Research output per year
Research output per year
- 1 - 50 out of 205 results
Search results
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2024
Diversity and ecotones in a model ecosystems of sessile species
Hofer, M. & Sneppen, K., 20 Feb 2024, In: Physical Review E. 109, 2, 7 p., 024309.Research output: Contribution to journal › Journal article › Research › peer-review
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Self-inhibiting percolation and viral spreading in epithelial tissue
Xu, X., Nielsen, B. F. & Sneppen, K., 28 Jun 2024, In: eLife. 13, 11 p., RP94056.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile7 Downloads (Pure) -
The dynamics of phage predation on a microcolony
Eriksen, R. S., Larsen, F., Svenningsen, S. L., Sneppen, K. & Mitarai, N., 2024, In: Biophysical Journal. 123, 2, p. 147-156 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
File3 Citations (Scopus)28 Downloads (Pure) -
2023
Epigenetic switching with asymmetric bridging interactions
Skjegstad, L. E. J., Nickels, J. F., Sneppen, K. & Kirkegaard, J. B., 20 Jun 2023, In: Biophysical Journal. 122, 12, p. 2421-2429 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open Access -
Host heterogeneity and epistasis explain punctuated evolution of SARS-CoV-2
Nielsen, B. F., Saad-roy, C. M., Li, Y., Sneppen, K., Simonsen, L., Viboud, C., Levin, S. A., Grenfell, B. T. & Morozov, A. V. (ed.), 15 Feb 2023, In: PLOS Computational Biology. 19, 2, 24 p., e1010896.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile6 Citations (Scopus)1 Downloads (Pure) -
Jag1-Notch cis-interaction determines cell fate segregation in pancreatic development
Xu, X., Seymour, P. A., Sneppen, K., Trusina, A., Egeskov-Madsen, A. L. R., Jørgensen, M. C., Jensen, M. H. & Serup, P., 2023, In: Nature Communications. 14, 17 p., 348.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile9 Citations (Scopus)81 Downloads (Pure) -
The counterintuitive implications of superspreading diseases
Nielsen, B. F., Sneppen, K. & Simonsen, L., 31 Oct 2023, In: Nature Communications. 14, 1, 3 p., 6954.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile1 Citation (Scopus)18 Downloads (Pure) -
Tradeoff between speed and reproductive number in pathogen evolution
Eilersen, A. T., Nielsen, B. F. & Sneppen, K., 12 Jun 2023, In: Physical Review Research. 5, 2, 8 p., 023003.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile1 Citation (Scopus)28 Downloads (Pure) -
2022
Emergence of networks of shared restriction-modification systems in phage-bacteria ecosystems
Eriksen, R. S., Malhotra, N., Seshasayee, A. S. N., Sneppen, K. & Krishna, S., 2022, In: Journal of Biosciences. 47, 3, 19 p., 38.Research output: Contribution to journal › Journal article › Research › peer-review
File4 Citations (Scopus)6 Downloads (Pure) -
Emerging diversity in a population of evolving intransitive dice
Kirkegaard, J. B. & Sneppen, K., 17 Nov 2022, In: Physical Review E. 106, 5, 6 p., 054409.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile2 Citations (Scopus)25 Downloads (Pure) -
From kill the winner to eliminate the winner in open phage-bacteria systems
Marantos, A., Mitarai, N. & Sneppen, K., 8 Aug 2022, In: PLOS Computational Biology. 18, 8, 15 p., e1010400.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile11 Citations (Scopus)105 Downloads (Pure) -
Lockdowns exert selection pressure on overdispersion of SARS-CoV-2 variants
Nielsen, B. F., Eilersen, A., Simonsen, L. & Sneppen, K., 2 Sep 2022, In: Epidemics. 40, 7 p., 100613.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile5 Citations (Scopus)28 Downloads (Pure) -
Pancreatic alpha and beta cells are globally phase-locked
