Jacob Agerbo Rasmussen

Research output

Research output per year 2020 2021 2022 2023 2024 2024

• 251 Citations
• 26 Journal article
• 2 Comment/debate
• 1 Ph.D. thesis
• 1 Review

Research output per year

Research output per year

Search results

• 2024

  Ancient reindeer mitogenomes reveal island-hopping colonisation of the Arctic archipelagos

  Hold, K., Lord, E., Brealey, J. C., Le Moullec, M., Bieker, V. C., Ellegaard, M. R., Rasmussen, J. A., Kellner, F. L., Guschanski, K., Yannic, G., Røed, K. H., Hansen, B. B., Dalén, L., Martin, M. D. & Dussex, N., 2024, In: Scientific Reports. 14, 14 p., 4143.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  1 Citation (Scopus)

  8 Downloads (Pure)

• A practical introduction to holo-omics

  Odriozola, I., Rasmussen, J. A., Gilbert, M. T. P., Limborg, M. T. & Alberdi, A., 2024, In: Cell Reports Methods. 4, 7, 12 p., 100820.

  Research output: Contribution to journal › Review › Research › peer-review

  Open Access

  File

• A zebrafish model to elucidate the impact of host genes on the microbiota

  Thormar, E. A., Rasmussen, J. A., Mathiessen, H., Marana, M. H., Clausen, C. G., Hansen, M., Kodama, M., von Gersdorff Jørgensen, L. & Limborg, M. T., 2024, In: Environmental DNA. 6, 1, 20 p., e513.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  23 Downloads (Pure)

• Exploring the microbial diversity of novel misos with metagenomics

  Kothe, C. I., Rasmussen, J. A., Mak, S. S. T., Gilbert, M. T. P. & Evans, J., 2024, In: Food Microbiology. 117, 9 p., 104372.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  1 Citation (Scopus)

  18 Downloads (Pure)

• Host-gut microbiota interactions shape parasite infections in farmed Atlantic salmon

  Brealey, J. C., Kodama, M., Rasmussen, J. A., Hansen, S. B., Santos-Bay, L., Lecaudey, L. A., Hansen, M., Fjære, E., Myrmel, L. S., Madsen, L., Bernhard, A., Sveier, H., Kristiansen, K., Gilbert, M. T. P., Martin, M. D. & Limborg, M. T., 2024, In: mSystems. 9, 2, 29 p., e01043-23.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  3 Citations (Scopus)

  20 Downloads (Pure)

• Intestinal microbial profiles of wild Alaskan rainbow trout (Oncorhynchus mykiss) characterized by 16S rRNA amplicon data

  Katirtzoglou, A., Rasmussen, J. A., Schindler, D. E. & Limborg, M. T., 2024, In: Data in Brief. 57, 8 p., 110902.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File

• Succession of microbial community composition and secondary metabolism during marine biofilm development

  Bech, P. K., Jarmusch, S. A., Rasmussen, J. A., Limborg, M. T., Gram, L. & Henriksen, N. N. S. E., 2024, In: ISME communications. 4, 1, 12 p., ycae006.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  7 Downloads (Pure)
• 2023

  Adaptation to the High-Arctic island environment despite long-term reduced genetic variation in Svalbard reindeer

  Dussex, N., Tørresen, O. K., van der Valk, T., Le Moullec, M., Veiberg, V., Tooming-Klunderud, A., Skage, M., Garmann-Aarhus, B., Wood, J., Rasmussen, J. A., Pedersen, Å. Ø., Martin, S. L. F., Røed, K. H., Jakobsen, K. S., Dalén, L., Hansen, B. B. & Martin, M. D., 2023, In: iScience. 26, 10, 16 p., 107811.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  6 Citations (Scopus)

  13 Downloads (Pure)

• An ethnographic framework for identifying dog sledding in the archaeological record

  Vitale, E., Rasmussen, J. A., Grønnow, B., Hansen, A. J., Meldgaard, M. & Feuerborn, T. R., 2023, In: Journal of Archaeological Science. 159, 10 p., 105856.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  41 Downloads (Pure)

• Co-diversification of an intestinal Mycoplasma and its salmonid host

  Rasmussen, J. A., Kiilerich, P., Madhun, A. S., Waagbø, R., Lock, E. J. R., Madsen, L., Gilbert, M. T. P., Kristiansen, K. & Limborg, M. T., 2023, In: ISME Journal. 17, 5, p. 682-692 11 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  29 Downloads (Pure)

