Research output per year
Research output per year
Research output
- 1 - 50 out of 186 results
Search results
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2024
Draft genome sequences of 53 Lactococcus and Leuconostoc strains isolated from two undefined DL-starter cultures
Li, W., Soto-Serrano, A., Panah, F. M., Arik, G., Deptula, P., Lucena, D., Vogensen, F. K. & Krych, L., 2024, In: Microbiology resource announcements. 13, 6, 7 p., e00228-24.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile8 Downloads (Pure) -
2023
CRISPR-Cas provides limited phage immunity to a prevalent gut bacterium in gnotobiotic mice
Rasmussen, T. S., Koefoed, A. K., Deng, L., Muhammed, M. K., Rousseau, G. M., Kot, W., Sprotte, S., Neve, H., Franz, C. M. A. P., Hansen, A. K., Vogensen, F. K., Moineau, S. & Nielsen, D. S., 2023, In: ISME Journal. 17, p. 432–442Research output: Contribution to journal › Journal article › Research › peer-review
File47 Downloads (Pure) -
2022
Host genetic requirements for DNA release of lactococcal phage TP901-1
Ruiz-Cruz, S., Erazo Garzon, A., Kelleher, P., Bottacini, F., Breum, S. Ø., Neve, H., Heller, K. J., Vogensen, F. K., Palussière, S., Courtin, P., Chapot-Chartier, M-P., Vinogradov, E., Sadovskaya, I., Mahony, J. & van Sinderen, D., 2022, In: Microbial Biotechnology. 15, 12, p. 2875-2889 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile6 Citations (Scopus)25 Downloads (Pure) -
Morphological and Genetic Characterization of Eggerthella lenta Bacteriophage PMBT5
Sprotte, S., Rasmussen, T. S., Cho, G-S., Brinks, E., Lametsch, R., Neve, H., Vogensen, F. K., Nielsen, D. S. & Franz, C. M. A. P., 2022, In: Viruses. 14, 8, 1598.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile3 Citations (Scopus)20 Downloads (Pure) -
UV tolerance of Lactococcus lactis 936-type phages: Impact of wavelength, matrix, and pH
Vitzilaiou, E., Liang, Y., Castro-Mejía, J. L., Franz, C. M. A. P., Neve, H., Vogensen, F. K. & Knøchel, S., 2022, In: International Journal of Food Microbiology. 378, 11 p., 109824.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile6 Citations (Scopus)20 Downloads (Pure) -
2021
Identification of Potential Citrate Metabolism Pathways in Carnobacterium maltaromaticum
Li, H., Ramia, N. E., Borges, F., Revol-Junelles, A-M., Vogensen, F. K. & Leisner, J. J., 2021, In: Microorganisms. 9, 10, 2169.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile6 Citations (Scopus)17 Downloads (Pure) -
Inter-vendor variance of enteric eukaryotic DNA viruses in specific pathogen free C57BL/6N mice
Rasmussen, T. S., Jakobsen, R. R., Castro-Mejía, J. L., Kot, W., Thomsen, A. R., Vogensen, F. K., Nielsen, D. S. & Hansen, A. K., 2021, In: Research in Veterinary Science. 136, p. 1-5 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile7 Citations (Scopus)26 Downloads (Pure) -
Sporofaciens musculi gen. nov., sp. nov., a novel bacterium isolated from the caecum of an obese mouse
Rasmussen, T. S., Streidl, T., Hitch, T. C. A., Wortmann, E., Deptula, P., Kofoed, M. V. W., Riedel, T., Neumann-Schaal, M., Hansen, M., Nielsen, D. S., Clavel, T. & Vogensen, F. K., 2021, In: International Journal of Systematic and Evolutionary Microbiology. 71, 3, 13 p., 004673.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile7 Citations (Scopus)43 Downloads (Pure) -
2020
Bacteriophage-mediated manipulation of the gut microbiome - promises and presents limitations
Rasmussen, T. S., Koefoed, A. K., Jakobsen, R. R., Deng, L., Castro-Mejía, J. L., Brunse, A., Neve, H., Vogensen, F. K. & Nielsen, D. S., 2020, In: FEMS Microbiology Reviews. 44, 4, p. 507-521 15 p.Research output: Contribution to journal › Review › Research › peer-review
68 Citations (Scopus) -
