John Elmerdahl Olsen

Search results

• 2025

  Can infectious omphalitis in piglets be clinically diagnosed during the first three days of life?

  Blirup-Plum, S. A., Jensen, H. E., Hartmann, K. T., Nielsen, S. S., Pankoke, K., Hansen, M. S., Pedersen, K. S., Larsen, I., Nielsen, J. P., Olsen, J. E., Kudirkiene, E., Braunstein, T. H. & Barington, K., 2025, In: B M C Veterinary Research. 21, 12 p., 58.

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• Outer membrane proteins as vaccine targets against Lawsonia intracellularis in piglets

  Aves, K. L., Fresno, A. H., Nisar, S., Saraiva, M. M., Goecke, N. B., Sander, A. F., Nielsen, M. A., Olsen, J. E. & Guerra, P. R., 2025, In: Vaccines. 13, 2, 15 p., 207.

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• Selection of resistant coliform bacteria in the intestine of pigs following flock versus individual treatment with neomycin against post-weaning diarrhoae or amoxicillin against umbilical infection

  Kudirkiene, E., Eriksen, E. Ø., Liu, G., Christensen, A. E., Agerlin, M. V., Larsen, I., Weber, N. R., Pedersen, K. S., Nielsen, J. P. & Olsen, J. E., 2025, In: Letters in Applied Microbiology. 78, 2, 8 p., ovaf008.

  Research output: Contribution to journal › Journal article › Research › peer-review
• 2024

  Antimicrobial use and antimicrobial resistance in Escherichia coli in semi-intensive and free-range poultry farms in Uganda

  Mbatidde, I., Ndoboli, D., Ayebare, D., Muloi, D., Roesel, K., Ochieng, L., Dione, M., Tenhagen, B. A., Biryomumaisho, S., Wampande, E., Wieland, B., Olsen, J. E. & Moodley, A., 2024, In: One Health. 18, 7 p., 100762.

  Research output: Contribution to journal › Journal article › Research › peer-review

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• A sequencing-based method for quantifying gene-deletion mutants of bacteria in the intracellular environment

  Fei, X., Yuan, Z., Wellner, S. M., Ma, Y. & Olsen, J. E., 2024, In: Frontiers in Microbiology. 15, 12 p., 1487724.

  Research output: Contribution to journal › Journal article › Research › peer-review

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• Brief communication: Carrier rate, antimicrobial resistance and molecular typing of Staphylococcus aureus and Staphylococcus pseudintermedius in healthy dogs from Morogoro, Tanzania

  Katakweba, A. A. S., Iversen, C. M., Tsaxra, J. B., Muhairwa, A. P., Moodley, A. & Olsen, J. E., 2024, In: Veterinary Dermatology. 35, 5, p. 477-592

  Research output: Contribution to journal › Journal article › Research › peer-review

• Deletions of ttrA and pduA genes in Salmonella enterica affect survival within chicken-derived HD-11 macrophages

  Saraiva, M. M. S., Benevides, V. P., Guerra, P. R., Campos, I. C., Rodrigues Alves, L. B., Paiva, J. B., Muniz, L. M., Almeida, A. M., Freitas Neto, O. C., Olsen, J. E. & Berchieri Junior, A., 2024, In: Current Genetics. 70, 10 p., 14.

  Research output: Contribution to journal › Journal article › Research › peer-review
  2 Citations (Scopus)

• Diet composition drives tissue-specific intensity of murine enteric infections

  Israelson, H., Vedsted-Jakobsen, A., Zhu, L., Gagnaire, A., von Münchow, A., Polakovicova, N., Valente, A. H., Raza, A., Andersen-Civil, A. I. S., Olsen, J. E., Myhill, L. J., Geldhof, P. & Williams, A. R., 2024, In: mBio. 15, 2, 22 p., e0260323.

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• Enhancing the Efficacy of Chloramphenicol Therapy for Escherichia coli by Targeting the Secondary Resistome

  Alobaidallah, M. S. A., García, V., Wellner, S. M., Thomsen, L. E., Herrero-Fresno, A. & Olsen, J. E., 2024, In: Antibiotics. 13, 1, 14 p., 73.

