Jonas Stenløkke Madsen

Search results

• 2024

  Flagellar interference with plasmid uptake in biofilms: a joint experimental and modeling study

  Røder, H. L., Christidi, E., Amador, C. I., Music, S., Olesen, A. K., Svensson, B., Madsen, J. S., Herschend, J., Kreft, J.-U. & Burmølle, M., 2024, In: Applied and Environmental Microbiology. 90, 1, 15 p., e01510-23.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

• Horizontal transmission of a multidrug-resistant IncN plasmid isolated from urban wastewater

  Yu, Z., Wang, Q., Pinilla-Redondo, R., Madsen, J. S., Clasen, K. A. D., Ananbeh, H., Olesen, A. K., Gong, Z., Yang, N., Dechesne, A., Smets, B., Nesme, J. & Sørensen, S. J., 2024, In: Ecotoxicology and Environmental Safety. 271, 12 p., 115971.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  32 Downloads (Pure)

• Insights into the circular: The cryptic plasmidome and its derived antibiotic resistome in the urban water systems

  Yu, Z., He, W., Klincke, F., Madsen, J. S., Kot, W., Hansen, L. H., Quintela-Baluja, M., Balboa, S., Dechesne, A., Smets, B., Nesme, J. & Sørensen, S. J., 2024, In: Environment International. 183, 12 p., 108351.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  4 Citations (Scopus)

  37 Downloads (Pure)

• Interphylum dissemination of NDM-5-positive plasmids in hospital wastewater from Fuzhou, China: a single-centre, culture-independent, plasmid transmission study

  Yang, Q. E., Ma, X., Zeng, L., Wang, Q., Li, M., Teng, L., He, M., Liu, C., Zhao, M., Wang, M., Hui, D., Madsen, J. S., Liao, H., Walsh, T. R. & Zhou, S., 2024, In: The Lancet Microbe. 5, 1, p. e13-e23 11 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  28 Citations (Scopus)

  22 Downloads (Pure)

• L-asparaginase-driven antibiosis in Pseudomonas fluorescens EK007: A promising biocontrol strategy against fire blight

  Habibi, R., Zibaee, I., Talebi, R., Behravan, J., Tarighi, S., Brejnrod, A., Kjøller, A. H., Sørensen, S. J. & Madsen, J. S., 2024, In: International Journal of Biological Macromolecules. 281, Part 2, 11 p., 136402.

  Research output: Contribution to journal › Journal article › Research › peer-review

• Single-cell RNA sequencing reveals plasmid constrains bacterial population heterogeneity and identifies a non-conjugating subpopulation

  Cyriaque, V., Ibarra-Chávez, R., Kuchina, A., Seelig, G., Nesme, J. & Madsen, J. S., 2024, In: Nature Communications. 15, 1, 10 p., 5853.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  2 Citations (Scopus)

  6 Downloads (Pure)

• Type IV-A3 CRISPR-Cas systems drive inter-plasmid conflicts by acquiring spacers in trans

  Benz, F., Camara-Wilpert, S., Russel, J., Wandera, K. G., Čepaitė, R., Ares-Arroyo, M., Gomes-Filho, J. V., Englert, F., Kuehn, J. A., Gloor, S., Mestre, M. R., Cuénod, A., Aguilà-Sans, M., Maccario, L., Egli, A., Randau, L., Pausch, P., Rocha, E. P. C., Beisel, C. L. & Madsen, J. S. & 4 others, Bikard, D., Hall, A. R., Sørensen, S. J. & Pinilla-Redondo, R., 2024, In: Cell Host and Microbe. 32, 6, p. 875-886.e9 12 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  13 Citations (Scopus)
• 2023

  Associational Resistance to Predation by Protists in a Mixed Species Biofilm

  Goh, Y. F., Røder, H. L., Chan, S. H., Ismail, M. H., Madsen, J. S., Lee, K. W. K., Sørensen, S. J., Givskov, M., Burmølle, M., Rice, S. A. & McDougald, D., 2023, In: Applied and Environmental Microbiology. 89, 2, 16 p., e0174122.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  6 Citations (Scopus)

