Filipe Jorge Garrett Vieira

Research output

Research output per year 2007 2016 2017 2018 2020 2021 2022 2023

• 6604 Citations
• 57 Journal article
• 3 Letter
• 2 Preprint
• 1 Book chapter
• 1 More
  • 1 Review

Research output per year

Research output per year

Search results

• 2023

  Uncovering neutral and adaptive genomic differentiation among European perch with brackish water and freshwater origin in the western Baltic Sea region

  Skovrind, M., Pacheco, G., Christensen, E. A. F., Gopalakrishnan, S., Fietz, K., Holm-Hansen, T. H., Vieira, F. G., Krag, M. A., Carl, H., Gilbert, M. T. P., Olsen, M. T. & Møller, P. R., 2023, In: Fisheries Research. 268, 11 p., 106846.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  23 Downloads (Pure)
• 2022

  Differences in gene expression despite identical histomorphology in sinonasal intestinal-type adenocarcinoma and metastases from colorectal adenocarcinoma

  Sjöstedt, S., Vieira, F. G., Karnov, K., Agander, T. K., Willemoe, G. L., Rohrberg, K. S., Nielsen, F. C. & von Buchwald, C., 2022, In: APMIS. 130, 9, p. 551-559

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  14 Downloads (Pure)

• Intestinal metaplasia is a precursor lesion for sinonasal intestinal-type adenocarcinoma: genomic investigation of a case proving this hypothesis

  Sjöstedt, S., Schmidt, A. Y., Vieira, F. G., Woller, N. C., Nielsen, F. C. & von Buchwald, C., Jan 2022, In: APMIS. 130, 1, p. 53-56 4 p.

  Research output: Contribution to journal › Letter › Research › peer-review

  Open Access

  File
  2 Citations (Scopus)

  15 Downloads (Pure)

• Origin and expansion of the world’s most widespread pinniped: Range-wide population genomics of the harbour seal (Phoca vitulina)

  Liu, X., Schjøtt, S. R., Granquist, S. M., Rosing-Asvid, A., Dietz, R., Teilmann, J., Galatius, A., Cammen, K., O’Corry-Crowe, G., Harding, K., Härkönen, T., Hall, A., Carroll, E. L., Kobayashi, Y., Hammill, M., Stenson, G., Kirstine Frie, A., Lydersen, C., Kovacs, K. M., Andersen, L. W. & 6 others, Hoffman, J. I., Goodman, S. J., Vieira, F. G., Heller, R., Moltke, I. & Tange Olsen, M., 2022, In: Molecular Ecology. 31, 6, p. 1682-1699

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  6 Citations (Scopus)

  27 Downloads (Pure)

• Palaeoproteomics identifies beaver fur in Danish high-status Viking Age burials - direct evidence of fur trade

  Brandt, L. Ø., Taurozzi, A. J., Mackie, M., Sinding, M. H. S., Vieira, F. G., Schmidt, A. L., Rimstad, C., Collins, M. J. & Mannering, U., 2022, In: PLoS ONE. 17, 7, 14 p., e0270040.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  6 Citations (Scopus)

  28 Downloads (Pure)

• The population genomic legacy of the second plague pandemic

  Gopalakrishnan, S., Ebenesersdóttir, S. S., Lundstrøm, I. K. C., Turner-Walker, G., Moore, K. H. S., Luisi, P., Margaryan, A., Martin, M. D., Ellegaard, M. R., Magnússon, Ó., Sigurðsson, Á., Snorradóttir, S., Magnúsdóttir, D. N., Laffoon, J. E., van Dorp, L., Liu, X., Moltke, I., Ávila-Arcos, M. C., Schraiber, J. G., Rasmussen, S. & 40 others, Juan, D., Gelabert, P., de-Dios, T., Fotakis, A. K., Iraeta-Orbegozo, M., Vågene, Å. J., Denham, S. D., Christophersen, A., Stenøien, H. K., Vieira, F. G., Liu, S., Günther, T., Kivisild, T., Moseng, O. G., Skar, B., Cheung, C., Sandoval-Velasco, M., Wales, N., Schroeder, H., Campos, P. F., Guðmundsdóttir, V. B., Sicheritz-Ponten, T., Petersen, B., Halgunset, J., Gilbert, E., Cavalleri, G. L., Hovig, E., Kockum, I., Olsson, T., Alfredsson, L., Hansen, T. F., Werge, T., Willerslev, E., Balloux, F., Marques-Bonet, T., Lalueza-Fox, C., Nielsen, R., Stefánsson, K., Helgason, A. & Gilbert, M. T. P., 2022, In: Current Biology. 32, 21, p. 4743-4751.e6

