Personal profile
Short presentation
Description of my research interests, activities and complete list of peer reviewed papers can be found at the home page for Center for non-coding RNA in Technology and Health: http://rth.dk and at the research group website: http://ivh.ku.dk/bioinformatics.
Collaborations and top research areas from the last five years
Research output
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Exploring the regulatory potential of RNA structures in 202 cyanobacterial genomes
Geissler, A. S., Carrasquer-Alvarez, E., Anthon, C., Frigaard, N.-U., Gorodkin, J. & Seemann, S. E., 2026, In: Nucleic Acids Research. 54, 4, 16 p., gkag081.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile5 Downloads (Pure) -
Very high CO2 concentrations inhibit photosynthesis and trigger transcriptomic stress responses in cyanobacteria
Geissler, A. S., Carrasquer-Alvarez, E., Gorodkin, J., Frigaard, N.-U. & Seemann, S. E., 2026, In: NAR Genomics and Bioinformatics. 8, 1, 14 p., lqaf207.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile1 Citation (Scopus)6 Downloads (Pure) -
An Overview and Comparative Analysis of CRISPR-SpCas9 gRNA Activity Prediction Tools
Yuan, H., Song, C., Xu, H., Sun, Y., Anthon, C., Bolund, L., Lin, L., Benabdellah, K., Lee, C., Hou, Y., Gorodkin, J. & Luo, Y., 2025, In: CRISPR Journal. 8, 2, p. 89-104 16 p.Research output: Contribution to journal › Review › peer-review
2 Citations (Scopus) -
Associating cancer-related RNA structure disrupting SNPs in LincRNAs to function
Han, X., Anthon, C., Geissler, A. S., Sabarinathan, R., Seemann, S. E., Havgaard, J. H. & Gorodkin, J., 2025, In: BMC Genomics. 26, 13 p., 1100.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile3 Downloads (Pure) -
Binding and Ligand Activation Driven Enrichment–Directed Evolution of SaCas9 gRNAs Improves Gene Editing Efficiency
Llanga, T., Bush, K., Sun, Y., Yan, A., Zhou, J., Gorodkin, J. & Sullenger, B. A., 2025, In: Nucleic Acid Therapeutics. 35, 5, p. 209-219Research output: Contribution to journal › Journal article › Research › peer-review
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Computational discovery of conserved RNA structures and functional characterization of a structured lncRNA in Leishmania braziliensis
Espada, C. R., Anthon, C., Magalhães, R. D. M., Junior, J. C. Q., Teles, N. M. M., Pais, F. S., Orsine, L. A., de Almeida, L., Defina, T. P. A., Dowle, A., Gorodkin, J., Walrad, P. B. & Cruz, A. K., 2025, In: Non-coding RNA Research. 14, p. 51-64Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile3 Citations (Scopus)11 Downloads (Pure) -
Deep learning models simultaneously trained on multiple datasets improve base-editing activity prediction
Sun, Y., Qu, K., Corsi, G. I., Anthon, C., Pan, X., Xiang, X., Jensen, L. J., Lin, L., Luo, Y. & Gorodkin, J., 2025, In: Nature Communications. 16, 9 p., 9821.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile4 Downloads (Pure) -
Extrachromosomal circular miRNA-gene amplifications contribute to the renal cancer phenotype
Han, P., Lv, W., Xu, Z., Yu, T., Gao, S., Xiang, X., Pan, X., Zeng, Y., Havgaard, J. H., Gorodkin, J., Liang, X., Wu, S., Tao, H., Sui, X., Wang, W., Dong, W., Yang, H., Lin, C. & Regenberg, B., 2025, In: Cell Reports. 44, 12, 19 p., 116660.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile1 Citation (Scopus)55 Downloads (Pure)