  72 Downloads (Pure)

• Bacteriophages suppress CRISPR–Cas immunity using RNA-based anti-CRISPRs

  Camara-Wilpert, S., Mayo-Muñoz, D., Russel, J., Fagerlund, R. D., Madsen, J. S., Fineran, P. C., Sørensen, S. J. & Pinilla-Redondo, R., 2023, In: Nature. 623, 7987, p. 601-607 7 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  31 Citations (Scopus)

  29 Downloads (Pure)

• Conjugative plasmids inhibit extracellular electron transfer in Geobacter sulfurreducens

  Fessler, M., Madsen, J. S. & Zhang, Y., 2023, In: Frontiers in Microbiology. 14, 12 p., 1150091.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  3 Citations (Scopus)

  20 Downloads (Pure)

• Cooperative antibiotic resistance facilitates horizontal gene transfer

  Wang, Q., Wei, S., Silva, A. F. & Madsen, J. S., 2023, In: ISME Journal. 17, 9 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  16 Citations (Scopus)

  34 Downloads (Pure)
• 2022

  An easily modifiable conjugative plasmid for studying horizontal gene transfer

  Wang, Q., Olesen, A. K., Maccario, L. & Madsen, J. S., 2022, In: Plasmid. 123-124, 10 p., 102649.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  3 Citations (Scopus)

  49 Downloads (Pure)

• CRISPR-Cas systems are widespread accessory elements across bacterial and archaeal plasmids

  Pinilla-Redondo, R., Russel, J., Mayo-Muñoz, D., Shah, S. A., Garrett, R. A., Nesme, J., Madsen, J. S., Fineran, P. C. & Sørensen, S. J., 2022, In: Nucleic Acids Research. 50, 8, p. 4315-4328

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  56 Citations (Scopus)

  72 Downloads (Pure)

• IncHI1A plasmids potentially facilitate horizontal flow of antibiotic resistance genes to pathogens in microbial communities of urban residential sewage

  Olesen, A. K., Pinilla-Redondo, R., Hansen, M. F., Russel, J., Dechesne, A., Smets, B. F., Madsen, J. S., Nesme, J. & Sørensen, S. J., 2022, In: Molecular Ecology. 31, 5, p. 1595-1608

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  13 Citations (Scopus)

  46 Downloads (Pure)

• Microbial Interactions in Electroactive Biofilms for Environmental Engineering Applications: A Role for Nonexoelectrogens

  Fessler, M., Madsen, J. S. & Zhang, Y., 2022, In: Environmental Science & Technology. 56, 22, p. 15273-15279 7 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  32 Citations (Scopus)

  10 Downloads (Pure)

• Unexpected diversity among small-scale sample replicates of defined plant root compartments

  Attia, S., Russel, J., Mortensen, M. S., Madsen, J. S. & Sørensen, S. J., 2022, In: ISME Journal. 16, 4, p. 997-1003 7 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  35 Citations (Scopus)

  28 Downloads (Pure)
• 2021

  Biofilms can act as plasmid reserves in the absence of plasmid specific selection

  Røder, H. L., Trivedi, U., Russel, J., Kragh, K. N., Herschend, J., Thalsø-Madsen, I., Tolker-Nielsen, T., Bjarnsholt, T., Burmølle, M. & Madsen, J. S., 2021, In: npj Biofilms and Microbiomes. 7, 6 p., 78.

  Research output: Contribution to journal › Letter › peer-review

  Open Access

  File
  18 Citations (Scopus)

  82 Downloads (Pure)

• Kin discrimination promotes horizontal gene transfer between unrelated strains in Bacillus subtilis

  Stefanic, P., Belcijan, K., Kraigher, B., Kostanjšek, R., Nesme, J., Madsen, J. S., Kovac, J., Sørensen, S. J., Vos, M. & Mandic-Mulec, I., 2021, In: Nature Communications. 12, 11 p., 3457.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  20 Citations (Scopus)