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  10 Citations (Scopus)

  27 Downloads (Pure)

• Travel Tales of a Worldwide Weed: Genomic Signatures of Plantago major L. Reveal Distinct Genotypic Groups With Links to Colonial Trade Routes

  Iwanycki Ahlstrand, N., Gopalakrishnan, S., Vieira, F. G., Bieker, V. C., Meudt, H. M., Dunbar-Co, S., Rothfels, C. J., Martinez-Swatson, K. A., Maldonado, C., Hassemer, G., Shipunov, A., Bowers, M. D., Gardner, E., Xu, M., Ghorbani, A., Amano, M., Grace, O. M., Pringle, J. S., Bishop, M., Manzanilla, V. & 18 others, Cotrim, H., Blaney, S., Zubov, D., Choi, H-K., Yesil, Y., Bennett, B., Vimolmangkang, S., El-Seedi, H. R., Staub, P. O., Li, Z., Boldbaatar, D., Hislop, M., Caddy, L. J., Muasya, A. M., Saslis-Lagoudakis, C. H., Gilbert, M. T. P., Zerega, N. J. C. & Rønsted, N., 2022, In: Frontiers in Plant Science. 13, 16 p., 838166.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  4 Citations (Scopus)

  29 Downloads (Pure)

• Viral and Genomic Drivers of Squamous Cell Neoplasms Arising in the Lacrimal Drainage System

  Ramberg, I., Vieira, F. G., Toft, P. B., Buchwald, C. V. & Heegaard, S., 2022, In: Cancers. 14, 10, 2558.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  4 Citations (Scopus)

  14 Downloads (Pure)
• 2021

  A comparison of tools for copy-number variation detection in germline whole exome and whole genome sequencing data

  Gabrielaite, M., Torp, M. H., Rasmussen, M. S., Andreu-Sánchez, S., Vieira, F. G., Pedersen, C. B., Kinalis, S., Madsen, M. B., Kodama, M., Demircan, G. S., Simonyan, A., Yde, C. W., Olsen, L. R., Marvig, R. L., Østrup, O., Rossing, M., Nielsen, F. C., Winther, O. & Bagger, F. O., 2021, In: Cancers. 13, 24, 6283.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  38 Citations (Scopus)

  34 Downloads (Pure)

• A comparison of tools for copy-number variation detection in germline whole exome and whole genome sequencing data

  Gabrielaite, M., Torp, MH., Rasmussen, MS., Andreu-Sánchez, S., Vieira, FG., Pedersen, CB., Kinalis, S., Madsen, MB., Yde, CW., Rønn, O. L., Marvig, RL., Østrup, O., Rossing, C. M., Nielsen, F. C., Winther, O. & Bagger, F. O., 2021, bioRxiv, 29 p.

  Research output: Working paper › Preprint › Research

  Open Access

  File
  20 Downloads (Pure)

• A genomic exploration of the early evolution of extant cats and their sabre-toothed relatives: [version 2; peer review: 2 approved]

  Westbury, M. V., Barnett, R., Sandoval-Velasco, M., Gower, G., Vieira, F. G., de Manuel, M., Hansen, A. J., Yamaguchi, N., Werdelin, L., Marques-Bonet, T., Gilbert, M. T. P. & Lorenzen, E. D., 2021, In: Open Research Europe. 1, 16 p., 25.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  35 Downloads (Pure)

• A genomic exploration of the early evolution of extant cats and their sabre-toothed relatives: [version 1; peer review: 2 approved]

  Westbury, M. V., Barnett, R., Sandoval-Velasco, M., Gower, G., Vieira, F. G., de Manuel, M., Hansen, A. J., Yamaguchi, N., Werdelin, L., Marques-Bonet, T., Gilbert, M. T. P. & Lorenzen, E. D., 2021, In: Open Research Europe. 1, 15 p., 25.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  1 Citation (Scopus)

  14 Downloads (Pure)

• Contrasting genetic signal of recolonization after rainforest fragmentation in African trees with different dispersal abilities

