Juan Antonio Rodríguez

Research output

Research output per year 2014 2014 2016 2017 2018 2021 2024

• 766 Citations
• 14 Journal article
• 1 Book chapter
• 1 Comment/debate
• 1 Letter
• 2 More
  • 1 Review
  • 1 Preprint

Research output per year

Research output per year

Search results

• 2024

  Three-dimensional genome architecture persists in a 52,000-year-old woolly mammoth skin sample

  Sandoval-Velasco, M., Dudchenko, O., Rodríguez, J. A., Estrada, C. P., Dehasque, M., Fontsere, C., Mak, S. S. T., Khan, R., Contessoto, V. G., Oliveira Junior, A. B., Kalluchi, A., Herrera, B. J. Z., Jeong, J., Roy, R. P., Christopher, I., Weisz, D., Omer, A. D., Batra, S. S., Shamim, M. S., Durand, N. C. & 36 others, O'Connell, B., Roca, A. L., Plikus, M. V., Kusliy, M. A., Romanenko, S. A., Lemskaya, N. A., Serdyukova, N. A., Modina, S. A., Perelman, P. L., Kizilova, E. A., Baiborodin, S. I., Rubtsov, N. B., Machol, G., Rath, K., Mahajan, R., Kaur, P., Gnirke, A., Garcia-Treviño, I., Coke, R., Flanagan, J. P., Pletch, K., Ruiz-Herrera, A., Plotnikov, V., Pavlov, I. S., Pavlova, N. I., Protopopov, A. V., Di Pierro, M., Graphodatsky, A. S., Lander, E. S., Rowley, M. J., Wolynes, P. G., Onuchic, J. N., Dalén, L., Marti-Renom, M. A., Gilbert, M. T. P. & Aiden, E. L., 2024, In: Cell. 187, 14, p. 3541-3562.e51 74 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  2 Citations (Scopus)
• 2022

  Sex-determining 3D regulatory hubs revealed by genome spatial auto-correlation analysis

  Mota-Gómez, I., Rodríguez Pérez, J. A., Dupont, S., Lao, O., Jedamzick, J., Kuhn, R., Lacadie, S., García-Moreno, S. A., Hurtado, A., Acemel, R. D., Capel, B., Marti-Renom, M. A. & Lupianez, D. G., 2022, bioRxiv, 43 p.

  Research output: Working paper › Preprint › Research

  File
  8 Downloads (Pure)
• 2021

  A multilayered post-GWAS assessment on genetic susceptibility to pancreatic cancer

  López de Maturana, E., Rodríguez, J. A., Alonso, L., Lao, O., Molina-Montes, E., Martín-Antoniano, I. A., Gómez-Rubio, P., Lawlor, R., Carrato, A., Hidalgo, M., Iglesias, M., Molero, X., Löhr, M., Michalski, C., Perea, J., O’Rorke, M., Barberà, V. M., Tardón, A., Farré, A., Muñoz-Bellvís, L. & 32 others, Crnogorac-Jurcevic, T., Domínguez-Muñoz, E., Gress, T., Greenhalf, W., Sharp, L., Arnes, L., Cecchini, L., Balsells, J., Costello, E., Ilzarbe, L., Kleeff, J., Kong, B., Márquez, M., Mora, J., O’Driscoll, D., Scarpa, A., Ye, W., Yu, J., García-Closas, M., Kogevinas, M., Rothman, N., Silverman, D. T., Albanes, D., Arslan, A. A., Beane-Freeman, L., Bracci, P. M., Brennan, P., Bueno-de-Mesquita, B., Buring, J., Canzian, F., PanGenEU Investigators & SBC/EPICURO Investigators, 2021, In: Genome Medicine. 13, 1, 18 p., 15.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  17 Citations (Scopus)

  26 Downloads (Pure)

• DeepCOMBI: explainable artificial intelligence for the analysis and discovery in genome-wide association studies

  Mieth, B., Rozier, A., Rodriguez, J. A., Höhne, M. M. C., Görnitz, N. & Müller, K-R., 2021, In: NAR Genomics and Bioinformatics. 3, 3, 21 p., lqab065.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  23 Citations (Scopus)

  7 Downloads (Pure)

• STAG2 loss-of-function affects short-range genomic contacts and modulates the basal-luminal transcriptional program of bladder cancer cells

  Richart, L., Lapi, E., Pancaldi, V., Cuenca-Ardura, M., Pau, E. C-D-S., Madrid-Mencía, M., Neyret-Kahn, H., Radvanyi, F., Rodríguez, J. A., Cuartero, Y., Serra, F., Le Dily, F., Valencia, A., Marti-Renom, M. A. & Real, F. X., 2021, In: Nucleic Acids Research. 49, 19, p. 11005-11021 17 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  17 Citations (Scopus)

  7 Downloads (Pure)
• 2020

  Hi-C chromosome conformation capture sequencing of avian genomes using the BGISEQ-500 platform

  Sandoval-Velasco, M., Antonio Rodriguez, J., Estrada, C. P., Zhang, G., Aiden, E. L., Marti-Renom, M. A., Gilbert, M. T. P. & Smith, O., 2020, In: GigaScience. 9, 8, 7 p., giaa087.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  3 Citations (Scopus)

  34 Downloads (Pure)
• 2019

  Reply to: Retesting the influences of mutation accumulation and antagonistic pleiotropy on human senescence and disease

  Rodríguez, J. A., Farré, X., Muntané, G., Marigorta, U. M., Hughes, D. A., Spataro, N., Bosch, E. & Navarro, A., 2019, In: Nature Ecology and Evolution. 3, 7, p. 994-995 2 p.