Ren, H., Li, Y., Han, C., Yu, Y., Shi, B., Peng, X., Wu, S., Yang, X., Kim, S., Chen, L., Tang, C. & Zhang, T., 28 Jun 2022, In: Nature Communications. 13, 1, 16 p., 3721.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile9 Citations (Scopus)32 Downloads (Pure) -
Protection of bacteriophage-sensitive Escherichia coli by lysogens
Brown, S., Mitarai, N. & Sneppen, K., 2 Apr 2022, In: Proceedings of the National Academy of Sciences USA (PNAS). 119, 4, e2106005119.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile5 Citations (Scopus)78 Downloads (Pure) -
Spatial model of Ebola outbreaks contained by behavior change
Halvorsen, G. S., Simonsen, L. & Sneppen, K., 14 Mar 2022, In: Plos One. 17, 3, 11 p., e0264425.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile1 Citation (Scopus)26 Downloads (Pure) -
The transcription factor Atf1 lowers the transition barrier for nucleosome-mediated establishment of heterochromatin
Nickels, J. F., Della-Rosa, M. E., Miguelez Goyeneche, I., Charlton, S. J., Sneppen, K. & Thon, G., 2022, In: Cell Reports. 39, 7, 17 p., 110828.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile10 Citations (Scopus)45 Downloads (Pure) -
2021
Differences in social activity increase efficiency of contact tracing
Nielsen, B. F., Sneppen, K., Simonsen, L. & Mathiesen, J., 2 Oct 2021, In: European Physical Journal B. 94, 10, 11 p., 209.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile5 Citations (Scopus)29 Downloads (Pure) -
Establishment of heterochromatin in domain-size-dependent bursts
Nickels, J. F., Edwards, A. K., Charlton, S. J., Mortensen, A. M., Hougaard, S. C. L., Trusina, A., Sneppen, K. & Thon, G., 13 Apr 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 15, 11 p., e2022887118.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile16 Citations (Scopus)90 Downloads (Pure) -
Overdispersion in COVID-19 increases the effectiveness of limiting nonrepetitive contacts for transmission control
Sneppen, K., Nielsen, B. F., Taylor, R. J. & Simonsen, L., 6 Apr 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 14, 6 p., 2016623118.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile64 Citations (Scopus)35 Downloads (Pure) -
SARS-CoV-2 superspreading in cities vs the countryside
Eilersen, A. T. & Sneppen, K., 23 Feb 2021, In: A P M I S. Acta Pathologica, Microbiologica et Immunologica Scandinavica. 129, 7, p. 401-407 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile8 Citations (Scopus)33 Downloads (Pure) -
Social contagion in a world with asymmetric influence
Halvorsen, G. S., Pedersen, B. N. & Sneppen, K., 3 Feb 2021, In: Physical Review E. 103, 2, 5 p., 022303.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile2 Citations (Scopus)43 Downloads (Pure) -
Superspreading of airborne pathogens in a heterogeneous world
Kirkegaard, J. B., Mathiesen, J. & Sneppen, K., 27 May 2021, In: Scientific Reports. 11, 1, 9 p., 11191.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile75 Downloads (Pure) -
Superspreading quantified from bursty epidemic trajectories
Kirkegaard, J. B. & Sneppen, K., 16 Dec 2021, In: Scientific Reports. 11, 1, 7 p., 24124.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile6 Citations (Scopus)33 Downloads (Pure) -
The COVID-19 pandemic: key considerations for the epidemic and its control
Ørskov, S., Nielsen, B. F., Føns, S., Sneppen, K. & Simonsen, L., Jul 2021, In: APMIS. 129, 7, p. 408-420 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open Access10 Citations (Scopus) -
Variability of Individual Infectiousness Derived from Aggregate Statistics of COVID-19