  Piñeiro, R., Hardy, O. J., Tovar, C., Gopalakrishnan, S., Vieira, F. G. & Gilbert, M. T. P., 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 27, 9 p., e2013979118.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access
  7 Citations (Scopus)

• Genomic alterations in human papillomavirus-positive and -negative conjunctival squamous cell carcinomas

  Ramberg, I., Vieira, F. G., Toft, P. B., Von Buchwald, C., Funding, M., Nielsen, F. C. & Heegaard, S., 2021, In: Investigative Ophthalmology and Visual Science. 62, 14, 11.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  4 Citations (Scopus)

  14 Downloads (Pure)

• Germline RET Leu56Met Variant Is Likely Not Causative of Multiple Endocrine Neoplasia Type 2

  Hansen, A. R., Borgwardt, L., Rasmussen, Å. K., Godballe, C., Poulsen, M. M., Vieira, F. G., Mathiesen, J. S. & Rossing, M., 2021, In: Frontiers in Endocrinology. 12, 764512.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  12 Downloads (Pure)

• Historical population declines prompted significant genomic erosion in the northern and southern white rhinoceros (Ceratotherium simum)

  Sánchez-Barreiro, F., Gopalakrishnan, S., Ramos-Madrigal, J., Westbury, M. V., de Manuel, M., Margaryan, A., Ciucani, M. M., Vieira, F. G., Patramanis, Y., Kalthoff, D. C., Timmons, Z., Sicheritz-Pontén, T., Dalén, L., Ryder, O. A., Zhang, G., Marques-Bonet, T., Moodley, Y. & Gilbert, M. T. P., 2021, In: Molecular Ecology. 30, 23, p. 6355-6369 15 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  27 Downloads (Pure)

• Kouprey (Bos sauveli) genomes unveil polytomic origin of wild Asian Bos

  Sinding, M-H. S., Ciucani, M. M., Ramos-Madrigal, J., Carmagnini, A., Rasmussen, J. A., Feng, S., Chen, G., Vieira, F. G., Mattiangeli, V., Ganjoo, R. K., Larson, G., Sicheritz-Pontén, T., Petersen, B., Frantz, L., Gilbert, M. T. P. & Bradley, D. G., 2021, In: iScience. 24, 11, 18 p., 103226.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  7 Citations (Scopus)

  20 Downloads (Pure)

• Major driver mutations are shared between sinonasal intestinal-type adenocarcinoma and the morphologically identical colorectal adenocarcinoma

  Sjöstedt, S., Schmidt, A. Y., Vieira, F. G., Willemoe, G. L., Agander, T. K., Olsen, C., Nielsen, F. C. & von Buchwald, C., Apr 2021, In: Journal of Cancer Research and Clinical Oncology. 147, 4, p. 1019-1027 9 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  15 Citations (Scopus)
• 2020

  Arctic-adapted dogs emerged at the Pleistocene-Holocene transition

  Sinding, M. H. S., Gopalakrishnan, S., Ramos-Madrigal, J., de Manuel, M., Pitulko, V. V., Kuderna, L., Feuerborn, T. R., Frantz, L. A. F., Vieira, F. G., Niemann, J., Samaniego Castruita, J. A., Carøe, C., Andersen-Ranberg, E. U., Jordan, P. D., Pavlova, E. Y., Nikolskiy, P. A., Kasparov, A. K., Ivanova, V. V., Willerslev, E., Skoglund, P. & 15 others, Fredholm, M., Wennerberg, S. E., Heide-Jørgensen, M. P., Dietz, R., Sonne, C., Meldgaard, M., Dalén, L., Larson, G., Petersen, B., Sicheritz-Pontén, T., Bachmann, L., Wiig, Ø., Marques-Bonet, T., Hansen, A. J. & Gilbert, M. T. P., 2020, In: Science (New York, N.Y.). 368, 6498, p. 1495-1499 5 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access
  63 Citations (Scopus)

• Conservation genetics of the critically endangered Siamese rosewood (Dalbergia cochinchinensis): recommendations for management and sustainable use

  Hartvig, I., So, T., Changtragoon, S., Tran, H. T., Bouamanivong, S., Ogden, R., Senn, H., Vieira, F. G., Turner, F., Talbot, R., Theilade, I., Nielsen, L. R. & Kjær, E. D., 2020, In: Conservation Genetics. 21, p. 677-692

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  11 Citations (Scopus)