  38 Downloads (Pure)

• Lead Drives Complex Dynamics of a Conjugative Plasmid in a Bacterial Community

  Cyriaque, V., Madsen, J. S., Fievez, L., Leroy, B., Hansen, L. H., Bureau, F., Sørensen, S. J. & Wattiez, R., 2021, In: Frontiers in Microbiology. 12, 14 p., 655903.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  4 Citations (Scopus)

  36 Downloads (Pure)
• 2020

  Community-intrinsic properties enhance keratin degradation from bacterial consortia

  Nasipuri, P., Herschend, J., Brejnrod, A. D., Madsen, J. S., Espersen, R., Svensson, B., Burmølle, M., Jacquiod, S. & Sørensen, S. J., 2020, In: PLoS ONE. 15, 1, 26 p., e0228108.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  24 Citations (Scopus)

  80 Downloads (Pure)

• Horizontal Transfer of Cyclic di-GMP Associated Genes: Theoretical Underpinnings and Future Perspectives

  Madsen, J. S., 2020, Microbial Cyclic Di-Nucleotide Signaling. Chou, S.-H., Guiliani, N., Lee, V. T. & Römling, U. (eds.). Springer, p. 641-652 12 p.

  Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
  1 Citation (Scopus)

• Persistence and progression of staphylococcal infection in the presence of public goods

  Trivedi, U., Fell, C., Madsen, J. S., Everett, J., Burmølle, M., Rumbaugh, K. P. & Sørensen, S. J., 2020, In: npj Biofilms and Microbiomes. 6, 5 p., 55.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  1 Citation (Scopus)

  37 Downloads (Pure)

• Plasmids persist in a microbial community by providing fitness benefit to multiple phylotypes

  Li, L., Dechesne, A., Madsen, J. S., Nesme, J., Sørensen, S. J. & Smets, B. F., 2020, In: I S M E Journal. 14, 5, p. 1170-1181 12 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  67 Citations (Scopus)
• 2019

  Fate of CMY-2-Encoding Plasmids Introduced into the Human Fecal Microbiota by Exogenous Escherichia coli

  Anjum, M., Madsen, J. S., Nesme, J., Jana, B., Wiese, M., Jasinskyte, D., Nielsen, D. S., Sørensen, S. J., Dalsgaard, A., Moodley, A., Bortolaia, V. & Guardabassi, L., 2019, In: Antimicrobial Agents and Chemotherapy. 63, 5, 13 p., e02528-18.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access
  20 Citations (Scopus)

• Fluidic resistance control enables high-throughput establishment of mixed-species biofilms

  Hansen, M. F., Meyer Torp, A., Madsen, J. S., Røder, H. L. & Burmølle, M., 2019, In: BioTechniques. 66, 5, p. 235-239

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  6 Citations (Scopus)

  143 Downloads (Pure)

• Interspecies interactions reduce selection for a biofilm-optimized variant in a four-species biofilm model

  Røder, H. L., Liu, W., Sørensen, S. J., Madsen, J. S. & Burmølle, M., 2019, In: Environmental Microbiology Reports. 11, 6, p. 835-839 5 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  11 Citations (Scopus)

• Priority of Early Colonizers but No Effect on Cohabitants in a Synergistic Biofilm Community

  Olsen, N. M. C., Røder, H. L., Russel, J., Madsen, J. S., Sørensen, S. J. & Burmølle, M., 2019, In: Frontiers in Microbiology. 10, 8 p., 1949.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  15 Citations (Scopus)

  119 Downloads (Pure)
• 2018

  A culture-independent method for studying transfer of IncI1 plasmids from wild-type Escherichia coli in complex microbial communities

  Anjum, M., Madsen, J. S., Espinosa-Gongora, C., Jana, B., Wiese, M., Nielsen, D. S., Sørensen, S. J., Moodley, A., Bortolaia, V. & Guardabassi, L., Sept 2018, In: Journal of Microbiological Methods. 152, p. 18-26 9 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  7 Citations (Scopus)

• An intriguing relationship between the cyclic diguanylate signaling system and horizontal gene transfer

  Madsen, J. S., Hylling, O., Jacquiod, S. J. A., Pécastaings, S., Hansen, L. H., Riber, L., Vestergaard, G. A. & Sørensen, S. J., 1 Sept 2018, In: ISME Journal. 12, 9, p. 2330-2334 5 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  19 Citations (Scopus)

• Bacterial social interactions and the emergence of community-intrinsic properties

  Madsen, J. S., Sørensen, S. J. & Burmølle, M., Apr 2018, In: Current Opinion in Microbiology. 42, p. 104-109 6 p.