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• Genome-wide identification of fitness-genes in aminoglycoside-resistant Escherichia coli during antibiotic stress

  Wellner, S. M., Alobaidallah, M. S. A., Fei, X., Herrero-Fresno, A. & Olsen, J. E., 2024, In: Scientific Reports. 14, 16 p., 4163.

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• Genomic Features and Phylogenetic Analysis of Antimicrobial-Resistant Salmonella Mbandaka ST413 Strains

  Benevides, V. P., Saraiva, M. M. S., Nascimento, C. F., Delgado-Suárez, E. J., Oliveira, C. J. B., Silva, S. R., Miranda, V. F. O., Christensen, H., Olsen, J. E. & Berchieri Junior, A., 2024, In: Microorganisms. 12, 2, 16 p., 312.

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• Identification of antibiotic induced persister cells in Streptococcus agalactiae

  Greve, N. B., Slotved, H-C., Olsen, J. E. & Thomsen, L. E., 2024, In: PLoS ONE. 19, 6, 13 p., e0303271.

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• Lack of correlation between growth, stress, and virulence phenotypes in strains of Salmonella enterica serovar Enteritidis, S. Typhimurium DT104, S. 4,12, b:- and S. Liverpool

  Olsen, J. E., Frees, D., Kyvsgaard, N. C. & Barco, L., 2024, In: Letters in Applied Microbiology. 77, 2, 9 p., ovae015.

  Research output: Contribution to journal › Journal article › Research › peer-review

• Occurrence of Salmonella enterica in faecal sludge from Nigeria and genetic relatedness with strains associated with human infections in Africa

  Jibril, A. H., Dalsgaard, A., Okeke, I. N., Ibrahim, A. M. & Olsen, J. E., 2024, In: Journal of Applied Microbiology. 135, 12, 8 p., lxae293.

  Research output: Contribution to journal › Journal article › Research › peer-review

• Phenotypic and Genotypic Characterization of Antimicrobial Resistance in Salmonella enterica Serovars from Colombian Pig Farms

  Chamorro-tobar, I. C., Pulido-villamarín, A., Carrascal-Camacho, A. K., Barrientos-Anzola, I., Wiesner, M., Hernández-Toro, I., Alban, L., Olsen, J. E., Dalsgaard, A. & Hounmanou, Y. M. G., 2024, In: Applied Microbiology. 4, 4, p. 1729-1744

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• Salmonella Gallinarum mgtC mutant shows a delayed fowl typhoid progression in chicken

  Rodrigues Alves, L. B., Freitas Neto, O. C. D., de Mesquita Souza Saraiva, M., do Monte, D. F. M., de Lima, B. N., Cabrera, J. M., de Oliveira Barbosa, F., Benevides, V. P., de Lima, T. S., Campos, I. C., da Silva Rubio, M., Nascimento, C. D. F., Arantes, L. C. R. V., Alves, V. V., de Almeida, A. M., Olsen, J. E. & Berchieri Junior, A., 2024, In: Gene. 892, 11 p., 147827.

  Research output: Contribution to journal › Journal article › Research › peer-review
  3 Citations (Scopus)
• 2023

  An observational field study of porcine post-weaning diarrhea: clinical and microbiological findings, and fecal pH-measurements as a potential diagnostic tool

  Eriksen, E. Ø., Kudirkiene, E., Barington, K., Goecke, N. B., Blirup-Plum, S. A., Nielsen, J. P., Olsen, J. E., Jensen, H. E., Pankoke, K., Larsen, L. E., Liu, G. & Pedersen, K. S., 2023, In: Porcine Health Management. 9, 33.

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• Assessing phenotypic virulence of Salmonella enterica across serovars and sources

  Petrin, S., Wijnands, L., Benincà, E., Mughini-Gras, L., Delfgou-van Asch, E. H. M., Villa, L., Orsini, M., Losasso, C., Olsen, J. E. & Barco, L., 2023, In: Frontiers in Microbiology. 14, 1184387.

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• A Virus-like Particle-Based F4 Enterotoxigenic Escherichia coli Vaccine Is Inhibited by Maternally Derived Antibodies in Piglets but Generates Robust Responses in Sows

  Aves, K. L., Guerra, P. R., Fresno, A. H., Saraiva, M. M. S., Cox, E., Bækbo, P. J., Nielsen, M. A., Sander, A. F. & Olsen, J. E., 2023, In: Pathogens. 12, 12, 19 p., 1388.