Faecal virome transplantation decreases symptoms of type 2 diabetes and obesity in a murine model
Rasmussen, T. S., Mentzel, C. M. J., Kot, W., Castro-Mejiá, J. L., Zuffa, S., Swann, J. R., Hansen, L. H., Vogensen, F. K., Hansen, A. K. & Nielsen, D. S., 2020, In: Gut. 69, 12, p. 2122-2130 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
148 Citations (Scopus) -
2019
A comparative genomics approach for identifying host-range determinants in Streptococcus thermophilus bacteriophages
Szymczak, P., Rau, M. H., Monteiro, J. M., Pinho, M. G., Filipe, S. R., Vogensen, F. K., Zeidan, A. A. & Janzen, T., 2019, In: Scientific Reports. 9, 14 p., 7991.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile25 Citations (Scopus)117 Downloads (Pure) -
Isolation and characterization of bacteriophages active against methicillin-resistant Staphylococcus pseudintermedius
Moodley, A., Kot, W., Nälgård, S., Jakociune, D., Neve, H., Hansen, L. H., Guardabassi, L. & Vogensen, F. K., 2019, In: Research in Veterinary Science. 122, p. 81-85 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
27 Citations (Scopus) -
Mouse vendor influence on the bacterial and viral gut composition exceeds the effect of diet
Rasmussen, T. S., de Vries, L., Kot, W., Hansen, L. H., Castro-Mejía, J. L., Vogensen, F. K., Hansen, A. K. & Nielsen, D. S., 2019, In: Viruses. 11, 5, 15 p., 435.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile54 Citations (Scopus)145 Downloads (Pure) -
Novel isolates of Streptococcus thermophilus bacteriophages from group 5093 identified with an improved multiplex PCR typing method
Szymczak, P., Vogensen, F. K. & Janzen, T., 2019, In: International Dairy Journal. 91, p. 18-24 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile2 Citations (Scopus)143 Downloads (Pure) -
2018
Cell Wall Glycans Mediate Recognition of the Dairy Bacterium Streptococcus thermophilus by Bacteriophages
Szymczak, P., Filipe, S. R., Covas, G., Vogensen, F. K., Neves, A. R. & Janzen, T., 1 Dec 2018, In: Applied and Environmental Microbiology. 84, 23, 15 p., e01847-18.Research output: Contribution to journal › Journal article › Research › peer-review
Open Access29 Citations (Scopus) -
Extraction and purification of viruses from fecal samples for metagenome and morphology analyses
Castro-Mejía, J. L., Deng, L., Vogensen, F. K., Reyes, A. & Nielsen, D. S., 2018, The Human Virome: Methods and Protocols. Moya, A. & Brocal, V. P. (eds.). Humana Press, p. 49-57 9 p. (Methods in Molecular Biology, Vol. 1838).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
6 Citations (Scopus) -
Gut microbiota recovery and immune response in ampicillin-treated mice
Castro Mejia, J. L., Jakesevic, M., Fabricius, N. F., Krych, L., Nielsen, D. S., Kot, W., Bendtsen, K. M. B., Vogensen, F. K., Hansen, C. H. F. & Hansen, A. K., 2018, In: Research in Veterinary Science. 118, p. 357-364 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
9 Citations (Scopus) -
Have you tried spermine? A rapid and cost-effective method to eliminate dextran sodium sulfate inhibition of PCR and RT-PCR
Krych, L., Kot, W., Bendtsen, K. M. B., Hansen, A. K., Vogensen, F. K. & Nielsen, D. S., 2018, In: Journal of Microbiological Methods. 144, p. 1-7 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
69 Citations (Scopus) -
Investigation of the bacteriophage community in induced lysates of undefined mesophilic mixed-strain DL-cultures using classical and metagenomic approaches
Muhammed, M. K., Olsen, M. L., Kot, W. P., Neve, H., Castro Mejia, J. L., Janzen, T., Hansen, L. H., Nielsen, D. S., Sørensen, S. J., Heller, K. J. & Vogensen, F. K., 2018, In: International Journal of Food Microbiology. 272, p. 61-72 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
