Finn Kvist Vogensen

Search results

• 2024

  Draft genome sequences of 53 Lactococcus and Leuconostoc strains isolated from two undefined DL-starter cultures

  Li, W., Soto-Serrano, A., Panah, F. M., Arik, G., Deptula, P., Lucena, D., Vogensen, F. K. & Krych, L., 2024, In: Microbiology resource announcements. 13, 6, 7 p., e00228-24.

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• 2023

  CRISPR-Cas provides limited phage immunity to a prevalent gut bacterium in gnotobiotic mice

  Rasmussen, T. S., Koefoed, A. K., Deng, L., Muhammed, M. K., Rousseau, G. M., Kot, W., Sprotte, S., Neve, H., Franz, C. M. A. P., Hansen, A. K., Vogensen, F. K., Moineau, S. & Nielsen, D. S., 2023, In: ISME Journal. 17, p. 432–442

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• 2022

  Host genetic requirements for DNA release of lactococcal phage TP901-1

  Ruiz-Cruz, S., Erazo Garzon, A., Kelleher, P., Bottacini, F., Breum, S. Ø., Neve, H., Heller, K. J., Vogensen, F. K., Palussière, S., Courtin, P., Chapot-Chartier, M-P., Vinogradov, E., Sadovskaya, I., Mahony, J. & van Sinderen, D., 2022, In: Microbial Biotechnology. 15, 12, p. 2875-2889 15 p.

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  6 Citations (Scopus)

  25 Downloads (Pure)

• Morphological and Genetic Characterization of Eggerthella lenta Bacteriophage PMBT5

  Sprotte, S., Rasmussen, T. S., Cho, G-S., Brinks, E., Lametsch, R., Neve, H., Vogensen, F. K., Nielsen, D. S. & Franz, C. M. A. P., 2022, In: Viruses. 14, 8, 1598.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  3 Citations (Scopus)

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• UV tolerance of Lactococcus lactis 936-type phages: Impact of wavelength, matrix, and pH

  Vitzilaiou, E., Liang, Y., Castro-Mejía, J. L., Franz, C. M. A. P., Neve, H., Vogensen, F. K. & Knøchel, S., 2022, In: International Journal of Food Microbiology. 378, 11 p., 109824.

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• 2021

  Identification of Potential Citrate Metabolism Pathways in Carnobacterium maltaromaticum

  Li, H., Ramia, N. E., Borges, F., Revol-Junelles, A-M., Vogensen, F. K. & Leisner, J. J., 2021, In: Microorganisms. 9, 10, 2169.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  6 Citations (Scopus)

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• Inter-vendor variance of enteric eukaryotic DNA viruses in specific pathogen free C57BL/6N mice

  Rasmussen, T. S., Jakobsen, R. R., Castro-Mejía, J. L., Kot, W., Thomsen, A. R., Vogensen, F. K., Nielsen, D. S. & Hansen, A. K., 2021, In: Research in Veterinary Science. 136, p. 1-5 5 p.

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  7 Citations (Scopus)

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• Sporofaciens musculi gen. nov., sp. nov., a novel bacterium isolated from the caecum of an obese mouse

  Rasmussen, T. S., Streidl, T., Hitch, T. C. A., Wortmann, E., Deptula, P., Kofoed, M. V. W., Riedel, T., Neumann-Schaal, M., Hansen, M., Nielsen, D. S., Clavel, T. & Vogensen, F. K., 2021, In: International Journal of Systematic and Evolutionary Microbiology. 71, 3, 13 p., 004673.

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  7 Citations (Scopus)

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• 2020

  Bacteriophage-mediated manipulation of the gut microbiome - promises and presents limitations

  Rasmussen, T. S., Koefoed, A. K., Jakobsen, R. R., Deng, L., Castro-Mejía, J. L., Brunse, A., Neve, H., Vogensen, F. K. & Nielsen, D. S., 2020, In: FEMS Microbiology Reviews. 44, 4, p. 507-521 15 p.