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  4 Citations (Scopus)

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• Bacteriostatic and Haemolytic Activities of Extracts and Compounds of Commiphora swynnertonii

  Msengwa, Z., Credo, D., Mafuru, M., Mwesongo, J., Mabiki, F. P., Mwang’onde, B. J., Mtambo, M. M., Kusiluka, L. J., Mdegela, R. H. & Olsen, J. E., 2023, In: Research Journal of Pharmacognosy. 10, 2, p. 47-56 10 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

• Effect of feeding dairy calves with milk fermented with selected probiotic strains on occurrence of diarrhoea, carriage of pathogenic and zoonotic microorganisms and growth performance

  Fresno, A. H., Alencar, A. L. F., Liu, G., Wridt, M. W., Andersen, F. B., Pedersen, H. S., Martin, H. L., Nielsen, S. S., Aabo, S., Olsen, J. E. & Jensen, A. N., 2023, In: Veterinary Microbiology. 286, 9 p., 109885.

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• Epifriedelanol is the key compound to antibacterial effects of extracts of Synadenium glaucescens (Pax) against medically important bacteria

  Msengwa, S. Z., Rwegoshora, F., David, C., Mwesongo, J., Mafuru, M., Mabiki, F. P., Mwang’onde, B. J., Mtambo, M. M., Kusiluka, L. J. M., Mdegela, R. H. & Olsen, J. E., 2023, In: Frontiers in Tropical Diseases. 3, 1104543.

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• Estimating potential farm economic benefits of advanced microbiological diagnostics in veterinary medicine

  Jensen, J. D., Christensen, T., Pansri, P. & Olsen, J. E., 2023, In: Animal Production Science. 63, 15, p. 1545-1558

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• Gastro-intestinal lesions are not relatable to diarrhoea or specific pathogens in post-weaning diarrhoea (PWD) in pigs

  Blirup-Plum, S. A., Jensen, H. E., Nielsen, S. S., Pankoke, K., Hansen, M. S., Pedersen, K. S., Eriksen, E. Ø., Nielsen, J. P., Olsen, J. E., Kudirkiene, E., Larsen, L. E., Goecke, N. B. & Barington, K., 2023, In: Acta Veterinaria Scandinavica. 65, p. 1-18 18 p., 30.

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  4 Citations (Scopus)

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• Genomics, biofilm formation and infection of bladder epithelial cells in potentially uropathogenic Escherichia coli (UPEC) from animal sources and human urinary tract infections (UTIs) further support food-borne transmission

  García, V., Lestón, L., Parga, A., García-Meniño, I., Fernández, J., Otero, A., Olsen, J. E., Herrero-Fresno, A. & Mora, A., 2023, In: One Health. 16, 100558.

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  8 Citations (Scopus)

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• Identification of Salmonella Pullorum Factors Affecting Immune Reaction in Macrophages from the Avian Host

  Fei, X., Li, Q., Jiao, X. & Olsen, J. E., 2023, In: Microbiology Spectrum. 11, 3, e00786-23.

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• Incidence and Genomic Background of Antibiotic Resistance in Food-Borne and Clinical Isolates of Salmonella enterica Serovar Derby from Spain

  Vázquez, X., García-Fierro, R., Fernández, J., Bances, M., Herrero-Fresno, A., Olsen, J. E., Rodicio, R., Ladero, V., García, V. & Rodicio, M. R., 2023, In: Antibiotics. 12, 7, 1204.

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• Lesions and pathogens found in pigs that died during the nursery period in five Danish farms

  Barington, K., Eriksen, E. Ø., Kudirkiene, E., Pankoke, K., Hartmann, K. T., Hansen, M. S., Jensen, H. E., Blirup-Plum, S. A., Jørgensen, B. M., Nielsen, J. P., Olsen, J. E., Goecke, N. B., Larsen, L. E. & Pedersen, K. S., 2023, In: Porcine Health Management. 9, 26.