• Genome-resolving metagenomics reveals wild western capercaillies (Tetrao urogallus) as avian hosts for antibiotic-resistance bacteria and their interactions with the gut-virome community

  Rasmussen, J. A. & Chua, P. Y. S., 2023, In: Microbiological Research. 271, 11 p., 127372.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  1 Citation (Scopus)

  10 Downloads (Pure)

• Genomic diversity and differentiation between island and mainland populations of white-tailed eagles (Haliaeetus albicilla)

  Hansen, C. C. R., Láruson, Á. J., Rasmussen, J. A., Ballesteros, J. A. C., Sinding, M-H. S., Hallgrimsson, G. T., von Schmalensee, M., Stefansson, R. A., Skarphédinsson, K. H., Labansen, A. L., Leivits, M., Sonne, C., Dietz, R., Skelmose, K., Boertmann, D., Eulaers, I., Martin, M. D., Helgason, A. S., Gilbert, M. T. P. & Pálsson, S., 2023, In: Molecular Ecology. 32, 8, p. 1925-1942 18 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  10 Downloads (Pure)

• Unexpected fishy microbiomes

  Limborg, M. T., Chua, P. Y. S. & Rasmussen, J. A., 2023, In: Nature Reviews Microbiology. 21, 6, p. 346 1 p.

  Research output: Contribution to journal › Comment/debate › Research › peer-review
  5 Citations (Scopus)
• 2022

  A multi-omics approach unravels metagenomic and metabolic alterations of a probiotic and synbiotic additive in rainbow trout (Oncorhynchus mykiss)

  Rasmussen, J. A., Villumsen, K. R., Ernst, M., Hansen, M., Forberg, T., Gopalakrishnan, S., Gilbert, M. T. P., Bojesen, A. M., Kristiansen, K. & Limborg, M. T., 2022, In: Microbiome. 10, 19 p., 21.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  42 Citations (Scopus)

  83 Downloads (Pure)

• A strategic model of a host-microbe-microbe system reveals the importance of a joint host-microbe immune response to combat stress-induced gut dysbiosis

  Scheuring, I., Rasmussen, J. A., Bozzi, D. & Limborg, M. T., 2022, In: Frontiers in Microbiology. 13, 12 p., 912806.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  28 Downloads (Pure)

• Distinctive mitogenomic lineages within populations of White-tailed Eagles: [Inkl. Corrigendum]

  Hansen, C. C. R., Baleka, S., Guðjónsdóttir, S. M., Rasmussen, J. A., Ballesteros, J. A. C., Hallgrimsson, G. T., Stefansson, R. A., von Schmalensee, M., Skarphedinsson, K. H., Labansen, A. L., Leivits, M., Skelmose, K., Sonne, C., Dietz, R., Boertmann, D., Eulaers, I., Martin, M. D. & Pálsson, S., 2022, In: Ornithology. 139, 2, 14 p., ukab081.

  Research output: Contribution to journal › Journal article › Research › peer-review

• Genomic evidence refutes the hypothesis that the Bornean banteng is a distinct species

  Sun, X., Ciucani, M. M., Rasmussen, J. A., Gilbert, M. T. P. & Sinding, M-H. S., 2022, In: BMC Ecology and Evolution. 22, 4 p., 110.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  20 Downloads (Pure)

• How salmon hooked me: Host-microbe interactions in aquaculture

  Rasmussen, J. A., 2022, Department of Biology, Faculty of Science, University of Copenhagen. 111 p.

  Research output: Book/Report › Ph.D. thesis › Research

  File

• Integrative analyses of probiotics, pathogenic infections and host immune response highlight the importance of gut microbiota in understanding disease recovery in rainbow trout (Oncorhynchus mykiss)

  Rasmussen, J. A., Villumsen, K. R., Jørgensen, L. V. G., Forberg, T., Zuo, S., Kania, P. W., Buchmann, K., Kristiansen, K., Bojesen, A. M. & Limborg, M. T., 2022, In: Journal of Applied Microbiology. 132, 4, p. 3201-3216 16 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  23 Downloads (Pure)

• Microbiome "Inception": an Intestinal Cestode Shapes a Hierarchy of Microbial Communities Nested within the Host

  Brealey, J. C., Lecaudey, L. A., Kodama, M., Rasmussen, J. A., Sveier, H., Dheilly, N. M., Martin, M. D. & Limborg, M. T., 2022, In: mBio. 13, 3, 14 p., e00679-22.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  12 Citations (Scopus)

  27 Downloads (Pure)

• Rhizosphere bacterial communities differ among traditional maize landraces

  Lund, M., Rasmussen, J. A., Ramos-Madrigal, J., Sawers, R., Gilbert, M. T. P. & Barnes, C. J., 2022, In: Environmental DNA. 4, 6, p. 1241-1249 9 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  8 Citations (Scopus)

  30 Downloads (Pure)

• Taking metagenomics under the wings

  Chua, P. Y. S. & Rasmussen, J. A., 2022, In: Nature Reviews Microbiology. 20, 8, p. 447 1 p.