  Research output: Contribution to journal › Comment/debate › Research › peer-review
  6 Citations (Scopus)
• 2018

  Biological Processes Modulating Longevity across Primates: A Phylogenetic Genome-Phenome Analysis

  Muntané, G., Farré, X., Rodriguez, J. A., Pegueroles, C., Hughes, D. A., de Magalhães, J. P., Gabaldón, T. & Navarro, A., 2018, In: Molecular Biology and Evolution. 35, 8, p. 1990-2004 15 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  51 Citations (Scopus)

  7 Downloads (Pure)

• Replicability and Prediction: Lessons and Challenges from GWAS

  Marigorta, U. M., Rodríguez, J. A., Gibson, G. & Navarro, A., 2018, In: Trends in Genetics. 34, 7, p. 504-517 14 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  115 Citations (Scopus)
• 2017

  Antagonistic pleiotropy and mutation accumulation influence human senescence and disease

  Rodríguez, J. A., Marigorta, U. M., Hughes, D. A., Spataro, N., Bosch, E. & Navarro, A., 2017, In: Nature Ecology and Evolution. 1, 3, 5 p., 0055.

  Research output: Contribution to journal › Journal article › Research › peer-review
  68 Citations (Scopus)

• Discovering the 3' UTR-mediated regulation of alpha-synuclein

  Marchese, D., Botta-Orfila, T., Cirillo, D., Rodriguez, J. A., Livi, C. M., Fernández-Santiago, R., Ezquerra, M., Martí, M. J., Bechara, E. & Tartaglia, G. G., 2017, In: Nucleic Acids Research. 45, 22, p. 12888-12903 16 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  29 Citations (Scopus)

  6 Downloads (Pure)

• Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples

  Mandage, R., Telford, M., Rodríguez, J. A., Farré, X., Layouni, H., Marigorta, U. M., Cundiff, C., Heredia-Genestar, J. M., Navarro, A. & Santpere, G., 2017, In: PLoS ONE. 12, 6, 19 p., e0179446.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  20 Citations (Scopus)

  4 Downloads (Pure)

• Properties of human disease genes and the role of genes linked to Mendelian disorders in complex disease aetiology

  Spataro, N., Rodríguez, J. A., Navarro, A. & Bosch, E., 2017, In: Human Molecular Genetics. 26, 3, p. 489-500 12 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  32 Citations (Scopus)

  4 Downloads (Pure)
• 2016

  267 Spanish Exomes Reveal Population-Specific Differences in Disease-Related Genetic Variation

  Dopazo, J., Amadoz, A., Bleda, M., Garcia-Alonso, L., Alemán, A., García-García, F., Rodriguez, J. A., Daub, J. T., Muntané, G., Rueda, A., Vela-Boza, A., López-Domingo, F. J., Florido, J. P., Arce, P., Ruiz-Ferrer, M., Méndez-Vidal, C., Arnold, T. E., Spleiss, O., Alvarez-Tejado, M., Navarro, A. & 4 others, Bhattacharya, S. S., Borrego, S., Santoyo-López, J. & Antiñolo, G., 2016, In: Molecular Biology and Evolution. 33, 5, p. 1205-1218 14 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  59 Citations (Scopus)

  7 Downloads (Pure)

• Combining Multiple Hypothesis Testing with Machine Learning Increases the Statistical Power of Genome-wide Association Studies

  Mieth, B., Kloft, M., Rodríguez, J. A., Sonnenburg, S., Vobruba, R., Morcillo-Suárez, C., Farré, X., Marigorta, U. M., Fehr, E., Dickhaus, T., Blanchard, G., Schunk, D., Navarro, A. & Müller, K-R., 2016, In: Scientific Reports. 6, 14 p., 36671.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  55 Citations (Scopus)

  4 Downloads (Pure)

• GWAS replicability across time and space

  Marigorta, U. M., Rodriguez, J. A. & Navarro, A., 2016, Genome-Wide Association Studies: From Polymorphism to Personalized Medicine. Appasani, K. (ed.). Cambridge University Press, p. 53-66

  Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
• 2014

  Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European

  Olalde, I., Allentoft, M. E., Sánchez-Quinto, F., Santpere, G., Chiang, C. W. K., DiGeorgio, M., Prado-Martínez, J., Rodríguez Pérez, J. A., Rasmussen, S., Quilez, J., Ramírez, O., Marigorta, U. M., Fernández-Callejo, M., Prada, M. E., Encinas, J. M. V., Nielsen, R., Netea, M. G., Novembre, J., Sturm, R. A., Sabeti, P. & 4 others, Marquès-Bonet, T., Navarro, A., Willerslev, E. & Lalueza-Fox, C., 2014, In: Nature. 507, 7491, p. 225-228 4 p.

  Research output: Contribution to journal › Letter › Research › peer-review
  244 Citations (Scopus)

• Genomic analysis of the blood attributed to Louis XVI (1754-1793), king of France

  Olalde, I., Sánchez-Quinto, F., Datta, D., Marigorta, U. M., Chiang, C. W. K., Rodríguez, J. A., Fernández-Callejo, M., González, I., Montfort, M., Matas-Lalueza, L., Civit, S., Luiselli, D., Charlier, P., Pettener, D., Ramírez, O., Navarro, A., Himmelbauer, H., Marquès-Bonet, T. & Lalueza-Fox, C., 2014, In: Scientific Reports. 4, 7 p., 4666.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  15 Citations (Scopus)

  5 Downloads (Pure)

• Integrating genomics into evolutionary medicine

  Rodríguez, J. A., Marigorta, U. M. & Navarro, A., 2014, In: Current Opinion in Genetics and Development. 29, p. 97-102 6 p.

  Research output: Contribution to journal › Review › Research › peer-review
  10 Citations (Scopus)