  Research output: Contribution to journal › Review › peer-review
  67 Citations (Scopus)

• Enhanced bacterial mutualism through an evolved biofilm phenotype

  Røder, H. L., Herschend, J., Russel, J., Andersen, M. F., Madsen, J. S., Sørensen, S. J. & Burmølle, M., 1 Nov 2018, In: I S M E Journal. 12, p. 2608-2618 11 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access
  35 Citations (Scopus)

• Estimating the Transfer Range of Plasmids Encoding Antimicrobial Resistance in a Wastewater Treatment Plant Microbial Community

  Li, L., Dechesne, A., He, Z., Madsen, J. S., Nesme, J., Sørensen, S. J. & Smets, B. F., 8 May 2018, In: Environmental Science & Technology Letters. 5, 5, p. 260-265 6 p.

  Research output: Contribution to journal › Letter › peer-review
  97 Citations (Scopus)

• Micro-scale intermixing: a requisite for stable and synergistic co-establishment in a four-species biofilm

  Liu, W., Russel, J., Burmølle, M., Sørensen, S. J. & Madsen, J. S., 1 Aug 2018, In: I S M E Journal. 12, p. 1940-1951 12 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access
  37 Citations (Scopus)

• Staphylococcus aureus coagulases are exploitable yet stable public goods in clinically relevant conditions

  Trivedi, U., Madsen, J. S., Everett, J., Fell, C., Russel, J., Haaber, J., Crosby, H. A., Horswill, A. R., Burmølle, M., Rumbaugh, K. P. & Sørensen, S. J., 11 Dec 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 50, p. E11771-E11779

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access
  15 Citations (Scopus)
• 2017

  Antagonism correlates with metabolic similarity in diverse bacteria

  Russel, J., Røder, H. L., Madsen, J. S., Burmølle, M. & Sørensen, S. J., 3 Oct 2017, In: Proceedings of the National Academy of Science of the United States of America. 114, 40, p. 10684-10688 5 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access
  117 Citations (Scopus)

• A post-planktonic era of in vitro infectious models: issues and changes addressed by a clinically relevant wound like media

  Trivedi, U., Madsen, J. S., Rumbaugh, K. P., Wolcott, R. D., Burmølle, M. & Sørensen, S. J., 2017, In: Critical Reviews in Microbiology. 43, 4, p. 453-465 12 p.

  Research output: Contribution to journal › Review › peer-review
  19 Citations (Scopus)

• Low-abundant species facilitates specific spatial organization that promotes multispecies biofilm formation

  Liu, W., Russel, J., Røder, H. L., Madsen, J. S., Burmølle, M. & Sørensen, S. J., 2017, In: Environmental Microbiology. 19, 7, p. 2893-2905 13 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  56 Citations (Scopus)

• Whole-genome sequence of Pseudomonas fluorescens EK007-RG4, a promising biocontrol agent against a broad range of bacteria, including the fire blight bacterium Erwinia amylovora

  Habibi, R., Tarighi, S., Behravan, J., Taheri, P., Kjøller, A. H., Brejnrod, A. D., Madsen, J. S. & Sørensen, S. J., 2017, In: Genome Announcements. 5, 13, 2 p., e00026-17.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  3 Citations (Scopus)

  321 Downloads (Pure)
• 2016

  Coexistence facilitates interspecific biofilm formation in complex microbial communities

  Madsen, J. S., Røder, H. L., Russel, J., Sørensen, H., Burmølle, M. & Sørensen, S. J., 2016, In: Environmental Microbiology. 18, 8, p. 2565–2574

  Research output: Contribution to journal › Journal article › Research › peer-review
  99 Citations (Scopus)

• Interspecific bacterial interactions are reflected in multispecies biofilm spatial organization

  Liu, W., Røder, H. L., Madsen, J. S., Bjarnsholt, T., Sørensen, S. J. & Burmølle, M., 2016, In: Frontiers in Microbiology. 7, 8 p., 1366.

