Kristine Bohmann

Search results

• 2024

  Airborne environmental DNA captures terrestrial vertebrate diversity in nature

  Lynggaard, C., Frøslev, T. G., Johnson, M. S., Olsen, M. T. & Bohmann, K., 2024, In: Molecular Ecology Resources. 24, 1, 20 p., e13840.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  9 Citations (Scopus)

  2 Downloads (Pure)

• Analysing the effects of distance, taxon and biomass on vertebrate detections using bulk-collected carrion fly iDNA

  Fernandes, K., Bateman, P. W., Saunders, B. J., Gibberd, M., Bunce, M., Bohmann, K. & Nevill, P., 2024, In: Royal Society Open Science. 11, 4, 15 p., 231286.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  9 Downloads (Pure)

• Diet components associated with specific bacterial taxa shape overall gut community compositions in omnivorous African viverrids

  Storm, M. B., Arfaoui, E. M. R., Simelane, P., Denlinger, J., Dias, C. A., da Conceição, A. G., Monadjem, A., Bohmann, K., Poulsen, M. & Bodawatta, K. H., 2024, In: Ecology and Evolution. 14, 7, 14 p., e11486.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  7 Downloads (Pure)

• Navigating diversity: primer impact on arthropod recovery in molecular environmental monitoring in tropical Amazon

  Penner, F. V., Lynggaard, C., Argolo, L. A., da Silva, Y. K. R., de Oliveira, G. C., Bohmann, K. & Gastauer, M., 2024, In: Frontiers in Ecology and Evolution. 12, 13 p., 1411388.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  3 Downloads (Pure)
• 2023

  Perspectives and Future Developments Within Sedimentary DNA Research

  Holman, L. E., Wang, Y., Sawafuji, R., Epp, L. S., Bohmann, K. & Pedersen, M. W., 2023, Tracking Environmental Change Using Lake Sediments: Sedimentary DNA. Capo, E., Barouillet, C. & Smol, J. P. (eds.). Springer, Vol. 6. p. 393-416 (Developments in Paleoenvironmental Research, Vol. 21).

  Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

• Transforming terrestrial biodiversity surveys using airborne eDNA

  Bohmann, K. & Lynggaard, C., 2023, In: Trends in Ecology and Evolution. 38, 2, p. 119-121 3 p.

  Research output: Contribution to journal › Letter › Research › peer-review

  Open Access

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  16 Citations (Scopus)

  35 Downloads (Pure)

• Use of carrion fly iDNA metabarcoding to monitor invasive and native mammals

  Fernandes, K., Bateman, P. W., Saunders, B. J., Bunce, M., Bohmann, K. & Nevill, P., 2023, In: Conservation Biology. 37, 5, 12 p., e14098.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  7 Citations (Scopus)

  10 Downloads (Pure)

• Vertebrate environmental DNA from leaf swabs

  Lynggaard, C., Calvignac-Spencer, S., Chapman, C. A., Kalbitzer, U., Leendertz, F. H., Omeja, P. A., Opito, E. A., Sarkar, D., Bohmann, K. & Gogarten, J. F., 2023, In: Current Biology. 33, 16, p. R853-R854

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

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  10 Citations (Scopus)

  26 Downloads (Pure)
• 2022

  Airborne environmental DNA captures terrestrial vertebrate diversity in nature

  Lynggaard, C., Frøslev, T. G., Johnson, M. S., Olsen, M. T. & Bohmann, K., 2022, bioRxiv, 30 p.

  Research output: Working paper › Preprint

  Open Access

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  45 Downloads (Pure)

• Airborne environmental DNA for terrestrial vertebrate community monitoring

  Lynggaard, C., Bertelsen, M. F., Jensen, C. V., Johnson, M. S., Frøslev, T. G., Olsen, M. T. & Bohmann, K., 2022, In: Current Biology. 32, 3, p. 701-707.e5 12 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  120 Citations (Scopus)

  73 Downloads (Pure)

• A two-step metagenomics approach for the identification and mitochondrial DNA contig assembly of vertebrate prey from the blood meals of common vampire bats (Desmodus rotundus)

  Chua, P. Y. S., Carøe, C., Crampton-Platt, A., Reyes-Avila, C. S., Jones, G., Streicker, D. G. & Bohmann, K., 2022, In: Metabarcoding and Metagenomics. 6, p. 75-87 13 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  3 Citations (Scopus)