2 Citations (Scopus) -
2017
A high-throughput qPCR system for simultaneous quantitative detection of dairy Lactococcus lactis and Leuconostoc bacteriophages
Muhammed, M. K., Krych, L., Nielsen, D. S. & Vogensen, F. K., 2017, In: PLOS ONE. 12, 3, 12 p., e0174223.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile18 Citations (Scopus)367 Downloads (Pure) -
Genomic Characterization of Dairy Associated Leuconostoc Species and Diversity of Leuconostocs in Undefined Mixed Mesophilic Starter Cultures
Frantzen, C. A., Kot, W., Pedersen, T. B., Ardö, Y. M., Broadbent, J. R., Neve, H., Hansen, L. H., Dal Bello, F., Ostlie, H. M., Kleppen, H. P., Vogensen, F. K. & Holo, H., 2017, In: Frontiers in Microbiology. 8, 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile54 Citations (Scopus)197 Downloads (Pure) -
Immunological effects of reduced mucosal integrity in the early life of BALB/c mice
Bendtsen, K. M. B., Hansen, C. H. F., Krych, L., Skovgaard, K., Kot, W. P., Vogensen, F. K. & Hansen, A. K., 2017, In: PLOS ONE. 12, 5, 20 p., 0176662.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile13 Citations (Scopus)229 Downloads (Pure) -
Metagenomic analysis of dairy bacteriophages: extraction method and pilot study on whey samples derived from using undefined and defined mesophilic starter cultures
Muhammed, M. K., Kot, W. P., Neve, H., Mahony, J., Castro Mejia, J. L., Krych, L., Hansen, L. H., Nielsen, D. S., Sørensen, S. J., Heller, K. J., van Sinderen, D. & Vogensen, F. K., 2017, In: Applied and Environmental Microbiology. 83, 19, 15 p., e00888-17.Research output: Contribution to journal › Journal article › Research › peer-review
Open Access24 Citations (Scopus) -
Novel Variants of Streptococcus thermophilus Bacteriophages Are Indicative of Genetic Recombination among Phages from Different Bacterial Species
Szymczak, P., Janzen, T., Neves, A. R., Kot, W., Hansen, L. H., Lametsch, R., Neve, H., Franz, C. M. A. P. & Vogensen, F. K., 2017, In: Applied and Environmental Microbiology. 85, 5, 16 p., e02748-16.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile29 Citations (Scopus)140 Downloads (Pure) -
Traditional Fermented Dairy Products of Ethiopia: A Review
Berhe, T., Vogensen, F. K., Ipsen, R., Seifu, E., Kurtu, M. Y. & Hansen, E. B., 2017, In: East African Journal of Sciences. 11, 2, p. 73-80 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile387 Downloads (Pure) -
2016
Clear plaque mutants of lactococcal phage TP901-1
Kot, W., Kilstrup, M., Vogensen, F. K. & Hammer, K., 2016, In: P L o S One. 11, 6, 10 p., e0155233.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile2 Citations (Scopus)220 Downloads (Pure) -
Effect of heterofermentative lactic acid bacteria of DL-starters in initial ripening of semi-hard cheese
Pedersen, T. B., Vogensen, F. K. & Ardö, Y. M., 2016, In: International Dairy Journal. 57, p. 72-79 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
23 Citations (Scopus) -
Real-time metabolomic analysis of lactic acid bacteria as monitored by in vitro NMR and chemometrics
Ebrahimi, P., Larsen, F. H., Jensen, H. M., Vogensen, F. K. & Engelsen, S. B., 2016, In: Metabolomics. 12, 4, 17 p., 77.Research output: Contribution to journal › Journal article › Research › peer-review
24 Citations (Scopus) -
Taxonomy of prokaryotic viruses: update from the ICTV bacterial and archaeal viruses subcommittee
Krupovic, M., Dutilh, B. E., Adriaenssens, E. M., Wittmann, J., Vogensen, F. K., Sullivan, M. B., Rumnieks, J., Prangishvili, D., Lavigne, R., Kropinski, A. M., Klumpp, J., Gillis, A., Enault, F., Edwards, R. A., Duffy, S., Clokie, M. R. C., Barylski, J., Ackermann, H. W. & Kuhn, J. H., 2016, In: Archives of Virology. 161, 4, p. 1095-1099 5 p.Research output: Contribution to journal › Comment/debate › Research › peer-review
