Research output per year
Research output per year
Personal profile
Short presentation
Description of my research interests, activities and complete list of peer reviewed papers can be found at the home page for Center for non-coding RNA in Technology and Health: http://rth.dk and at the research group website: http://ivh.ku.dk/bioinformatics.
Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
Research output
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An Overview and Comparative Analysis of CRISPR-SpCas9 gRNA Activity Prediction Tools
Yuan, H., Song, C., Xu, H., Sun, Y., Anthon, C., Bolund, L., Lin, L., Benabdellah, K., Lee, C., Hou, Y., Gorodkin, J. & Luo, Y., 2025, In: CRISPR Journal. 8, 2, p. 89-104 16 p.Research output: Contribution to journal › Review › peer-review
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Photosynthesis in Synechocystis sp. PCC 6803 is not optimally regulated under very high CO2
Carrasquer-alvarez, E., Hoffmann, U. A., Geissler, A. S., Knave, A., Gorodkin, J., Seemann, S. E., Hudson, E. P. & Frigaard, N.-U., 2025, In: Applied Microbiology and Biotechnology. 109, 1, 19 p., 33.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile5 Downloads (Pure) -
Clusters of mammalian conserved RNA structures in UTRs associate with RBP binding sites
Gadekar, V. P., Welford Munk, A., Miladi, M., Junge, A., Backofen, R., Seemann, S. E. & Gorodkin, J., 2024, In: NAR Genomics and Bioinformatics. 6, 3, 16 p., lqae089.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile20 Downloads (Pure) -
Comparative RNA Genomics
Backofen, R., Gorodkin, J., Hofacker, I. L. & Stadler, P. F., 2024, Comparative Genomics: Methods and Protocols. Setubal , J. C., Stadler, P. F. & Stoye, J. (eds.). 2. ed. Humana Press, p. 347-393 (Methods in molecular biology (Clifton, N.J.), Vol. 2802).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
2 Citations (Scopus) -
Generating universal anti-CD19 CAR T cells with a defined memory phenotype by CRISPR/Cas9 editing and safety evaluation of the transcriptome
Pavlovic, K., Carmona-Luque, M., Corsi, G. I., Maldonado-Pérez, N., Molina-Estevez, F. J., Peralbo-Santaella, E., Cortijo-Gutiérrez, M., Justicia-Lirio, P., Tristán-Manzano, M., Ronco-Díaz, V., Ballesteros-Ribelles, A., Millán-López, A., Heredia-Velázquez, P., Fuster-García, C., Cathomen, T., Seemann, S. E., Gorodkin, J., Martin, F., Herrera, C. & Benabdellah, K., 2024, In: Frontiers in Immunology. 15, 19 p., 1401683.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile4 Citations (Scopus)2 Downloads (Pure) -
Patent data-driven analysis of literature associations with changing innovation trends
Geissler, A. S., Gorodkin, J. & Seemann, S. E., 2024, In: Frontiers in Research Metrics and Analytics. 9, 8 p., 1432673.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile6 Downloads (Pure) -
Systematic analysis and characterization of long non-coding RNA genes in inflammatory bowel disease
Velissari, R., Ilieva, M., Dao, J., Miller, H. E., Madsen, J. H., Gorodkin, J., Aikawa, M., Ishii, H. & Uchida, S., 2024, In: Briefings in Functional Genomics. 23, 4, p. 395–405Research output: Contribution to journal › Journal article › Research › peer-review
2 Citations (Scopus) -
Alteration of microglial metabolism and inflammatory profile contributes to neurotoxicity in a hiPSC-derived microglia model of frontotemporal dementia 3
Haukedal, H., Syshøj Lorenzen, S., Westi, E. W., Corsi, G., Gadekar, V. P., McQuade, A., Davtyan, H., Doncheva, N. T., Schmid, B., Chandrasekaran, A., Seemann, E. S., Cirera, S., Blurton-Jones, M., Meyer, M., Gorodkin, J., Aldana, B. & Freude, K., 2023, In: Brain, Behavior, and Immunity. 113, p. 353-373Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile2 Citations (Scopus)71 Downloads (Pure)