  Research output: Contribution to journal › Review › Research › peer-review
  68 Citations (Scopus)

• Faecal virome transplantation decreases symptoms of type 2 diabetes and obesity in a murine model

  Rasmussen, T. S., Mentzel, C. M. J., Kot, W., Castro-Mejiá, J. L., Zuffa, S., Swann, J. R., Hansen, L. H., Vogensen, F. K., Hansen, A. K. & Nielsen, D. S., 2020, In: Gut. 69, 12, p. 2122-2130 9 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  148 Citations (Scopus)
• 2019

  A comparative genomics approach for identifying host-range determinants in Streptococcus thermophilus bacteriophages

  Szymczak, P., Rau, M. H., Monteiro, J. M., Pinho, M. G., Filipe, S. R., Vogensen, F. K., Zeidan, A. A. & Janzen, T., 2019, In: Scientific Reports. 9, 14 p., 7991.

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  25 Citations (Scopus)

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• Isolation and characterization of bacteriophages active against methicillin-resistant Staphylococcus pseudintermedius

  Moodley, A., Kot, W., Nälgård, S., Jakociune, D., Neve, H., Hansen, L. H., Guardabassi, L. & Vogensen, F. K., 2019, In: Research in Veterinary Science. 122, p. 81-85 5 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  27 Citations (Scopus)

• Mouse vendor influence on the bacterial and viral gut composition exceeds the effect of diet

  Rasmussen, T. S., de Vries, L., Kot, W., Hansen, L. H., Castro-Mejía, J. L., Vogensen, F. K., Hansen, A. K. & Nielsen, D. S., 2019, In: Viruses. 11, 5, 15 p., 435.

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  54 Citations (Scopus)

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• Novel isolates of Streptococcus thermophilus bacteriophages from group 5093 identified with an improved multiplex PCR typing method

  Szymczak, P., Vogensen, F. K. & Janzen, T., 2019, In: International Dairy Journal. 91, p. 18-24 7 p.

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  2 Citations (Scopus)

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• 2018

  Cell Wall Glycans Mediate Recognition of the Dairy Bacterium Streptococcus thermophilus by Bacteriophages

  Szymczak, P., Filipe, S. R., Covas, G., Vogensen, F. K., Neves, A. R. & Janzen, T., 1 Dec 2018, In: Applied and Environmental Microbiology. 84, 23, 15 p., e01847-18.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  29 Citations (Scopus)

• Extraction and purification of viruses from fecal samples for metagenome and morphology analyses

  Castro-Mejía, J. L., Deng, L., Vogensen, F. K., Reyes, A. & Nielsen, D. S., 2018, The Human Virome: Methods and Protocols. Moya, A. & Brocal, V. P. (eds.). Humana Press, p. 49-57 9 p. (Methods in Molecular Biology, Vol. 1838).

  Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
  6 Citations (Scopus)

• Gut microbiota recovery and immune response in ampicillin-treated mice

  Castro Mejia, J. L., Jakesevic, M., Fabricius, N. F., Krych, L., Nielsen, D. S., Kot, W., Bendtsen, K. M. B., Vogensen, F. K., Hansen, C. H. F. & Hansen, A. K., 2018, In: Research in Veterinary Science. 118, p. 357-364 8 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  9 Citations (Scopus)

• Have you tried spermine? A rapid and cost-effective method to eliminate dextran sodium sulfate inhibition of PCR and RT-PCR

  Krych, L., Kot, W., Bendtsen, K. M. B., Hansen, A. K., Vogensen, F. K. & Nielsen, D. S., 2018, In: Journal of Microbiological Methods. 144, p. 1-7 7 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  69 Citations (Scopus)

• Investigation of the bacteriophage community in induced lysates of undefined mesophilic mixed-strain DL-cultures using classical and metagenomic approaches

  Muhammed, M. K., Olsen, M. L., Kot, W. P., Neve, H., Castro Mejia, J. L., Janzen, T., Hansen, L. H., Nielsen, D. S., Sørensen, S. J., Heller, K. J. & Vogensen, F. K., 2018, In: International Journal of Food Microbiology. 272, p. 61-72 12 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  2 Citations (Scopus)
• 2017

  A high-throughput qPCR system for simultaneous quantitative detection of dairy Lactococcus lactis and Leuconostoc bacteriophages

  Muhammed, M. K., Krych, L., Nielsen, D. S. & Vogensen, F. K., 2017, In: PLOS ONE. 12, 3, 12 p., e0174223.