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• Phenotypic and genotypic antimicrobial resistance correlation and plasmid characterization in Salmonella spp. isolates from Italy reveal high heterogeneity among serovars

  Petrin, S., Orsini, M., Massaro, A., Olsen, J. E., Barco, L. & Losasso, C., 2023, In: Frontiers in Public Health. 11, 13 p., 1221351.

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• Prevalence and whole genome phylogenetic analysis reveal genetic relatedness between antibiotic resistance Salmonella in hatchlings and older chickens from farms in Nigeria

  Jibril, A. H., Okeke, I. N., Dalsgaard, A. & Olsen, J. E., 2023, In: Poultry Science. 102, 3, 102427.

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• Salmonella Non-typhoidal

  Mølbak, K., Kirk, M., Olsen, J. E. & Besser, J., 1 Jan 2023, Encyclopedia of Food Safety, Second Edition, Volume 1-4. Elsevier, Vol. 1-4. p. V2-252-V2-275

  Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

• SKIN ULCERATIONS IN DANISH NURSERY PIGS

  Barington, K., Pankoke, K., Hartmann, K. T., Hansen, M. S., Jensen, H. E., Blirup-Plum, S. A., Jørgensen, B. M., Nielsen, J. P., Eriksen, E. Ø., Kudirkiene, E., Olsen, J. E. & Pedersen, K. S., 30 Aug 2023.

  Research output: Contribution to conference › Conference abstract for conference › Communication

• The global transcriptomes of Salmonella enterica serovars Gallinarum, Dublin and Enteritidis in the avian host

  Fei, X., Schroll, C., Huang, K., Christensen, J. P., Christensen, H., Lemire, S., Kilstrup, M., Thomsen, L. E., Jelsbak, L. & Olsen, J. E., 2023, In: Microbial Pathogenesis. 182, 106236.

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• Uncovering the Important Genetic Factors for Growth during Cefotaxime-Gentamicin Combination Treatment in bla_CTX-M-1 Encoding Escherichia coli

  Alobaidallah, M. S. A., García, V., De Mets, R., Wellner, S. M., Thomsen, L. E., Herrero-Fresno, A. & Olsen, J. E., 2023, In: Antibiotics. 12, 6, 24 p., 993.

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• Whole strains vs MGEs in short and longterm transmission of ESBL genes between healthcare and community settings in Uganda

  Hounmanou, Y. M. G., Wanyana, A., Alafi, S., Wabwire-mangen, F., Christensen, H., Olsen, J. E. & Byarugaba, D. K., 2023, In: Scientific Reports. 13, 10229.

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• 2022

  ANTIBACTERIAL EFFECTS OF SINGLE AND COMBINED CRUDE EXTRACTS OF SYNADENIUM GLAUCESCENS AND COMMIPHORA SWYNNERTONII

  Ochollah, G. M., Msengwa, S. Z., Mabiki, P. F., Kusiluka, J. M. L., Mdegela, H. R. & Olsen, E. J., 2022, In: African Journal of Infectious Diseases. 16, 2, p. 9-16 8 p.

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• Antimicrobial-induced horizontal transfer of antimicrobial resistance genes in bacteria: a mini-review

  Liu, G., Thomsen, L. E. & Olsen, J. E., 2022, In: The Journal of antimicrobial chemotherapy. 77, 3, p. 556-567 12 p.

  Research output: Contribution to journal › Review › peer-review
  48 Citations (Scopus)

• Effect of pH and Salinity on the Ability of Salmonella Serotypes to Form Biofilm

  Petrin, S., Mancin, M., Losasso, C., Deotto, S., Olsen, J. E. & Barco, L., 2022, In: Frontiers in Microbiology. 13, 821679.

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• Evaluation of a novel multiplex qPCR method for rapid detection and quantification of pathogens associated with calf diarrhoea

  Pansri, P., Svensmark, B., Liu, G., Thamsborg, S. M., Kudirkiene, E., Nielsen, H. V., Goecke, N. B. & Olsen, J. E., 2022, In: Journal of Applied Microbiology. 133, 4, p. 2516-2527

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• Garlic-Derived Metabolites Exert Antioxidant Activity, Modulate Gut Microbiota Composition and Limit Citrobacter rodentium Infection in Mice

  Zhu, L., Andersen-Civil, A. I. S., Castro-Meija, J. L., Nielsen, D. S., Blanchard, A., Olsen, J. E., Thamsborg, S. M. & Williams, A. R., 2022, In: Antioxidants. 11, 10, 14 p., 2033.

