Research output per year
Research output per year
Personal profile
Short presentation
Description of my research interests, activities and complete list of peer reviewed papers can be found at the home page for Center for non-coding RNA in Technology and Health: http://rth.dk and at the research group website: http://ivh.ku.dk/bioinformatics.
Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
Research output
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Clusters of mammalian conserved RNA structures in UTRs associate with RBP binding sites
Gadekar, V. P., Welford Munk, A., Miladi, M., Junge, A., Backofen, R., Seemann, S. E. & Gorodkin, J., 2024, In: NAR Genomics and Bioinformatics. 6, 3, 16 p., lqae089.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile8 Downloads (Pure) -
Patent data-driven analysis of literature associations with changing innovation trends
Geissler, A. S., Gorodkin, J. & Seemann, S. E., 2024, In: Frontiers in Research Metrics and Analytics. 9, 8 p., 1432673.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile4 Downloads (Pure) -
Systematic analysis and characterization of long non-coding RNA genes in inflammatory bowel disease
Velissari, R., Ilieva, M., Dao, J., Miller, H. E., Madsen, J. H., Gorodkin, J., Aikawa, M., Ishii, H. & Uchida, S., 2024, In: Briefings in Functional Genomics. 23, 4, p. 395–405Research output: Contribution to journal › Journal article › Research › peer-review
2 Citations (Scopus) -
Alteration of microglial metabolism and inflammatory profile contributes to neurotoxicity in a hiPSC-derived microglia model of frontotemporal dementia 3
Haukedal, H., Syshøj Lorenzen, S., Westi, E. W., Corsi, G., Gadekar, V. P., McQuade, A., Davtyan, H., Doncheva, N. T., Schmid, B., Chandrasekaran, A., Seemann, E. S., Cirera, S., Blurton-Jones, M., Meyer, M., Gorodkin, J., Aldana, B. & Freude, K., 2023, In: Brain, Behavior, and Immunity. 113, p. 353-373Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile2 Citations (Scopus)60 Downloads (Pure) -
CRISPRi screen for enhancing heterologous alpha-amylase yield in Bacillus subtilis
Geissler, A. S., Fehler, A. O., Poulsen, L. D., Gonzalez-Tortuero, E., Kallehauge, T. B., Alkan, F., Anthon, C., Seemann, S. E., Rasmussen, M. D., Breuener, A., Hjort, C., Vinther, J. & Gorodkin, J., 2023, In: Journal of Industrial Microbiology and Biotechnology. 50, 1, 16 p., kuac028.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile5 Citations (Scopus)47 Downloads (Pure) -
Cross-species high-resolution transcriptome profiling suggests biomarkers and therapeutic targets for ulcerative colitis
Yarani, R., Palasca, O., Doncheva, N. T., Anthon, C., Pilecki, B., Svane, C. A. S., Mirza, A. H., Litman, T., Holmskov, U., Bang-Berthelsen, C. H., Vilien, M., Jensen, L. J., Gorodkin, J. & Pociot, F., 2023, In: Frontiers in Molecular Biosciences. 9, 1081176.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile1 Citation (Scopus)35 Downloads (Pure) -
Golgi fragmentation: One of the earliest organelle phenotypes in Alzheimer's disease neurons
Haukedal, H., Corsi, G. I., Gadekar, V. P., Doncheva, N. T., Kedia, S., de Haan, N., Chandrasekaran, A., Jensen, P., Schiønning, P., Vallin, S., Marlet, F. R., Poon, A., Pires, C., Agha, F. K., Wandall, H. H., Cirera, S., Simonsen, A. H., Nielsen, T. T., Nielsen, J. E., Hyttel, P. & 7 others, , 2023, In: Frontiers in Neuroscience. 17, 17 p., 1120086.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile15 Citations (Scopus)49 Downloads (Pure) -
Letter to the editor: Testing on external independent datasets is necessary to corroborate machine learning model improvement
Corsi, G. I., Anthon, C. & Gorodkin, J., 2023, In: Bioinformatics. 39, 6, btad327.Research output: Contribution to journal › Letter › Research › peer-review
Open AccessFile17 Downloads (Pure)