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  18 Citations (Scopus)

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• Genomic Characterization of Dairy Associated Leuconostoc Species and Diversity of Leuconostocs in Undefined Mixed Mesophilic Starter Cultures

  Frantzen, C. A., Kot, W., Pedersen, T. B., Ardö, Y. M., Broadbent, J. R., Neve, H., Hansen, L. H., Dal Bello, F., Ostlie, H. M., Kleppen, H. P., Vogensen, F. K. & Holo, H., 2017, In: Frontiers in Microbiology. 8, 14 p.

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  54 Citations (Scopus)

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• Immunological effects of reduced mucosal integrity in the early life of BALB/c mice

  Bendtsen, K. M. B., Hansen, C. H. F., Krych, L., Skovgaard, K., Kot, W. P., Vogensen, F. K. & Hansen, A. K., 2017, In: PLOS ONE. 12, 5, 20 p., 0176662.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  13 Citations (Scopus)

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• Metagenomic analysis of dairy bacteriophages: extraction method and pilot study on whey samples derived from using undefined and defined mesophilic starter cultures

  Muhammed, M. K., Kot, W. P., Neve, H., Mahony, J., Castro Mejia, J. L., Krych, L., Hansen, L. H., Nielsen, D. S., Sørensen, S. J., Heller, K. J., van Sinderen, D. & Vogensen, F. K., 2017, In: Applied and Environmental Microbiology. 83, 19, 15 p., e00888-17.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  24 Citations (Scopus)

• Novel Variants of Streptococcus thermophilus Bacteriophages Are Indicative of Genetic Recombination among Phages from Different Bacterial Species

  Szymczak, P., Janzen, T., Neves, A. R., Kot, W., Hansen, L. H., Lametsch, R., Neve, H., Franz, C. M. A. P. & Vogensen, F. K., 2017, In: Applied and Environmental Microbiology. 85, 5, 16 p., e02748-16.

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  29 Citations (Scopus)

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• Traditional Fermented Dairy Products of Ethiopia: A Review

  Berhe, T., Vogensen, F. K., Ipsen, R., Seifu, E., Kurtu, M. Y. & Hansen, E. B., 2017, In: East African Journal of Sciences. 11, 2, p. 73-80 8 p.

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• 2016

  Clear plaque mutants of lactococcal phage TP901-1

  Kot, W., Kilstrup, M., Vogensen, F. K. & Hammer, K., 2016, In: P L o S One. 11, 6, 10 p., e0155233.

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  2 Citations (Scopus)

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• Effect of heterofermentative lactic acid bacteria of DL-starters in initial ripening of semi-hard cheese

  Pedersen, T. B., Vogensen, F. K. & Ardö, Y. M., 2016, In: International Dairy Journal. 57, p. 72-79 8 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  23 Citations (Scopus)

• Real-time metabolomic analysis of lactic acid bacteria as monitored by in vitro NMR and chemometrics

  Ebrahimi, P., Larsen, F. H., Jensen, H. M., Vogensen, F. K. & Engelsen, S. B., 2016, In: Metabolomics. 12, 4, 17 p., 77.

  Research output: Contribution to journal › Journal article › Research › peer-review
  24 Citations (Scopus)

• Taxonomy of prokaryotic viruses: update from the ICTV bacterial and archaeal viruses subcommittee

  Krupovic, M., Dutilh, B. E., Adriaenssens, E. M., Wittmann, J., Vogensen, F. K., Sullivan, M. B., Rumnieks, J., Prangishvili, D., Lavigne, R., Kropinski, A. M., Klumpp, J., Gillis, A., Enault, F., Edwards, R. A., Duffy, S., Clokie, M. R. C., Barylski, J., Ackermann, H. W. & Kuhn, J. H., 2016, In: Archives of Virology. 161, 4, p. 1095-1099 5 p.