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• Genome-wide analysis of fitness factors in uropathogenic Escherichia coli in a pig urinary tract infection model

  García, V., Stærk, K., Alobaidallah, M. S. A., Grønnemose, R. B., Guerra, P. R., Andersen, T. E., Olsen, J. E. & Herrero-Fresno, A., 2022, In: Microbiological Research. 265, p. 127202 1 p.

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• GENOMIC CHARACTERIZATION OF MULTIDRUG-RESISTANT EXTENDED-SPECTRUM β-LACTAMASE-PRODUCING ESCHERICHIA COLI AND KLEBSIELLA PNEUMONIAE FROM CHIMPANZEES (PAN TROGLODYTES) FROM WILD AND SANCTUARY LOCATIONS IN UGANDA

  Bager, S. L., Kakaala, I., Kudirkiene, E., Byarugaba, D. K. & Olsen, J. E., 2022, In: Journal of Wildlife Diseases. 58, 2, p. 269-278 10 p.

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• Inhibition of Virulence Gene Expression in Salmonella Dublin, Escherichia coli F5 and Clostridium perfringens Associated With Neonatal Calf Diarrhea by Factors Produced by Lactic Acid Bacteria During Fermentation of Cow Milk

  Liu, G., Kragh, M. L., Aabo, S., Jensen, A. N. & Olsen, J. E., 2022, In: Frontiers in Microbiology. 13, 828013.

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• Prediction of Pasteurella multocida serotypes based on whole genomic sequences

  Christensen, H., Sajid, S. M., Bisgaard, M., Magistrali, C. F., Massacci, F. R., Liman, M., Menke, T., Bischoff, H. & Olsen, J. E., 2022, In: Veterinary Microbiology. 271, 109492.

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• Proteomes of Uropathogenic Escherichia coli Growing in Human Urine and in J82 Urinary Bladder Cells

  Andersen, S., Nawrocki, A., Johansen, A. E., Herrero-Fresno, A., Menéndez, V. G., Møller-Jensen, J. & Olsen, J. E., 2022, In: Proteomes. 10, 2, 15.

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• Recommendations on diagnostic investigations of post-weaning diarrhea outbreaks: assessing the prevalence of diarrhea and determining microbiological etiologies

  Eriksen, E. Ø., Nielsen, J. P., Kudirkiene, E., Olsen, J. E., Goecke, N. B., Larsen, L., Liu, G., Agerlin, M. V., Christensen, A. E. & Pedersen, K. S., 2022.

  Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

• Whole Genome Sequencing (WGS) Analysis of Virulence and AMR Genes in Extended-Spectrum β-Lactamase (ESBL)-Producing Escherichia coli from Animal and Environmental Samples in Four Italian Swine Farms

  Bonvegna, M., Tomassone, L., Christensen, H. & Olsen, J. E., 2022, In: Antibiotics. 11, 12, 1774.

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• “Omics” Technologies - What Have They Told Us About Uropathogenic Escherichia coli Fitness and Virulence During Urinary Tract Infection?

  Torres-Puig, S., García, V., Stærk, K., Andersen, T. E., Møller-Jensen, J., Olsen, J. E. & Herrero-Fresno, A., 2022, In: Frontiers in Cellular and Infection Microbiology. 12, 824039.

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• 2021

  Association between antimicrobial usage and resistance in Salmonella from poultry farms in Nigeria

  Jibril, A. H., Okeke, I. N., Dalsgaard, A. & Olsen, J. E., 2021, In: BMC Veterinary Research. 17, 234.

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• Co-occurrence of antimicrobial and metal resistance genes in pig feces and agricultural fields fertilized with slurry

  Peng, S., Zheng, H., Herrero-Fresno, A., Olsen, J. E., Dalsgaard, A. & Ding, Z., 2021, In: Science of the Total Environment. 792, 148259.

  Research output: Contribution to journal › Journal article › Research › peer-review
  27 Citations (Scopus)