Kirkegaard, J. B. & Sneppen, K., 15 Jan 2021, In: medRxiv : the preprint server for health sciences. 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile18 Downloads (Pure) -
2020
Airborne Pathogens in a Heterogeneous World: Superspreading & Mitigation
Kirkegaard, J. B., Mathiesen, J. & Sneppen, K., 27 Oct 2020, In: medRxiv : the preprint server for health sciences. 9 p.Research output: Contribution to journal › Journal article › Research
Open AccessFile23 Downloads (Pure) -
Chaos in disease outbreaks among prey
Eilersen, A. T., Jensen, M. H. & Sneppen, K., 3 Mar 2020, In: Scientific Reports. 10, 7 p., 3907.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile12 Citations (Scopus)127 Downloads (Pure) -
Cost-benefit of limited isolation and testing in COVID-19 mitigation
Eilersen, A. & Sneppen, K., 29 Oct 2020, In: Scientific Reports. 10, 1, 7 p., 18543.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile19 Citations (Scopus)35 Downloads (Pure) -
Hitchhiking, collapse, and contingency in phage infections of migrating bacterial populations
Ping, D., Wang, T., Fraebel, D. T., Maslov, S., Sneppen, K. & Kuehn, S., 1 Aug 2020, In: ISME Journal. 14, 8, p. 2007-2018 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
21 Citations (Scopus) -
Kronik: Risikobaseret genåbning af Danmark kan give færre alvorligt syge og en hurtigere genåbning
Kirkeby, C., Græsbøll, K., Halasa, T., Sneppen, K. & Christiansen, L. E., 2020, In: Ingenøren.dk.Research output: Contribution to journal › Journal article › Communication
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Modelling value bubbles in an attention based economy
Toftdahl Olesen, C. & Sneppen, K., 2 Mar 2020, In: European Physical Journal B. 93, 3, 5 p., 36.Research output: Contribution to journal › Journal article › Research › peer-review
1 Citation (Scopus) -
Model to Link Cell Shape and Polarity with Organogenesis
Nielsen, B. F., Nissen, S. B., Sneppen, K., Mathiesen, J. & Trusina, A., 10 Jan 2020, In: iScience. 23, 2, p. 1-10 10 p., 100830.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile9 Citations (Scopus)133 Downloads (Pure) -
On Phage Adsorption to Bacterial Chains
Eriksen, R. S., Mitarai, N. & Sneppen, K., 3 Nov 2020, In: Biophysical Journal. 119, 9, p. 1896-1904 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile5 Citations (Scopus)44 Downloads (Pure) -
Optimal Transport Flows for Distributed Production Networks
Kirkegaard, J. B. & Sneppen, K., 22 May 2020, In: Physical Review Letters. 124, 20, 5 p., 208101.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile10 Citations (Scopus)182 Downloads (Pure) -
Repression of the lysogenic PR promoter in bacteriophage TP901-1 through binding of a CI-MOR complex to a composite OM-OR operator
Pedersen, M., Neergaard, J. T., Cassias, J., Rasmussen, K. K., Lo Leggio, L., Sneppen, K., Hammer, K. & Kilstrup, M., 26 May 2020, In: Scientific Reports. 10, 1, 13 p., 8659.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile6 Citations (Scopus)65 Downloads (Pure) -
Sustainability of spatially distributed bacteria-phage systems
Eriksen, R. S., Mitarai, N. & Sneppen, K., 2020, In: Scientific Reports. 10, 1, p. 1-12 3154.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile17 Citations (Scopus)89 Downloads (Pure) -
The uneasy coexistence of predators and pathogens
Eilersen, A. T. & Sneppen, K., 2 Jul 2020, In: The European Physical Journal E: Soft Matter and Biological Physics. 43, 7, 7 p., 42.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile3 Citations (Scopus)110 Downloads (Pure) -
2019
Applying allometric scaling to predator-prey systems