  20 Downloads (Pure)

• Shunning the scoop: Sidestepping the race to publish

  Lynggaard, C., Littlefair, J. E., Bohmann, K. & Clare, E. L., 2022, In: iScience. 25, 4, 8 p., 104080.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

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  28 Downloads (Pure)

• Strategies for sample labelling and library preparation in DNA metabarcoding studies

  Bohmann, K., Elbrecht, V., Carøe, C., Bista, I., Leese, F., Bunce, M., Yu, D. W., Seymour, M., Dumbrell, A. J. & Creer, S., 2022, In: Molecular Ecology Resources. 22, 4, p. 1231-1246 16 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  83 Citations (Scopus)

  33 Downloads (Pure)

• The potential of aquatic bloodfeeding and nonbloodfeeding leeches as a tool for iDNA characterisation

  Lynggaard, C., Oceguera-Figueroa, A., Kvist, S., Gilbert, M. T. P. & Bohmann, K., 2022, In: Molecular Ecology Resources. 22, 2, p. 539-553 15 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  14 Citations (Scopus)

  30 Downloads (Pure)

• Toward global integration of biodiversity big data: a harmonized metabarcode data generation module for terrestrial arthropods

  Arribas, P., Andújar, C., Bohmann, K., deWaard, J. R., Economo, E. P., Elbrecht, V., Geisen, S., Goberna, M., Krehenwinkel, H., Novotny, V., Zinger, L., Creedy, T. J., Meramveliotakis, E., Noguerales, V., Overcast, I., Morlon, H., Papadopoulou, A., Vogler, A. P. & Emerson, B. C., 2022, In: GigaScience. 11, 12 p., giac065.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  19 Citations (Scopus)

  15 Downloads (Pure)
• 2021

  Biodiversity Soup II: A bulk-sample metabarcoding pipeline emphasizing error reduction

  Yang, C., Bohmann, K., Wang, X., Cai, W., Wales, N., Ding, Z., Gopalakrishnan, S. & Yu, D. W., 2021, In: Methods in Ecology and Evolution. 12, 7, p. 1252-1264 13 p.

  Research output: Contribution to journal › Journal article › peer-review

  Open Access

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  31 Citations (Scopus)

  34 Downloads (Pure)

• Connecting high-throughput biodiversity inventories: Opportunities for a site-based genomic framework for global integration and synthesis

  Arribas, P., Andujar, C., Bidartondo, M. I., Bohmann, K., Coissac, E., Creer, S., deWaard, J. R., Elbrecht, V., Ficetola, G. F., Goberna, M., Kennedy, S., Krehenwinkel, H., Leese, F., Novotny, V., Ronquist, F., Yu, D. W., Zinger, L., Creedy, T. J., Meramveliotakis, E., Noguerales, V. & 5 others, Overcast, I., Morlon, H., Vogler, A. P., Papadopoulou, A. & Emerson, B. C., 2021, In: Molecular Ecology. 30, 5, p. 1120-1135 16 p.

  Research output: Contribution to journal › Review › Research › peer-review

  Open Access

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  26 Citations (Scopus)

  35 Downloads (Pure)

• DNA metabarcoding reveals that African leopard diet varies between habitats

  Havmøller, R. W., Jacobsen, N. S., Havmøller, L. W., Rovero, F., Scharff, N. & Bohmann, K., 2021, In: African Journal of Ecology. 59, 1, p. 37-50 14 p.

  Research output: Contribution to journal › Journal article › peer-review
  18 Citations (Scopus)

• DNAqua-Net conference unites participants from around the world with the quest to standardize and implement DNA-based aquatic biomonitoring

  Bohmann, K., Chua, P., Holman, L. E. & Lynggaard, C., 2021, In: Environmental DNA. 3, 5, p. 884-888 5 p.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

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  6 Citations (Scopus)

  19 Downloads (Pure)

• Labelling strategies in metabarcoding studies & how to ensure that nucleotide tags stay in place

  Bohmann, K. & Carøe, C., 2021. 3 p.

  Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  Open Access

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  17 Downloads (Pure)

• Metagenomics: A viable tool for reconstructing herbivore diet

  Chua, P. Y. S., Crampton-Platt, A., Lammers, Y., Alsos, I. G., Boessenkool, S. & Bohmann, K., 2021, In: Molecular Ecology Resources. 21, 7, p. 2249-2263

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  22 Citations (Scopus)

  24 Downloads (Pure)

• Mitochondrial genomes of Danish vertebrate species generated for the national DNA reference database, DNAmark

  Margaryan, A., Noer, C. L., Richter, S. R., Restrup, M. E., Bülow‐hansen, J. L., Leerhøi, F., Langkjær, E. M. R., Gopalakrishnan, S., Carøe, C., Gilbert, M. T. P. & Bohmann, K., 2021, In: Environmental DNA. 3, 2, p. 472-480

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  30 Citations (Scopus)

  83 Downloads (Pure)

• Molecular dietary analyses of western capercaillies (Tetrao urogallus) reveal a diverse diet

  Chua, P. Y. S., Lammers, Y., Menoni, E., Ekrem, T., Bohmann, K., Boessenkool, S. & Alsos, I. G., 2021, In: Environmental DNA. 3, 6, p. 1156-1171 16 p.

  Research output: Contribution to journal › Journal article › peer-review

  Open Access

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  9 Citations (Scopus)

  32 Downloads (Pure)

• Towards the extended barcode concept: Generating DNA reference data through genome skimming of danish plants

  Chua, P. Y. S., Leerhøi, F., Langkjær, E. M. R., Margaryan, A., Noer, C. L., Richter, S. R., Restrup, M. E., Bruun, H. H., Hartvig, I., Coissac, E., Boessenkool, S., Alsos, I. G. & Bohmann, K., 2021, 38 p. (bioRxiv).

  Research output: Working paper › Preprint › Research

  Open Access

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  23 Downloads (Pure)
• 2020

  An appetite for pests: Synanthropic insectivorous bats exploit cotton pest irruptions and consume various deleterious arthropods

  Cohen, Y., Bar-David, S., Nielsen, M., Bohmann, K. & Korine, C., 2020, In: Molecular Ecology. 29, 6, p. 1185-1198 14 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  46 Citations (Scopus)

• Beyond DNA barcoding: The unrealized potential of genome skim data in sample identification

  Bohmann, K., Mirarab, S., Bafna, V. & Gilbert, M. T. P., 2020, In: Molecular Ecology. 29, 14, p. 2521-2534

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  50 Citations (Scopus)

  85 Downloads (Pure)

• DNA-Based Arthropod Diversity Assessment in Amazonian Iron Mine Lands Show Ecological Succession Towards Undisturbed Reference Sites

  Lynggaard, C., Yu, D. W., Oliveira, G., Caldeira, C. F., Ramos, S. J., Ellegaard, M. R., Gilbert, M. T. P., Gastauer, M. & Bohmann, K., 2020, In: Frontiers in Ecology and Evolution. 8, 15 p., 590976.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  10 Citations (Scopus)

  35 Downloads (Pure)

• Tagsteady: A metabarcoding library preparation protocol to avoid false assignment of sequences to samples

  Carøe, C. & Bohmann, K., 2020, In: Molecular Ecology Resources. 20, 6, p. 1620-1631 12 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  49 Citations (Scopus)
• 2019

  A simplified DNA extraction protocol for unsorted bulk arthropod samples that maintains exoskeletal integrity

  Nielsen, M., Gilbert, M. T. P., Pape, T. & Bohmann, K., 2019, In: Environmental DNA. 1, 2, p. 144-154

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  36 Citations (Scopus)

  155 Downloads (Pure)

• Promises and pitfalls of using high-throughput sequencing for diet analysis

  Alberdi, A., Aizpurua, O., Bohmann, K., Gopalakrishnan, S., Lynggaard, C., Nielsen, M. & Gilbert, M. T. P., Mar 2019, In: Molecular Ecology Resources. 19, 2, p. 327-348

  Research output: Contribution to journal › Review › Research › peer-review
  160 Citations (Scopus)

• Skmer: assembly-free and alignment-free sample identification using genome skims

  Sarmashghi, S., Bohmann, K., Gilbert, M. T. P., Bafna, V. & Mirarab, S., 2019, In: Genome Biology. 20, 20 p., 34.

