Research output per year
Research output per year
Personal profile
Short presentation
Associate professor in Bioinformatics. My research area is ncRNA bioinformatics. This includes: Secondary structure prediction, structural ncRNA alignment, prediction of RNA-RNA interactions, and ncRNA genome annotation.
I primarely teach programming for beginners and bioinformatics.
Current research
Algorithms and predictions, typically with respect to non-coding RNAs
Teaching
- Bioinformatics
- ncRNA
- Programming
Keywords
- Faculty of Health and Medical Sciences
Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
Research output
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The Bacillaceae-1 RNA motif comprises two distinct classes
González-Tortuero, E., Anthon, C., Havgaard, J. H., Geissler, A. S., Breüner, A., Hjort, C., Gorodkin, J. & Seemann, S. E., 2022, In: Gene. 841, 146756.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile1 Citation (Scopus)33 Downloads (Pure) -
Using GPU to accelerate the pairwise structural RNA alignment with base pair probabilities
Sundfeld, D., Teodoro, G., Havgaard, J. H., Gorodkin, J. & Melo, A. C. M. A., 2020, In: Concurrency Computation. 32, 10, e5468.Research output: Contribution to journal › Journal article › Research › peer-review
4 Citations (Scopus) -
Epigenetic and Transcriptomic Characterization of Pure Adipocyte Fractions From Obese Pigs Identifies Candidate Pathways Controlling Metabolism
Jacobsen, M. J., Havgaard, J. H., Anthon, C., Mentzel, C. M. J., Cirera, S., Krogh, P. M., Pundhir, S., Karlskov-Mortensen, P., Bruun, C. S., Lesnik, P., Guerin, M., Gorodkin, J., Jørgensen, C. B., Fredholm, M. & Barrès, R., 2019, In: Frontiers in Genetics. 10, 13 p., 1268.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile8 Citations (Scopus)121 Downloads (Pure) -
CRISPR-Cas9 off-targeting assessment with nucleic acid duplex energy parameters
Alkan, F., Wenzel, A., Anthon, C., Havgaard, J. H. & Gorodkin, J., 2018, In: Genome Biology. 19, 13 p., 177.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile109 Citations (Scopus)197 Downloads (Pure) -
Alignment-free comparative genomic screen for structured RNAs using coarse-grained secondary structure dot plots
Kato, Y., Gorodkin, J. & Havgaard, J. H., Dec 2017, In: BMC Genomics. 18, 1, 935.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile1 Citation (Scopus)181 Downloads (Pure) -
Assessing the miRNA sponge potential of RUNX1T1 in t(8;21) acute myeloid leukemia
Junge, A., Zandi, R., Havgaard, J. H., Gorodkin, J. & Cowland, J. B., 2017, In: Gene. 615, p. 35-40 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
12 Citations (Scopus) -
CUDA-Sankoff: Using GPU to Accelerate the Pairwise Structural RNA Alignment
Sundfeld, D., Havgaard, J. H., Gorodkin, J. & De Melo, A. C. M. A., 2017, Proceedings: 2017 25th Euromicro International Conference on Parallel, Distributed and Network-Based Processing, PDP 2017. IEEE, p. 295-302 8 p. 7912663Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
5 Citations (Scopus) -
RNAscClust: Clustering RNA sequences using structure conservation and graph based motifs
Miladi, M., Junge, A., Costa, F., Seemann, S. E., Havgaard, J. H., Gorodkin, J. & Backofen, R., 2017, In: Bioinformatics. 33, 14, p. 2089-2096 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile26 Citations (Scopus)123 Downloads (Pure)
Activities
- 3 Organisation of and participation in conference
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Annual International Conference on Intelligent Systems for Molecular Biology
Jakob Hull Havgaard (Participant)
21 Jul 2007 → 25 Jul 2007Activity: Participating in an event - types › Organisation of and participation in conference
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European Conference on Computational Biology
Jakob Hull Havgaard (Participant)
21 Jul 2007 → 25 Jul 2007Activity: Participating in an event - types › Organisation of and participation in conference
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TBI Winterseminar
Jakob Hull Havgaard (Participant)
18 Feb 2007 → 24 Feb 2007Activity: Participating in an event - types › Organisation of and participation in conference