  Research output: Contribution to journal › Comment/debate › Research › peer-review
  69 Citations (Scopus)

• Transcriptome analysis of Lactococcus lactis subsp. lactis during milk acidification as affected by dissolved oxygen and the redox potential

  Larsen, N., Moslehi Jenabian, S., Werner, B. B., Lund Jensen, M., Garrigues, C., Vogensen, F. K. & Jespersen, L., 2016, In: International Journal of Food Microbiology. 226, p. 5-12 8 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  18 Citations (Scopus)
• 2015

  Classification of Lactococcus lactis cell envelope proteinase based on gene sequencing, peptides formed after hydrolysis of milk, and computer modeling

  Børsting, M. W., Qvist, K. B., Brockmann, E., Vindeløv, J., Pedersen, T. L., Vogensen, F. K. & Ardö, Y. M., 2015, In: Journal of Dairy Science. 98, 1, p. 68-77 10 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  13 Citations (Scopus)

• Contribution of volatiles to the antifungal effect of Lactobacillus paracasei in defined medium and yogurt

  Aunsbjerg, S. D., Honoré, A. H., Marcussen, J., Ebrahimi, P., Vogensen, F. K., Benfeldt, C., Skov, T. & Knøchel, S., 2015, In: International Journal of Food Microbiology. 194, p. 46-53 8 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  66 Citations (Scopus)

• Development of a chemically defined medium for studying foodborne bacterial-fungal interactions

  Aunsbjerg, S. D., Honoré, A. H., Vogensen, F. K. & Knøchel, S., 2015, In: International Dairy Journal. 45, p. 48-55 8 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  6 Citations (Scopus)

• Effect of dissolved oxygen on redox potential and milk acidification by lactic acid bacteria isolated from a DL-starter culture

  Larsen, N., Werner, B. B., Vogensen, F. K. & Jespersen, L., 2015, In: Journal of Dairy Science. 98, 3, p. 1640-1651 12 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  22 Citations (Scopus)

• Influence of proteolytic Lactococcus lactis subsp. cremoris on ripening of reduced-fat Cheddar cheese made with camel chymosin

  Børsting, M. W., Stallknecht, M. K., Vogensen, F. K. & Ardö, Y. M., 2015, In: International Dairy Journal. 41, p. 38-45 8 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  7 Citations (Scopus)

• Optimizing protocols for extraction of bacteriophages prior to metagenomic analyses of phage communities in the human gut

  Castro Mejia, J. L., Muhammed, M. K., Kot, W. P., Neve, H., Franz, C. M. A. P., Hansen, L. H., Vogensen, F. K. & Nielsen, D. S., 2015, In: Microbiome. 3, 14 p., 64.

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  106 Citations (Scopus)

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• Phytase-active lactic acid bacteria from sourdoughs: isolation and identification

  Nuobariene, L., Cizeikiene, D., Gradzeviciute, E., Hansen, Å. S., Rasmussen, S. K., Juodeikiene, G. & Vogensen, F. K., 2015, In: Lebensmittel - Wissenschaft und Technologie. 63, 1, p. 766-772 7 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  62 Citations (Scopus)

• Role of volatiles in antifungal activity of a Lactobacillus paracasei against Penicillium strains

  Aunsbjerg, S. D., Honoré, A. H., Ebrahimi, P., Vogensen, F. K., Skov, T. & Knøchel, S., 2015. 1 p.

  Research output: Contribution to conference › Conference abstract for conference › Research

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• 2014

  Bacteriophages of Leuconostoc, Oenococcus, and Weissella

  Kot, W., Neve, H., Heller, K. J. & Vogensen, F. K., 2014, In: Frontiers in Microbiology. 5, p. 1-9 9 p., 186.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  53 Citations (Scopus)

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• Characterization of the gut microbiota in leptin deficient obese mice: correlation to inflammatory and diabetic parameters

  Ellekilde, M., Krych, L., Hansen, C. H. F., Hufeldt, M. R., Dahl, K., Hansen, L. H., Sørensen, S. J., Vogensen, F. K., Nielsen, D. S. & Hansen, A. K., 2014, In: Research in Veterinary Science. 96, 2, p. 241-250 10 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  77 Citations (Scopus)

• Complete genome sequences of four novel Lactococcus lactis phages distantly related to the Rare 1706 Phage Species

  Kot, W. P., Neve, H., Vogensen, F. K., Heller, K. J., Sørensen, S. J. & Hansen, L. H., 2014, In: Genome Announcements. 2, 4, 2 p., e00265-14.