  32 Downloads (Pure)

• Darwin's Fancy Revised: An Updated Understanding of the Genomic Constitution of Pigeon Breeds

  Pacheco, G., van Grouw, H., Shapiro, M. D., Gilbert, T. & Vieira, F. G., 2020, In: Genome Biology and Evolution. 12, 3, p. 136-150 15 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  10 Citations (Scopus)

  95 Downloads (Pure)

• Genomic Adaptations and Evolutionary History of the Extinct Scimitar-Toothed Cat, Homotherium latidens

  Barnett, R., Westbury, M. V., Sandoval-Velasco, M., Vieira, F. G., Jeon, S., Zazula, G., Martin, M. D., Ho, S. Y. W., Mather, N., Gopalakrishnan, S., Ramos-Madrigal, J., de Manuel, M., Zepeda-Mendoza, M. L., Antunes, A., Baez, A. C., De Cahsan, B., Larson, G., O’Brien, S. J., Eizirik, E., Johnson, W. E. & 11 others, Koepfli, K-P., Wilting, A., Fickel, J., Dalén, L., Lorenzen, E. D., Marques-Bonet, T., Hansen, A. J., Zhang, G., Bhak, J., Yamaguchi, N. & Gilbert, M. T. P., 2020, In: Current Biology. 30, p. 5018-5025

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  36 Citations (Scopus)

  61 Downloads (Pure)

• Recent mitochondrial lineage extinction in the critically endangered Javan rhinoceros

  Margaryan, A., Sinding, M. H. S., Shanlin, L. I. U., Vieira, F. G., Chan, Y. L., Nathan, S. K. S. S., Moodley, Y., Bruford, M. W. & P. Gilbert, M. T., 2020, In: Zoological Journal of the Linnean Society. 190, 1, p. 372-383 12 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  13 Citations (Scopus)

  25 Downloads (Pure)

• The evolutionary history of extinct and living lions

  de Manuel, M., Barnett, R., Sandoval-Velasco, M., Yamaguchi, N., Vieira, F. G., Mendoza, M. L. Z., Liu, S., Martin, M. D., Sinding, M-H. S., Mak, S. S. T., Caroe, C., Liu, S., Guo, C., Zheng, J., Zazula, G., Baryshnikov, G., Eizirik, E., Koepfli, K-P., Johnson, W. E., Antunes, A. & 9 others, Sicheritz-Ponten, T., Gopalakrishnan, S., Larson, G., Yang, H., O'Brien, S. J., Hansen, A. J., Zhang, G., Marques-Bonet, T. & Gilbert, M. T. P., 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 20, p. 10927-10934 8 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  64 Citations (Scopus)

  104 Downloads (Pure)

• Using in silico predicted ancestral genomes to improve the efficiency of paleogenome reconstruction

  Vieira, F. G., Castruita, J. A. S. & Gilbert, M. T. P., 2020, In: Ecology and Evolution. 10, 23, p. 12700-12709

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  3 Citations (Scopus)

  19 Downloads (Pure)
• 2019

  Contrasting dates of rainforest fragmentation in Africa inferred from trees with different dispersal abilities

  Pineiro, R., Hardy, O. J., Tovar, C., Gopalakrishnan, S., Vieira, F. G. & Gilbert, M. T. P., 2019, 19 p. (bioRxiv).

  Research output: Working paper › Preprint › Research

  File
  16 Downloads (Pure)

• ngsLD: evaluating linkage disequilibrium using genotype likelihoods

  Fox, E. A., Wright, A. E., Fumagalli, M. & Vieira, F. G., 1 Oct 2019, In: Bioinformatics (Oxford, England). 35, 19, p. 3855-3856 2 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  78 Citations (Scopus)

  32 Downloads (Pure)

• Parallel adaptation of rabbit populations to myxoma virus

  Alves, J. M., Carneiro, M., Cheng, J. Y., Matos, A. L. D., Rahman, M. M., Loog, L., Campos, P. F., Wales, N., Eriksson, A., Manica, A., Strive, T., Graham, S. C., Afonso, S., Bell, D. J., Belmont, L., Day, J. P., Fuller, S. J., Marchandeau, S., Palmer, W. J., Queney, G. & 8 others, Surridge, A. K., Vieira, F. G., McFadden, G., Nielsen, R., Gilbert, M. T. P., Esteves, P. J., Ferrand, N. & Jiggins, F. M., 2019, In: Science. 363, 6433

