Jakob Nybo Nissen

Search results

• 2024

  Taxometer: Improving taxonomic classification of metagenomics contigs

  Kutuzova, S., Nielsen, M., Piera, P., Nissen, J. N. & Rasmussen, S., 2024, In: Nature Communications. 15, 1, 9 p., 8357.

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• 2023

  Adversarial and variational autoencoders improve metagenomic binning

  Líndez, P. P., Johansen, J., Kutuzova, S., Sigurdsson, A. I., Nissen, J. N. & Rasmussen, S., 2023, In: Communications Biology . 6, 10 p., 1073.

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  7 Citations (Scopus)

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• Discovery of drug-omics associations in type 2 diabetes with generative deep-learning models: [with Author Correction]

  Allesøe, R. L., Lundgaard, A. T., Hernández Medina, R., Aguayo-Orozco, A., Johansen, J., Nissen, J. N., Brorsson, C., Mazzoni, G., Niu, L., Biel, J. H., Brasas, V., Webel, H., Benros, M. E., Pedersen, A. G., Chmura, P. J., Jacobsen, U. P., Mari, A., Koivula, R., Mahajan, A., Vinuela, A. & 31 others, Tajes, J. F., Sharma, S., Haid, M., Hong, M-G., Musholt, P. B., De Masi, F., Vogt, J., Pedersen, H. K., Gudmundsdottir, V., Jones, A., Kennedy, G., Bell, J., Thomas, E. L., Frost, G., Thomsen, H., Hansen, E., Hansen, T. H., Vestergaard, H., Muilwijk, M., Blom, M. T., 't Hart, L. M., Pattou, F., Raverdy, V., Brage, S., Ridderstråle, M., Pedersen, O., Hansen, T., Banasik, K., Rasmussen, S., Brunak, S. & IMI-DIRECT consortium, 2023, In: Nature Biotechnology. 41, 3, p. 399–408 18 p.

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  40 Citations (Scopus)

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• Experimental infection of pigs and ferrets with "pre-pandemic," human-adapted, and swineadapted variants of the H1N1pdm09 influenza A virus reveals significant differences in viral dynamics and pathological manifestations

  Kristensen, C., Laybourn, H. A., Crumpton, J. C., Martiny, K., Webb, A., Ryt-Hansen, P., Trebbien, R., Jensen, H. E., Nissen, J. N., Skovgaard, K., Webby, R. J. & Larsen, L. E., 2023, In: PLoS Pathogens. 19, 12, 23 p., e1011838.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  7 Citations (Scopus)

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• 2022

  Critical Assessment of Metagenome Interpretation: the second round of challenges

  Meyer, F., Fritz, A., Deng, Z. L., Koslicki, D., Lesker, T. R., Gurevich, A., Robertson, G., Alser, M., Antipov, D., Beghini, F., Bertrand, D., Brito, J. J., Brown, C. T., Buchmann, J., Buluç, A., Chen, B., Chikhi, R., Clausen, P. T. L. C., Cristian, A., Dabrowski, P. W. & 83 others, Darling, A. E., Egan, R., Eskin, E., Georganas, E., Goltsman, E., Gray, M. A., Hansen, L. H., Hofmeyr, S., Huang, P., Irber, L., Jia, H., Jørgensen, T. S., Kieser, S. D., Klemetsen, T., Kola, A., Kolmogorov, M., Korobeynikov, A., Kwan, J., LaPierre, N., Lemaitre, C., Li, C., Limasset, A., Malcher-Miranda, F., Mangul, S., Marcelino, V. R., Marchet, C., Marijon, P., Meleshko, D., Mende, D. R., Milanese, A., Nagarajan, N., Nissen, J., Nurk, S., Oliker, L., Paoli, L., Peterlongo, P., Piro, V. C., Porter, J. S., Rasmussen, S., Rees, E. R., Reinert, K., Renard, B., Robertsen, E. M., Rosen, G. L., Ruscheweyh, H. J., Sarwal, V., Segata, N., Seiler, E., Shi, L., Sun, F., Sunagawa, S., Sørensen, S. J., Thomas, A., Tong, C., Trajkovski, M., Tremblay, J., Uritskiy, G., Vicedomini, R., Wang, Z., Wang, Z., Wang, Z., Warren, A., Willassen, N. P., Yelick, K., You, R., Zeller, G., Zhao, Z., Zhu, S., Zhu, J., Garrido-Oter, R., Gastmeier, P., Hacquard, S., Häußler, S., Khaledi, A., Maechler, F., Mesny, F., Radutoiu, S., Schulze-Lefert, P., Smit, N., Strowig, T., Bremges, A., Sczyrba, A. & McHardy, A. C., 2022, In: Nature Methods. 19, 4, p. 429-440

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  139 Citations (Scopus)

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• Severe Human Case of Zoonotic Infection with Swine-Origin Influenza A Virus, Denmark, 2021

  Andersen, K. M., Vestergaard, L. S., Nissen, J. N., George, S. J., Ryt-Hansen, P., Hjulsager, C. K., Krog, J. S., Skov, M. N., Alexandersen, S., Larsen, L. E. & Trebbien, R., 2022, In: Emerging Infectious Diseases . 28, 12, p. 2561-2564 4 p.

  Research output: Contribution to journal › Letter › Research › peer-review
  6 Citations (Scopus)