  Research output: Contribution to journal › Journal article › peer-review

  Open Access

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  65 Citations (Scopus)

  160 Downloads (Pure)

• Systematics of West African Miniopterus with the description of a new species

  Monadjem, A., Shapiro, J. T., Richards, L. R., Karabulut, H., Crawley, W., Nielsen, I. B., Hansen, A., Bohmann, K. & Mourier, T., Dec 2019, In: Acta Chiropterologica. 21, 2, p. 237-256

  Research output: Contribution to journal › Journal article › peer-review
  19 Citations (Scopus)

• Use of emerging complete organelle DNA reference database in the diet analysis of the herbivorous wood grouse, western capercaillies (Tetrao urogallus)

  Chua, P., Boessenkool, S., Alsos, I. G., Ekrem, T., Crampton-Platt, A. & Bohmann, K., 2019.

  Research output: Contribution to conference › Poster › Research

• Using metabarcoding to compare the suitability of two blood-feeding leech species for sampling mammalian diversity in North Borneo

  Drinkwater, R., Schnell, I. B., Bohmann, K., Bernard, H., Veron, G., Clare, E., Gilbert, M. T. P. & Rossiter, S. J., 2019, In: Molecular Ecology Resources. 19, 1, p. 105-117

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  35 Citations (Scopus)

  133 Downloads (Pure)

• Vertebrate diversity revealed by metabarcoding of bulk arthropod samples from tropical forests

  Lynggaard, C., Nielsen, M., Santos‐bay, L., Gastauer, M., Oliveira, G. & Bohmann, K., 2019, In: Environmental Engineering. 1, 4, p. 329-341

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  36 Citations (Scopus)

  158 Downloads (Pure)
• 2018

  Assembly-free and alignment-free sample identification using genome skims

  Sarmashghi, S., Bohmann, K., Gilbert, M. T. P., Bafna, V. & Mirarab, S., 1 Jan 2018, In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 10812, p. 276-277 2 p.

  Research output: Contribution to journal › Conference abstract in journal › peer-review

• Debugging diversity – a pan-continental exploration of the potential of terrestrial blood-feeding leeches as a vertebrate monitoring tool

  Schnell, I. B., Bohmann, K., Schultze, S. E., Richter, S. R., Murray, D. C., Sinding, M. H. S., Bass, D., Cadle, J. E., Campbell, M. J., Dolch, R., Edwards, D. P., Gray, T. N. E., Hansen, T., Hoa, A. N. Q., Noer, C. L., Heise-Pavlov, S., Sander Pedersen, A. F., Ramamonjisoa, J. C., Siddall, M. E., Tilker, A. & 7 others, Traeholt, C., Wilkinson, N., Woodcock, P., Yu, D. W., Bertelsen, M. F., Bunce, M. & Gilbert, M. T. P., 2018, In: Molecular Ecology Resources. 18, 6, p. 1282-1298 17 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  46 Citations (Scopus)

• Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat

  Zepeda Mendoza, M. L., Xiong, Z., Escalera-Zamudio, M., Runge, A. K. W., Thézé, J., Streicker, D., Frank, H. K., Loza-Rubio, E., Liu, S., Ryder, O. A., Castruita, J. A. S., Katzourakis, A., Pacheco, G. A., Taboada, B., Löber, U., Pybus, O. G., Li, Y., Rojas-Anaya, E., Bohmann, K., Carmona Baez, A. & 9 others, Arias, C. F., Liu, S., Greenwood, A. D., Bertelsen, M. F., White, N. E., Bunce, M., Zhang, G., Sicheritz-Ponten, T. & Gilbert, T., 2018, In: Nature Ecology & Evolution. 2, 4, p. 659-668 10 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  120 Citations (Scopus)

  321 Downloads (Pure)

• Scrutinizing key steps for reliable metabarcoding of environmental samples

  Alberdi, A., Aizpurua, O., Gilbert, M. T. P. & Bohmann, K., 2018, In: Methods in Ecology and Evolution. 9, 1, p. 134-147 14 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  462 Citations (Scopus)

• Using DNA metabarcoding for simultaneous inference of common vampire bat diet and population structure

  Bohmann, K., Gopalakrishnan, S., Nielsen, M., Nielsen, L. D. S. B., Jones, G., Streicker, D. G. & Gilbert, T., 2018, In: Molecular Ecology Resources. 18, 5, p. 1050-1063 14 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  62 Citations (Scopus)

  406 Downloads (Pure)
• 2017

  Connecting Earth observation to high-throughput biodiversity data

  Bush, A., Sollmann, R., Wilting, A., Bohmann, K., Cole, B., Balzter, H., Martius, C., Zlinszky, A., Calvignac-Spencer, S., Cobbold, C. A., Dawson, T. P., Emerson, B. C., Ferrier, S., Gilbert, T., Herold, M., Jones, L., Leendertz, F. H., Matthews, L., Millington, J. D. A., Olson, J. R. & 11 others, Ovaskainen, O., Raffaelli, D., Reeve, R., Rödel, M-O., Rodgers, T. W., Snape, S., Visseren-Hamakers, I., Vogler, A. P., White, P. C. L., Wooster, M. J. & Yu, D. W., 22 Jun 2017, In: Nature Ecology and Evolution. 1, 7, 0176.

