A bacterial and viral genome catalogue from Atlantic salmon highlights diverse gut microbiome compositions at pre- and post-smolt life stages

Kale, V., Baldi, G., Beracochea, M., Clausen, C., Escobar-Zepeda, A., Leanti La Rosa, S., Lecaudey, L. A., Li, S., Mak, S. S. T., Martin, M. D., Martin Bideguren, G., Pless, L. A., Rasmussen, J. A., Rogers, A. B., Sveier, H., de León, A.V.-P., Verissimo, A., Gilbert, M. T. P., Richardson, L. & Limborg, M. T. & 1 others, Finn, R. D., 2025, In: Animal Microbiome. 7, 18 p., 85.

Research output: Contribution to journal › Journal article › Research › peer-review

Hologenomic data generation and analysis in wild vertebrates

Pietroni, C., Gaun, N., Leonard, A., Lauritsen, J., Martin-Bideguren, G., Odriozola, I., Aizpurua, O., Alberdi, A. & Eisenhofer, R., 2025, In: Methods in Ecology and Evolution. 16, 1, p. 97-107 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Robust, Open-Source and Automation-Friendly DNA Extraction Protocol for Hologenomic Research

Lauritsen, J. G., Carøe, C., Gaun, N., Martin-Bideguren, G., Leonard, A., Eisenhofer, R., Odriozola, I., Gilbert, M. T. P., Aizpurua, O., Alberdi, A. & Pietroni, C., 2025, In: Molecular Ecology Resources. 25, 8, 12 p., e70042.

Research output: Contribution to journal › Journal article › Research › peer-review

The Earth Hologenome Initiative: Data Release 1

Gaun, N., Pietroni, C., Martin-Bideguren, G., Lauritsen, J., Aizpurua, O., Fernandes, J. M., Ferreira, E., Aubret, F., Sarraude, T., Perry, C., Wauters, L., Romeo, C., Spada, M., Tranquillo, C., Sutton, A. O., Griesser, M., Warrington, M. H., de Lanuza, G. P. I., Abalos, J. & Aguilar, P. & 21 others, de la Cruz, F., Juste, J., Alonso-Alonso, P., Groombridge, J., Louch, R., Ruhomaun, K., Henshaw, S., Cabido, C., Barrio, I. G., Šunje, E., Hosner, P., Prates, I., While, G. M., García-Roa, R., Uller, T., Feiner, N., Bonaccorso, E., Klein-Ipsen, P., Rotovnik, R. M., Alberdi, A. & Eisenhofer, R., 2025, In: GigaScience. 14, 9 p., giaf102.

Research output: Contribution to journal › Journal article › Research › peer-review