  Research output: Contribution to journal › Comment/debate › Research › peer-review

• The Australian dingo is an early offshoot of modern breed dogs

  Field, M. A., Yadav, S., Dudchenko, O., Esvaran, M., Rosen, B. D., Skvortsova, K., Edwards, R. J., Keilwagen, J., Cochran, B. J., Manandhar, B., Bustamante, S., Rasmussen, J. A., Melvin, R. G., Chernoff, B., Omer, A., Colaric, Z., Chan, E. K. F., Minoche, A. E., Smith, T. P. L., Gilbert, M. T. P. & 5 others, Bogdanovic, O., Zammit, R. A., Thomas, T., Aiden, E. L. & Ballard, J. W. O., 2022, In: Science Advances. 8, 16, 14 p., eabm5944.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  12 Downloads (Pure)
• 2021

  eDNA‐based biomonitoring at an experimental German vineyard to characterize how management regimes shape ecosystem diversity

  Rasmussen, J. A., Nielsen, M., Mak, S. S. T., Döring, J., Klincke, F., Gopalakrishnan, S., Dunn, R., Kauer, R. & Gilbert, M. T. P., 2021, In: Environmental DNA. 3, 1, p. 70-82 12 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  14 Citations (Scopus)

  60 Downloads (Pure)

• Feasibility of applying shotgun metagenomic analyses to grapevine leaf, rhizosphere and soil microbiome characterisation

  Azevedo-Silva, D., Rasmussen, J. A., Carneiro, M., Gilbert, M. T. P. & Azevedo, H., 2021, In: Australian Journal of Grape and Wine Research. 27, 4, p. 519-526 8 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

• Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts

  Rasmussen, J. A., Villumsen, K. R., Duchêne, D. A., Puetz, L. C., Delmont, T. O., Sveier, H., Jørgensen, L. V. G., Præbel, K., Martin, M. D., Bojesen, A. M., Gilbert, M. T. P., Kristiansen, K. & Limborg, M. T., 2021, In: Communications Biology. 4, 10 p., 579.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  64 Citations (Scopus)

  55 Downloads (Pure)

• Kouprey (Bos sauveli) genomes unveil polytomic origin of wild Asian Bos

  Sinding, M-H. S., Ciucani, M. M., Ramos-Madrigal, J., Carmagnini, A., Rasmussen, J. A., Feng, S., Chen, G., Vieira, F. G., Mattiangeli, V., Ganjoo, R. K., Larson, G., Sicheritz-Pontén, T., Petersen, B., Frantz, L., Gilbert, M. T. P. & Bradley, D. G., 2021, In: iScience. 24, 11, 18 p., 103226.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  19 Downloads (Pure)

• Molecular parallelisms between pigmentation in the avian iris and the integument of ectothermic vertebrates

  Andrade, P., Gazda, M. A., Araújo, P. M., Afonso, S., Rasmussen, J. A., Marques, C. I., Lopes, R. J., Gilbert., M. T. P. & Carneiro, M., 2021, In: PLOS Genetics. 17, 2, 16 p., 1009404.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  7 Citations (Scopus)

  40 Downloads (Pure)

• Salmon gut microbiota correlates with disease infection status: potential for monitoring health in farmed animals

  Bozzi, D., Rasmussen, J. A., Carøe, C., Sveier, H., Nordøy, K., Gilbert, M. T. P. & Limborg, M. T., 2021, In: BMC Animal Microbiome. 3, 1, 17 p., 30.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  83 Citations (Scopus)

  42 Downloads (Pure)
• 2020

  Metagenomic analysis of historical herbarium specimens reveals a postmortem microbial community

  Bieker, V. C., Barreiro, F. S., Rasmussen, J. A., Brunier, M., Wales, N. & Martin, M. D., 2020, In: Molecular Ecology Resources. 20, 5, p. 1206-1219 14 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  4 Citations (Scopus)

  53 Downloads (Pure)