  Research output: Contribution to journal › Review › Research › peer-review
  158 Citations (Scopus)

• Diet determined by next generation sequencing reveals pest consumption and opportunistic foraging by bats in macadamia orchards in South Africa

  Taylor, P. J., Matamba, E., Steyn, J. N. K., Nangammbi, T., Zepeda Mendoza, M. L. & Bohmann, K., Dec 2017, In: Acta Chiropterologica. 19, 2, p. 239-254 16 p.

  Research output: Contribution to journal › Journal article › peer-review
  25 Citations (Scopus)
• 2016

  DAMe: a toolkit for the initial processing of datasets with PCR replicates of double-tagged amplicons for DNA metabarcoding analyses

  Zepeda Mendoza, M. L., Bohmann, K., Baez, A. C. & Gilbert, T., 2016, In: BMC Research Notes. 9, 13 p., 255.

  Research output: Contribution to journal › Journal article › peer-review

  Open Access

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  39 Citations (Scopus)

  219 Downloads (Pure)

• Do vertebrate gut metagenomes confer rapid ecological adaptation?

  Alberdi, A., Aizpurua, O., Bohmann, K., Zepeda Mendoza, M. L. & Gilbert, T., Sep 2016, In: Trends in Ecology & Evolution. 31, 9, p. 689-699 11 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  233 Citations (Scopus)

• First record of Vespertilio murinus from the Arabian Peninsula

  Monadjem, A., Joubert, C., Richards, L., Nielsen, I. B., Nielsen, M., Kjartansdóttir, K. R., Bohmann, K., Mourier, T. & Hansen, A. J., 2016, In: Vespertilio. 18, p. 79-89 11 p.

  Research output: Contribution to journal › Journal article › peer-review
• 2015

  Ancient and modern environmental DNA

  Pedersen, M. W., Overballe-Petersen, S., Ermini, L., Der Sarkissian, C., Haile, J. S., Hellström, A. M., Spens, J., Thomsen, P. F., Bohmann, K., Cappellini, E., Schnell, I. B., Wales, N., Carøe, C., Campos, P., Schmidt, A. M. Z., Gilbert, M. T. P., Hansen, A. J., Orlando, L. A. A. & Willerslev, E., 2015, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 370, 1660, 11 p., 20130383.

  Research output: Contribution to journal › Review › Research › peer-review
  252 Citations (Scopus)

• Bats, Blood-Feeders and Biodiversity: Illumina Metabarcoding in Dietary Studies

  Bohmann, K., 2015, Natural History Museum of Denmark, Faculty of Science, University of Copenhagen. 320 p.

  Research output: Book/Report › Ph.D. thesis › Research

  File

• Tag jumps illuminated - reducing sequence-to-sample misidentifications in metabarcoding studies

  Schnell, I. B., Bohmann, K. & Gilbert, M. T. P., 2015, In: Molecular Ecology Resources. 15, 6, p. 1289-1303 15 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  406 Citations (Scopus)
• 2014

  Environmental DNA for wildlife biology and biodiversity monitoring

  Bohmann, K., Evans, A., Gilbert, M. T. P., Carvalho, G. R., Creer, S., Knapp, M., Yu, D. W. & de Bruyn, M., 2014, In: Trends in Ecology & Evolution. 29, 6, p. 358-367 10 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  924 Citations (Scopus)

• Second generation sequencing and morphological faecal analysis reveal unexpected foraging behaviour by Myotis nattereri (Chiroptera, Vespertilionidae) in winter

  Hope, P. R., Bohmann, K., Gilbert, M. T. P., Zepeda Mendoza, M. L., Razgour, O. & Jones, G., 2014, In: Frontiers in Zoology. 11, 15 p., 39.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  77 Citations (Scopus)

  3339 Downloads (Pure)