithic Denmark

Fischer, A., Sjögren, K-G., Jensen, T. Z. T., Jørkov, M. L., Lysdahl, P., Vimala, T., Refoyo-martínez, A., Scorrano, G., Price, T. D., Gröcke, D. R., Gotfredsen, A. B., Sørensen, L., Alexandersen, V., Wåhlin, S., Stenderup, J., Bennike, O., Ingason, A., Iversen, R., Sikora, M., Racimo, F. & 3 others, Willerslev, E., Allentoft, M. E. & Kristiansen, K., 2024, In: PLoS ONE. 19, 2, p. 1-27

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Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters

Louis, M., Korlević, P., Nykänen, M., Archer, F., Berrow, S., Brownlow, A., Lorenzen, E. D., O'Brien, J., Post, K., Racimo, F., Rogan, E., Rosel, P. E., Sinding, M-H. S., van der Es, H., Wales, N., Fontaine, M. C., Gaggiotti, O. E. & Foote, A. D., 2023, In: Nature Communications. 14, 13 p., 4020.

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Dealing with dimensionality: the application of machine learning to multi-omics data

Feldner-Busztin, D., Nisantzis, P. F., Edmunds, S. J., Boza, G., Racimo, F., Gopalakrishnan, S., Limborg, M. T., Lahti, L. & de Polavieja, G. G., 2023, In: Bioinformatics. 39, 2, 8 p., btad021.

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Genome sequencing of 2000 canids by the Dog10K consortium advances the understanding of demography, genome function and architecture

Meadows, J. R. S., Kidd, J. M., Wang, G. D., Parker, H. G., Schall, P. Z., Bianchi, M., Christmas, M. J., Bougiouri, K., Buckley, R. M., Hitte, C., Nguyen, A. K., Wang, C., Jagannathan, V., Niskanen, J. E., Frantz, L. A. F., Arumilli, M., Hundi, S., Lindblad-Toh, K., Ginja, C., Agustina, K. K. & 28 others, André, C., Boyko, A. R., Davis, B. W., Drögemüller, M., Feng, X-Y., Gkagkavouzis, K., Iliopoulos, G., Harris, A. C., Hytönen, M. K., Kalthoff, D. C., Liu, Y-H., Lymberakis, P., Poulakakis, N., Pires, A. E., Racimo, F., Ramos-Almodovar, F., Savolainen, P., Venetsani, S., Tammen, I., Triantafyllidis, A., vonHoldt, B., Wayne, R. K., Larson, G., Nicholas, F. W., Lohi, H., Leeb, T., Zhang, Y-P. & Ostrander, E. A., 2023, In: Genome Biology. 24, 41 p., 187.

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PaleoProPhyler: a reproducible pipeline for phylogenetic inference using ancient proteins

Patramanis, I., Ramos-Madrigal, J., Cappellini, E. & Racimo, F., 2023, In: Peer Community Journal. 3, 12 p., e112.

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Population genomics of the island thrush elucidates one of earth's great archipelagic radiations

Hart Reeve, A., Gower, G., Pujolar, J. M., Smith, B. T., Petersen, B., Olsson, U., Haryoko, T., Koane, B., Maiah, G., Blom, M. P. K., Ericson, P. G. P., Irestedt, M., Racimo, F. & Jønsson, K. A., 2023, In: Evolution Letters. 7, 1, p. 24-36 13 p.

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Fernando Racimo

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Human genetic structure in Northwest France provides new insights into West European historical demography

Population genomics of post-glacial western Eurasia

Vittrup Man–The life-history of a genetic foreigner in Neolithic Denmark

Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters

Dealing with dimensionality: the application of machine learning to multi-omics data

Genome sequencing of 2000 canids by the Dog10K consortium advances the understanding of demography, genome function and architecture

PaleoProPhyler: a reproducible pipeline for phylogenetic inference using ancient proteins

Population genomics of the island thrush elucidates one of earth's great archipelagic radiations