69 Citations (Scopus) -
Transcriptome analysis of Lactococcus lactis subsp. lactis during milk acidification as affected by dissolved oxygen and the redox potential
Larsen, N., Moslehi Jenabian, S., Werner, B. B., Lund Jensen, M., Garrigues, C., Vogensen, F. K. & Jespersen, L., 2016, In: International Journal of Food Microbiology. 226, p. 5-12 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
18 Citations (Scopus) -
2015
Classification of Lactococcus lactis cell envelope proteinase based on gene sequencing, peptides formed after hydrolysis of milk, and computer modeling
Børsting, M. W., Qvist, K. B., Brockmann, E., Vindeløv, J., Pedersen, T. L., Vogensen, F. K. & Ardö, Y. M., 2015, In: Journal of Dairy Science. 98, 1, p. 68-77 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
13 Citations (Scopus) -
Contribution of volatiles to the antifungal effect of Lactobacillus paracasei in defined medium and yogurt
Aunsbjerg, S. D., Honoré, A. H., Marcussen, J., Ebrahimi, P., Vogensen, F. K., Benfeldt, C., Skov, T. & Knøchel, S., 2015, In: International Journal of Food Microbiology. 194, p. 46-53 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
66 Citations (Scopus) -
Development of a chemically defined medium for studying foodborne bacterial-fungal interactions
Aunsbjerg, S. D., Honoré, A. H., Vogensen, F. K. & Knøchel, S., 2015, In: International Dairy Journal. 45, p. 48-55 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
6 Citations (Scopus) -
Effect of dissolved oxygen on redox potential and milk acidification by lactic acid bacteria isolated from a DL-starter culture
Larsen, N., Werner, B. B., Vogensen, F. K. & Jespersen, L., 2015, In: Journal of Dairy Science. 98, 3, p. 1640-1651 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
22 Citations (Scopus) -
Influence of proteolytic Lactococcus lactis subsp. cremoris on ripening of reduced-fat Cheddar cheese made with camel chymosin
Børsting, M. W., Stallknecht, M. K., Vogensen, F. K. & Ardö, Y. M., 2015, In: International Dairy Journal. 41, p. 38-45 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
7 Citations (Scopus) -
Optimizing protocols for extraction of bacteriophages prior to metagenomic analyses of phage communities in the human gut
Castro Mejia, J. L., Muhammed, M. K., Kot, W. P., Neve, H., Franz, C. M. A. P., Hansen, L. H., Vogensen, F. K. & Nielsen, D. S., 2015, In: Microbiome. 3, 14 p., 64.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile106 Citations (Scopus)749 Downloads (Pure) -
Phytase-active lactic acid bacteria from sourdoughs: isolation and identification
Nuobariene, L., Cizeikiene, D., Gradzeviciute, E., Hansen, Å. S., Rasmussen, S. K., Juodeikiene, G. & Vogensen, F. K., 2015, In: Lebensmittel - Wissenschaft und Technologie. 63, 1, p. 766-772 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
61 Citations (Scopus) -
Role of volatiles in antifungal activity of a Lactobacillus paracasei against Penicillium strains
Aunsbjerg, S. D., Honoré, A. H., Ebrahimi, P., Vogensen, F. K., Skov, T. & Knøchel, S., 2015. 1 p.Research output: Contribution to conference › Conference abstract for conference › Research
File43 Downloads (Pure) -
2014
Bacteriophages of Leuconostoc, Oenococcus, and Weissella
Kot, W., Neve, H., Heller, K. J. & Vogensen, F. K., 2014, In: Frontiers in Microbiology. 5, p. 1-9 9 p., 186.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile53 Citations (Scopus)1842 Downloads (Pure) -
Characterization of the gut microbiota in leptin deficient obese mice: correlation to inflammatory and diabetic parameters