A global initiative for ecological and evolutionary hologenomics

Leonard, A., Abalos, J. (Member of author collaboration), Adhola, T. (Member of author collaboration), Aguirre, W. (Member of author collaboration), Aizpurua, O. (Member of author collaboration), Ali, S. (Member of author collaboration), Andreone, F. (Member of author collaboration), Aubret, F. (Member of author collaboration), Ávila-Palma, H. D. (Member of author collaboration), Alcantara, L. F. B. (Member of author collaboration), Beltrán, J. F. (Member of author collaboration), Berg, R. (Member of author collaboration), Berg, T. B. (Member of author collaboration), Bertolino, S. (Member of author collaboration), Blumstein, D. T. (Member of author collaboration), Boldgiv, B. (Member of author collaboration), Borowski, Z. (Member of author collaboration), Boubli, J. P. (Member of author collaboration), Büchner, S. (Member of author collaboration) & Cabido, C. (Member of author collaboration) & 96 others, Camacho, C. (Member of author collaboration), Chaparro, J. C. (Member of author collaboration), Charmantier, A. (Member of author collaboration), D'Elía, G. (Member of author collaboration), da Silva, L. P. (Member of author collaboration), Dalsgaard, B., de Franceschi, C. (Member of author collaboration), de la Cruz, F. (Member of author collaboration), de la Sancha, N. U. (Member of author collaboration), Denoël, M. (Member of author collaboration), Eisenhofer, R. (Member of author collaboration), Feiner, N. (Member of author collaboration), Fernandes, J. M. (Member of author collaboration), Figuerola, J. (Member of author collaboration), Fusani, L. (Member of author collaboration), Gangoso, L. (Member of author collaboration), Gaun, N. (Member of author collaboration), Thomas, M. (Member of author collaboration), Gilbert, P. (Member of author collaboration), Gomez-Mestre, I. (Member of author collaboration), Graves, G. R. (Member of author collaboration), Groombridge, J. (Member of author collaboration), Hardouin, E. A. (Member of author collaboration), Hernández, M. (Member of author collaboration), Montalvo, L. G. H. (Member of author collaboration), Hodder, K. (Member of author collaboration), Hosner, P. A. (Member of author collaboration), Hurtado, N. (Member of author collaboration), Juste, J. (Member of author collaboration), Knowles, S. C. L. (Member of author collaboration), Kohl, K. D. (Member of author collaboration), Korine, C. (Member of author collaboration), Kramer-Schadt, S. (Member of author collaboration), Kornilev, Y. V. (Member of author collaboration), Lambin, X. (Member of author collaboration), Lattenkamp, E. Z. (Member of author collaboration), Lauritsen, J. (Member of author collaboration), Li, G. (Member of author collaboration), López, C. M. (Member of author collaboration), Baucells, A. L. (Member of author collaboration), Magory Cohen, T. (Member of author collaboration), Manzo, E. (Member of author collaboration), Marteau, M. (Member of author collaboration), Martin, L. B. (Member of author collaboration), Martin Bideguren, G. (Member of author collaboration), Mazzamuto, M. V. (Member of author collaboration), Monadjem, A. (Member of author collaboration), Nietlisbach, P. (Member of author collaboration), Øksnebjerg, D. B. (Member of author collaboration), Packer, J. G. (Member of author collaboration), Pepke, M. L. (Member of author collaboration), Peralta-Sánchez, J. M. (Member of author collaboration), Perdomo, A. (Member of author collaboration), i de Lanuza, G. P. (Member of author collaboration), Pietroni, C. (Member of author collaboration), Poyet, M. (Member of author collaboration), Rahbek, C. (Member of author collaboration), Ramaraj, T. (Member of author collaboration), Caldas, Y. R. (Member of author collaboration), Razgour, O. (Member of author collaboration), Rebelo, H. (Member of author collaboration), Reif, J. (Member of author collaboration), Rimbach, R. (Member of author collaboration), Rocha, R. (Member of author collaboration), Fernandes, C. R. (Member of author collaboration), Romeo, C. (Member of author collaboration), Ruuskanen, S. (Member of author collaboration), Sakaluk, S. K. (Member of author collaboration), Santicchia, F. (Member of author collaboration), Sarraude, T. (Member of author collaboration), Sørås, R. (Member of author collaboration), Spada, M. (Member of author collaboration), Steele, M. A. (Member of author collaboration), Stothart, M. R. (Member of author collaboration), Sunje, E. (Member of author collaboration), Sutton, A. O. (Member of author collaboration), Szulkin, M. (Member of author collaboration), Takahata, Y. (Member of author collaboration), Thompson, C. F. (Member of author collaboration), Thorup, K. (Member of author collaboration), Tomazetto, G. (Member of author collaboration), Torrent, L. (Member of author collaboration), Toshkova, N. (Member of author collaboration), Tranquillo, C. (Member of author collaboration), Turcios-Casco, M. A. (Member of author collaboration), Uller, T. (Member of author collaboration), van Riemsdijk, I., Velo-Antón, G. (Member of author collaboration), Verbeylen, G. (Member of author collaboration), Videvall, E. (Member of author collaboration), Voigt, C. C. (Member of author collaboration), Wauters, L. A. (Member of author collaboration), Wellenreuther, M. (Member of author collaboration), Yanchukov, A. (Member of author collaboration), Alberdi, A. & Earth Hologenome Initiative Consortium, 2024, In: Trends in Ecology and Evolution. 39, 7, p. 616-620 5 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Quantitative Synthesis of Microbe-Driven Acclimation and Adaptation in Wild Vertebrates

Bideguren, G. M., Razgour, O. & Alberdi, A., 2024, In: Evolutionary Applications. 17, 10, 7 p., e70025.

Research output: Contribution to journal › Review › peer-review

Gut microbiota differences between paired intestinal wall and digesta samples in three small species of fish

Nyholm, L., Odriozola, I., Martin Bideguren, G., Aizpurua, O. & Alberdi, A., 2022, In: PeerJ. 10, 22 p., e12992.

Research output: Contribution to journal › Journal article › Research › peer-review