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access
  110 Citations (Scopus)
• 2018

  Ancient DNA analysis of Scandinavian medieval drinking horns and the horn of the last aurochs bull

  Bro-Jørgensen, M. H., Carøe, C., Vieira, F. G., Nestor, S., Hallström, A., Gregersen, K. M., Etting, V., Gilbert, M. T. P. & Sinding, M. H. S., 1 Nov 2018, In: Journal of Archaeological Science. 99, p. 47-54 8 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  File
  10 Citations (Scopus)

  13 Downloads (Pure)

• BpWrapper: BioPerl-based sequence and tree utilities for rapid prototyping of bioinformatics pipelines

  Hernandez, Y., Bernstein, R., Pagan, P., Vargas, L., McCaig, W., Ramrattan, G., Akther, S., Larracuente, A., Di, L., Vieira, F. J. G. & Qiu, W-G., 2 Mar 2018, In: B M C Bioinformatics. 19, 7 p., 76.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  9 Citations (Scopus)

  139 Downloads (Pure)

• Identification of transcription factor genes involved in anthocyanin biosynthesis in carrot (Daucus carota L.) using RNA-Seq

  Kodama, M., Brinch-pedersen, H., Sharma, S., Holme, I. B., Joernsgaard, B., Dzhanfezova, T., Amby, D. B., Vieira, F. G., Liu, S. & Gilbert, M. T. P., 2018, In: BMC Genomics. 19, 13 p., 811.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  36 Citations (Scopus)

  198 Downloads (Pure)

• Interspecific Gene Flow Shaped the Evolution of the Genus Canis

  Gopalakrishnan, S., Sinding, M. H. S., Ramos-Madrigal, J., Niemann, J., Samaniego Castruita, J. A., Vieira, F. G., Carøe, C., Montero, M. D. M., Kuderna, L., Serres, A., González-Basallote, V. M., Liu, Y. H., Wang, G. D., Marques-Bonet, T., Mirarab, S., Fernandes, C., Gaubert, P., Koepfli, K. P., Budd, J., Rueness, E. K. & 7 others, Heide-Jørgensen, M. P., Petersen, B., Sicheritz-Ponten, T., Bachmann, L., Wiig, Ø., Hansen, A. J. & Gilbert, M. T. P., 2018, In: Current Biology. 28, 21, p. 3441-3449

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  98 Citations (Scopus)

  256 Downloads (Pure)

• Male-biased gene expression resolves sexual conflict through the evolution of sex-specific genetic architecture

  Wright, A. E., Fumagalli, M., Cooney, C. R., Bloch, N. I., Vieira, F. G., Buechel, S. D., Kolm, N. & Mank, J. E., Apr 2018, In: Evolution Letters. 2, 2, p. 52-61 10 p.

  Research output: Contribution to journal › Letter › Research › peer-review

  Open Access

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  55 Citations (Scopus)

  90 Downloads (Pure)

• No longer locally extinct? Tracing the origins of a lion (Panthera leo) living in Gabon

  Barnett, R., Sinding, M-H. S., Vieira, F. J. G., Mendoza, M. L. Z., Bonnet, M., Araldi, A., Kienast, I., Zambarda, A., Yamaguchi, N., Henschel, P. & Gilbert, T., 2018, In: Conservation Genetics. 19, 3, p. 611-618 8 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  12 Citations (Scopus)

  164 Downloads (Pure)

• Population genomics of grey wolves and wolf-like canids in North America

  Sinding, M-H. S., Gopalakrishan, S., Vieira, F. G., Samaniego Castruita, J. A., Raundrup, K., Heide-Jørgensen, M. P., Meldgaard, M., Petersen, B., Sicheritz-Ponten, T., Mikkelsen, J. B., Marquard-Petersen, U., Dietz, R., Sonne, C., Dalén, L., Bachmann, L., Wiig, Ø., Hansen, A. J. & Gilbert, M. T. P., 2018, In: PLOS Genetics. 14, 11, 23 p., e1007745.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  46 Citations (Scopus)

  172 Downloads (Pure)
• 2017

  Asian wild rice is a hybrid swarm with extensive gene flow and feralization from domesticated rice