Eilersen, A. & Sneppen, K., 8 Feb 2019, In: Physical Review E. 99, 2, 8 p., 022405.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile6 Citations (Scopus)179 Downloads (Pure) -
Fast Translation within the First 45 Codons Decreases mRNA Stability and Increases Premature Transcription Termination in E. coli
Pedersen, S., Terkelsen, T. B., Eriksen, M., Hauge, M. K., Lund, C. C., Sneppen, K. & Mitarai, N., 2019, In: Journal of Molecular Biology. 431, 6, p. 1088-1097 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
4 Citations (Scopus) -
Multi stability and global bifurcations in epidemic model with distributed delay SIRnS-model
Jensen, G. G., Uekermann, F. & Sneppen, K., 1 Feb 2019, In: European Physical Journal B. 92, 2, 28.Research output: Contribution to journal › Journal article › Research › peer-review
3 Citations (Scopus) -
Regime Shifts in a Phage-Bacterium Ecosystem and Strategies for Its Control
Maslov, S. & Sneppen, K., 1 Nov 2019, In: mSystems. 5, 4(6), e00470-19.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile3 Citations (Scopus)62 Downloads (Pure) -
Self-assembly, buckling and density-invariant growth of three-dimensional vascular networks
Kirkegaard, J. B., Nielsen, B. F., Trusina, A. & Sneppen, K., 31 Oct 2019, In: Journal of the Royal Society. Interface. 16, 159, 8 p., 20190517.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile3 Citations (Scopus)163 Downloads (Pure) -
Theoretical analysis of Polycomb-Trithorax systems predicts that poised chromatin is bistable and not bivalent
Sneppen, K. & Ringrose, L., 13 May 2019, In: Nature Communications. 10, 18 p., 2133.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile51 Citations (Scopus)108 Downloads (Pure) -
2018
A growing microcolony can survive and support persistent propagation of virulent phages
Eriksen, R. S., Svenningsen, S. L., Sneppen, K. & Mitarai, N., 1 Jan 2018, In: Proceedings of the National Academy of Sciences USA (PNAS). 115, 2, p. 337-342Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile49 Citations (Scopus) -
Deconstructing the principles of ductal network formation in the pancreas
Dahl-Jensen, S. B., Yennek, S., Flasse, L., Larsen, H. L., Sever, D., Karremore, G., Novak, I., Sneppen, K. & Botton, A., 2018, In: PLOS Biology. 16, 7, 25 p., e2002842.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile25 Citations (Scopus)198 Downloads (Pure) -
Exploring the Link between Nucleosome Occupancy and DNA Methylation
Lövkvist, C. E., Sneppen, K. & Härter, J. O. M., 12 Jan 2018, In: Frontiers in Genetics. 8, 7 p., 232.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile10 Citations (Scopus)68 Downloads (Pure) -
Globalization in a nutshell
Sneppen, K. & Bornholdt, S., 29 Oct 2018, In: Physical Review E. 98, 4, 6 p., 022314.Research output: Contribution to journal › Journal article › Research › peer-review
File2 Citations (Scopus) -
Theoretical tool bridging cell polarities with development of robust morphologies
Nissen, S. B., Rønhild, S., Trusina, A. & Sneppen, K., 27 Nov 2018, In: eLife. 7, 25 p., e38407.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile20 Citations (Scopus)267 Downloads (Pure) -
Theory of invasion extinction dynamics in minimal food webs
Haerter, J. O., Mitarai, N. & Sneppen, K., 12 Feb 2018, In: Physical Review E. 97, 2, 10 p., 022404.Research output: Contribution to journal › Journal article › Research › peer-review
File4 Citations (Scopus) -
2017
Efficient chromosomal-scale DNA looping in Escherichia coli using multiple DNA-looping elements
Hao, N., Sneppen, K., Shearwin, K. E. & Dodd, I. B., 19 May 2017, In: Nucleic Acids Research. 45, 9, p. 5074-5085Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile6 Citations (Scopus)106 Downloads (Pure)