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  7 Citations (Scopus)

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• DPS - a rapid method for genome sequencing of DNA-containing bacteriophages directly from a single plaque

  Kot, W. P., Vogensen, F. K., Sørensen, S. J. & Hansen, L. H., 2014, In: Journal of Virological Methods. 196, p. 152-156 5 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  33 Citations (Scopus)

• Genome sequence of Leuconostoc mesenteroides subsp. cremoris strain T26, isolated from mesophilic undefined cheese starter

  Pedersen, T. B., Kot, W. P., Hansen, L. H., Sørensen, S. J., Broadbent, J. R., Vogensen, F. K. & Ardö, Y. M., 2014, In: Genome Announcements. 2, 3, 1 p.

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  7 Citations (Scopus)

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• Genome sequences of two Leuconostoc pseudomesenteroides strains isolated from Danish dairy starter cultures

  Pedersen, T. B., Kot, W. P., Hansen, L. H., Sørensen, S. J., Broadbent, J. R., Vogensen, F. K. & Ardö, Y. M., 2014, In: Genome Announcements. 2, 3, p. 2 e00484-14.

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  5 Citations (Scopus)

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• Sequence and comparative analysis of Leuconostoc dairy bacteriophages

  Kot, W. P., Hansen, L. H., Neve, H., Hammer, K., Jacobsen, S., Pedersen, P. D., Sørensen, S. J., Heller, K. J. & Vogensen, F. K., 2014, In: International Journal of Food Microbiology. 176, p. 29-37 9 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  21 Citations (Scopus)

• Transfer of gut microbiota from lean and obese mice to antibiotic-treated mice

  Ellekilde, M., Selfjord, E. M., Larsen, C. S., Jakesevic, M., Rune, I., Christensen, B. T., Vogensen, F. K., Nielsen, D. S., Bahl, M. I., Licht, T. R., Hansen, A. K. & Hansen, C. H. F., 2014, In: Scientific Reports. 4, 8 p., 5922.

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  123 Citations (Scopus)

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• 2013

  2-heptyl-formononetin increases cholesterol and induces hepatic steatosis in mice

  Andersen, C., Schjoldager, J. G., Tortzen, C., Vegge, A., Hufeldt, M. R., Skaanild, M. T., Vogensen, F. K., Kristiansen, K., Hansen, A. J. K. & Nielsen, J., 2013, In: Journal of Biomedicine and Biotechnology. 2013, 13 p., 926942.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  9 Citations (Scopus)

  4870 Downloads (Pure)

• Classification of lytic bacteriophages attacking dairy Leuconostoc starter strains

  Ali, Y., Kot, W. P., Atamer, Z., Hinrichs, J., Vogensen, F. K., Heller, K. J. & Neve, H., 2013, In: Applied and Environmental Microbiology. 79, 12, p. 3628-3636 9 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  28 Citations (Scopus)

• Development and validation of a chemically defined medium used for studying foodborne bacterial-fungal interactions

  Nielsen, S. D. A., Honoré, A. H., Vogensen, F. K. & Knøchel, S., 2013. 1 p.

  Research output: Contribution to conference › Conference abstract for conference › Research

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• Effect of Lactobacillus salivarius Ls-33 on fecal microbiota in obese adolescents

  Larsen, N., Vogensen, F. K., Gøbel, R. J., Michaelsen, K. F., Forssten, S. D., Lahtinen, S. J. & Jakobsen, M., 2013, In: Clinical Nutrition. 32, 6, p. 935-940 6 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  87 Citations (Scopus)