  Wang, H., Garrett Vieira, F. J., Crawford, J. E., Chu, C. & Nielsen, R., Jun 2017, In: Genome Research. 27, 6, p. 1029-1038 10 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  84 Citations (Scopus)

  293 Downloads (Pure)

• Characterizing restriction enzyme-associated loci in historic ragweed (Ambrosia artemisiifolia) voucher specimens using custom-designed RNA probes

  Sanchez Barreiro, F., Garrett Vieira, F. J., Martin, M. D., Haile, J. S., Gilbert, T. & Wales, N., 2017, In: Molecular Ecology Resources. 17, 2, p. 209-220 12 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  16 Citations (Scopus)

• Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing

  Mak, S., Gopalakrishnan, S., Carøe, C., Geng, C., Liu, S., Sinding, M. H. S., Kuderna, L. F. K., Zhang, W., Fu, S., Garrett Vieira, F. J., Germonpré, M., Bocherens, H., Fedorov, S., Petersen, B., Sicheritz-Pontén, T., Marques-Bonet, T., Zhang, G., Jiang, H. & Gilbert, T., Aug 2017, In: GigaScience. 6, 8, p. 1–13 13 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  116 Citations (Scopus)

  520 Downloads (Pure)

• Genomic and proteomic identification of Late Holocene remains: setting baselines for Black Sea odontocetes

  Biard, V., Gol'din, P., Gladilina, E., Vishnyakova, K., McGrath, K., Garrett Vieira, F. J., Wales, N., Fontaine, M. C., Speller, C. & Olsen, M. T., Oct 2017, In: Journal of Archaeological Science: Reports. 15, p. 262-271 10 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  File
  10 Citations (Scopus)

  8 Downloads (Pure)

• Unmatched DNA preservation prove arctic hare and sheep wool in Norse Greenlandic textile from “The Farm Beneath the Sand”

  Sinding, M. H. S., Vieira, F. G. & Smith, M. H., 1 Aug 2017, In: Journal of Archaeological Science: Reports. 14, p. 603-608 6 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  6 Citations (Scopus)
• 2016

  Estimating IBD tracts from low coverage NGS data

  Garrett Vieira, F. J., Albrechtsen, A. & Nielsen, R., 2016, In: Bioinformatics. 32, 14, p. 2096-2102 7 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  32 Citations (Scopus)

• Genome-culture coevolution promotes rapid divergence of killer whale ecotypes

  Foote, A. D., Vijay, N., Avila Arcos, M. D. C., Baird, R. W., Durban, J. W., Fumagalli, M., Gibbs, R. A., Hanson, M. B., Korneliussen, T. S., Martin, M. D., Robertson, K. M., Sousa, V. C., Garrett Vieira, F. J., Vinař, T., Wade, P., Worley, K. C., Excoffier, L., Morin, P. A., Gilbert, T. & Wolf, J. B. W., May 2016, In: Nature Communications. 7, 12 p., 11693.

  Research output: Contribution to journal › Journal article › Research › peer-review

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• Genomic characterization of a South American Phytophthora hybrid mandates reassessment of the geographic origins of Phytophthora infestans

  Martin, M. D., Garrett Vieira, F. J., Ho, S. Y. W., Wales, N., Schubert, M., Seguin-Orlando, A., Ristaino, J. B. & Gilbert, M. T. P., 2016, In: Molecular Biology and Evolution. 33, 2, p. 478-491 14 p.

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• Genomic insights into the Ixodes scapularis tick vector of Lyme disease