  Research output: Contribution to journal › Review › peer-review

  Open Access

  File
  147 Citations (Scopus)

  435 Downloads (Pure)

• Type 3 fimbriae encoded on plasmids are expressed from a unique promoter without affecting host motility, facilitating an exceptional phenotype that enhances conjugal plasmid transfer

  Madsen, J. S., Riber, L., Kot, W. P., Basfeld, A., Burmølle, M., Hansen, L. H. & Sørensen, S. J., 2016, In: P L o S One. 11, 9, 19 p., e0162390.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  16 Citations (Scopus)

  316 Downloads (Pure)
• 2015

  Facultative control of matrix production optimizes competitive fitness in Pseudomonas aeruginosa PA14 biofilm models

  Madsen, J. S., Lin, Y. C., Squyres, G. R., Price-Whelan, A., Torio, A. D. S., Song, A., Cornell, W. C., Sørensen, S. J., Xavier, J. B. & Dietrich, L. E. P., 2015, In: Applied and Environmental Microbiology. 81, 24, p. 8414-8426 13 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  56 Citations (Scopus)

• High prevalence of biofilm synergy among bacterial soil isolates in cocultures indicates bacterial interspecific cooperation

  Ren, D., Madsen, J. S., Sørensen, S. J. & Burmølle, M., 11 Jan 2015, In: ISME Journal. 9, p. 81-89 9 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  235 Citations (Scopus)

• Presence of Pathogenic bacteria and viruses in the daycare environment

  Ibfelt, T., Engelund, E. H., Permin, A., Madsen, J. S., Schultz, A. C. & Andersen, L. P., 2015, In: Journal of Environmental Health. 78, 3, p. 24-29 6 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  12 Citations (Scopus)
• 2014

  High-throughput screening of multispecies biofilm formation and quantitative PCR-based assessment of individual species proportions, useful for exploring interspecific bacterial interactions

  Ren, D., Madsen, J. S., de la Cruz Perera, C. I., Bergmark, L., Sørensen, S. J. & Burmølle, M., 2014, In: Microbial Ecology. 68, 1, p. 146-154 9 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  84 Citations (Scopus)

• Sociomicrobiology: Bacterial Interactions and Biofilm Formation

  Madsen, J. S., 2014, Department of Biology, Faculty of Science, University of Copenhagen. 165 p.

  Research output: Book/Report › Ph.D. thesis

  File
• 2013

  A spatiotemporal view of plasmid loss in biofilms and planktonic cultures: [plus] Erratum

  Madsen, J. S., Burmølle, M. & Sørensen, S. J., 2013, In: Biotechnology and Bioengineering (Print). 110, 12, p. 3071-3074 4 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  8 Citations (Scopus)
• 2012

  The interconnection between biofilm formation and horizontal gene transfer

  Madsen, J. S., Burmølle, M., Hansen, L. H. & Sørensen, S. J., 2012, In: F E M S Immunology and Medical Microbiology. 65, 2, p. 183-195 13 p.

  Research output: Contribution to journal › Review › peer-review
  498 Citations (Scopus)

• When it makes sense to socialize whilst being on the move: A small EAL-domain containing protein, encoded on natural biofilm-promoting plasmids, triggers motility

  Madsen, J. S., Riber, L., Burmølle, M., Hansen, L. H. & Sørensen, S. J., 2012.

  Research output: Contribution to conference › Poster › Research
• 2011

  Characterization of pIC13_78, a biofilm enabling plasmid

  Madsen, J. S., Norman, A., Burmølle, M., Hansen, L. H. & Sørensen, S. J., 2011.

  Research output: Contribution to conference › Poster › Research