Ellekilde, M., Krych, L., Hansen, C. H. F., Hufeldt, M. R., Dahl, K., Hansen, L. H., Sørensen, S. J., Vogensen, F. K., Nielsen, D. S. & Hansen, A. K., 2014, In: Research in Veterinary Science. 96, 2, p. 241-250 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
77 Citations (Scopus) -
Complete genome sequences of four novel Lactococcus lactis phages distantly related to the Rare 1706 Phage Species
Kot, W. P., Neve, H., Vogensen, F. K., Heller, K. J., Sørensen, S. J. & Hansen, L. H., 2014, In: Genome Announcements. 2, 4, 2 p., e00265-14.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile7 Citations (Scopus)1280 Downloads (Pure) -
DPS - a rapid method for genome sequencing of DNA-containing bacteriophages directly from a single plaque
Kot, W. P., Vogensen, F. K., Sørensen, S. J. & Hansen, L. H., 2014, In: Journal of Virological Methods. 196, p. 152-156 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
33 Citations (Scopus) -
Genome sequence of Leuconostoc mesenteroides subsp. cremoris strain T26, isolated from mesophilic undefined cheese starter
Pedersen, T. B., Kot, W. P., Hansen, L. H., Sørensen, S. J., Broadbent, J. R., Vogensen, F. K. & Ardö, Y. M., 2014, In: Genome Announcements. 2, 3, 1 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile7 Citations (Scopus)1318 Downloads (Pure) -
Genome sequences of two Leuconostoc pseudomesenteroides strains isolated from Danish dairy starter cultures
Pedersen, T. B., Kot, W. P., Hansen, L. H., Sørensen, S. J., Broadbent, J. R., Vogensen, F. K. & Ardö, Y. M., 2014, In: Genome Announcements. 2, 3, p. 2 e00484-14.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile5 Citations (Scopus)1064 Downloads (Pure) -
Sequence and comparative analysis of Leuconostoc dairy bacteriophages
Kot, W. P., Hansen, L. H., Neve, H., Hammer, K., Jacobsen, S., Pedersen, P. D., Sørensen, S. J., Heller, K. J. & Vogensen, F. K., 2014, In: International Journal of Food Microbiology. 176, p. 29-37 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
21 Citations (Scopus) -
Transfer of gut microbiota from lean and obese mice to antibiotic-treated mice
Ellekilde, M., Selfjord, E. M., Larsen, C. S., Jakesevic, M., Rune, I., Christensen, B. T., Vogensen, F. K., Nielsen, D. S., Bahl, M. I., Licht, T. R., Hansen, A. K. & Hansen, C. H. F., 2014, In: Scientific Reports. 4, 8 p., 5922.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile123 Citations (Scopus)268 Downloads (Pure) -
2013
2-heptyl-formononetin increases cholesterol and induces hepatic steatosis in mice
Andersen, C., Schjoldager, J. G., Tortzen, C., Vegge, A., Hufeldt, M. R., Skaanild, M. T., Vogensen, F. K., Kristiansen, K., Hansen, A. J. K. & Nielsen, J., 2013, In: Journal of Biomedicine and Biotechnology. 2013, 13 p., 926942.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile9 Citations (Scopus)4870 Downloads (Pure) -
Classification of lytic bacteriophages attacking dairy Leuconostoc starter strains
Ali, Y., Kot, W. P., Atamer, Z., Hinrichs, J., Vogensen, F. K., Heller, K. J. & Neve, H., 2013, In: Applied and Environmental Microbiology. 79, 12, p. 3628-3636 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
28 Citations (Scopus) -
Development and validation of a chemically defined medium used for studying foodborne bacterial-fungal interactions
Nielsen, S. D. A., Honoré, A. H., Vogensen, F. K. & Knøchel, S., 2013. 1 p.Research output: Contribution to conference › Conference abstract for conference › Research
File561 Downloads (Pure) -
Effect of Lactobacillus salivarius Ls-33 on fecal microbiota in obese adolescents
Larsen, N., Vogensen, F. K., Gøbel, R. J., Michaelsen, K. F., Forssten, S. D., Lahtinen, S. J. & Jakobsen, M., 2013, In: Clinical Nutrition. 32, 6, p. 935-940 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
87 Citations (Scopus)