  Gulia-Nuss, M., Nuss, A. B., Meyer, J. M., Sonenshine, D. E., Roe, R. M., Waterhouse, R. M., Sattelle, D. B., de la Fuente, J., Ribeiro, J. M., Megy, K., Thimmapuram, J., Miller, J. R., Walenz, B. P., Koren, S., Hostetler, J. B., Thiagarajan, M., Joardar, V. S., Hannick, L. I., Bidwell, S., Hammond, M. P. & 73 others, Young, S., Zeng, Q., Abrudan, J. L., Almeida, F. C., Ayllón, N., Bhide, K., Bissinger, B. W., Bonzon-Kulichenko, E., Buckingham, S. D., Caffrey, D. R., Caimano, M. J., Croset, V., Driscoll, T., Gilbert, D., Gillespie, J. J., Giraldo-Calderón, G. I., Grabowski, J. M., Jiang, D., Khalil, S. M. S., Kim, D., Kocan, K. M., Koči, J., Kuhn, R. J., Kurtti, T. J., Lees, K., Lang, E. G., Kennedy, R. C., Kwon, H., Perera, R., Qi, Y., Radolf, J. D., Sakamoto, J. M., Sánchez-Gracia, A., Severo, M. S., Silverman, N., Šimo, L., Tojo, M., Tornador, C., Van Zee, J. P., Vázquez, J., Garrett Vieira, F. J., Villar, M., Wespiser, A. R., Yang, Y., Zhu, J., Arensburger, P., Pietrantonio, P. V., Barker, S. C., Shao, R., Zdobnov, E. M., Hauser, F., Grimmelikhuijzen, C. C., Park, Y., Rozas, J., Benton, R., Pedra, J. H. F., Nelson, D. R., Unger, M. F., Tubio, J. M. C., Tu, Z., Robertson, H. M., Shumway, M., Sutton, G., Wortman, J. R., Lawson, D., Wikel, S. K., Nene, V. M., Fraser, C. M., Collins, F. H., Birren, B., Nelson, K. E., Caler, E. & Hill, C. A., 2016, In: Nature Communications. 7, 13 p., 10507.

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• Genomic population structure of freshwater-resident and anadromous ide (Leuciscus idus) in north-western Europe

  Skovrind, M., Olsen, M. T., Garrett Vieira, F. J., Antunes Pacheco, G., Carl, H., Gilbert, T. & Møller, P. R., 2016, In: Ecology and Evolution. 6, 4, p. 1064-1074 11 p.

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• Improving the estimation of genetic distances from Next-Generation Sequencing data

  Garrett Vieira, F. J., Lassalle, F., Korneliussen, T. S. & Fumagalli, M., 2016, In: Biological Journal of the Linnean Society. 117, 1, p. 139-149 11 p.

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• The power of inbreeding: NGS-based GWAS of rice reveals convergent evolution during rice domestication

  Wang, H., Xu, X., Garrett Vieira, F. J., Xiao, Y., Li, Z., Wang, J., Nielsen, R. & Chu, C., 6 Jul 2016, In: Molecular Plant. 9, 7, p. 975-985 11 p.

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  90 Citations (Scopus)
• 2015

  Evolutionary genomics and conservation of the endangered Przewalski's horse

  Der Sarkissian, C., Ermini, L., Schubert, M., Yang, M. A., Sanz, P. L., Fumagalli, M., Jónsson, H., Bar-Gal, G. K., Albrechtsen, A., Garrett Vieira, F. J., Petersen, B., Ginolhac, A., Seguin-Orlando, A., Magnussen, K., Fages, A. A., Gamba, C., Lorente-Galdos, B., Polani, S., Steiner, C., Neuditschko, M. & 17 others, Jagannathan, V., Feh, C., Greenblatt, C. L., Ludwig, A., Abramson, N. I., Zimmermann, W., Schafberg, R., Tikhonov, A., Sicheritz-Ponten, T., Willerslev, E., Marques-Bonet, T., Ryder, O. A., McCue, M., Rieder, S., Leeb, T., Slatkin, M. & Orlando, L. A. A., 2015, In: Current Biology. 25, 19, p. 2577-2583 7 p.

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  140 Citations (Scopus)

• The origin and evolution of maize in the Southwestern United States: [+ erratum]

  Rodrigues da Fonseca, R. A., Smith, B. D., Wales, N., Cappellini, E., Skoglund, P., Fumagalli, M., Samaniego Castruita, J. A., Carøe, C., Avila Arcos, M. D. C., Hufnagel, D. E., Korneliussen, T. S., Garrett Vieira, F. J., Jakobsson, M., Arriaza, B., Willerslev, E., Nielsen, R., Hufford, M. B., Albrechtsen, A., Ross-Ibarra, J. & Gilbert, M. T. P., 2015, In: Nature Plants. 1, 5 p., 14003.

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  132 Citations (Scopus)
• 2014

  Mycobacterial phylogenomics: an enhanced method for gene turnover analysis reveals uneven levels of gene gain and loss among species and gene families

  Librado, P., Garrett Vieira, F. J., Sánchez-Gracia, A., Kolokotronis, S. O. & Rozas, J., Jun 2014, In: Genome Biology and Evolution. 6, 6, p. 1454-1465 12 p.

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  14 Citations (Scopus)