Leise Riber

Research output

Research output per year 2004 2010 2011 2016 2018 2020 2021 2023 2024

• 1268 Citations
• 31 Journal article
• 16 Poster
• 5 Review
• 2 Editorial

Research output per year

Research output per year

Search results

• 2024

  Now and then in eukaryotic DNA methylation

  Stein, R. A., Gomaa, F. E., Raparla, P. & Riber, L., 2024, In: Physiological Genomics. 56, 11, p. 741-763 23 p.

  Research output: Contribution to journal › Review › Research › peer-review
• 2023

  Detection of nucleotide modifications in bacteria and bacteriophages: Strengths and limitations of current technologies and software

  Nielsen, T. K., Forero-Junco, L. M., Kot, W., Moineau, S., Hansen, L. H. & Riber, L., 2023, In: Molecular Ecology. 32, 6, p. 1236-1247 12 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  29 Downloads (Pure)

• Epigenetic effects of short-chain fatty acids from the large intestine on host cells

  Stein, R. A. & Riber, L., 2023, In: microLife. 4, 16 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  12 Citations (Scopus)

  8 Downloads (Pure)

• Pheno- and Genotyping of Three Novel Bacteriophage Genera That Target a Wheat Phyllosphere Sphingomonas Genus

  Riber, L., Carstens, A. B., Dougherty, P. E., Roy, C., Willenbücher, K., Hille, F., Franz, C. M. A. P. & Hansen, L. H., 2023, In: Microorganisms. 11, 7, 17 p., 1831.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  1 Citation (Scopus)

  16 Downloads (Pure)

• Widespread and largely unknown prophage activity, diversity, and function in two genera of wheat phyllosphere bacteria

  Dougherty, P. E., Nielsen, T. K., Riber, L., Lading, H. H., Forero-Junco, L. M., Kot, W., Raaijmakers, J. M. & Hansen, L. H., 2023, In: ISME Journal. 17, 12, p. 2415-2425

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  17 Downloads (Pure)
• 2021

  An improved direct metamobilome approach increases the detection of larger-sized circular elements across kingdoms

  Alanin, K. W. S., Jørgensen, T. S., Browne, P. D., Petersen, B., Riber, L., Kot, W. & Hansen, L. H., 2021, In: Plasmid. 115, 11 p., 102576.

  Research output: Contribution to journal › Journal article › Research › peer-review

  File
  5 Citations (Scopus)

  17 Downloads (Pure)

• Bacterial Chromosomes Under Changing Environmental Conditions: Editorial

  Glinkowska, M., Waldminghaus, T. & Riber, L., 2021, In: Frontiers in Microbiology. 12, 3 p., 633466.

  Research output: Contribution to journal › Editorial › Research

  Open Access

  File
  1 Citation (Scopus)

  15 Downloads (Pure)

• Epigenetic Memories: The Hidden Drivers of Bacterial Persistence?

  Riber, L. & Hansen, L. H., 2021, In: Trends in Microbiology. 29, 3, p. 190-194 5 p.

  Research output: Contribution to journal › Editorial › Research

  Open Access

  File
  31 Citations (Scopus)

  21 Downloads (Pure)

• Extension of Plant Phenotypes by the Foliar Microbiome

  Hawkes, C. V., Kjøller, R., Raaijmakers, J. M., Riber, L., Christensen, S., Rasmussen, S., Christensen, J. H., Dahl, A. B., Westergaard, J. C., Nielsen, M., Brown-Guedira, G. & Hestbjerg Hansen, L., 2021, In: Annual Review of Plant Biology. 72, p. 823-846 24 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  31 Citations (Scopus)
• 2020

  A converging subset of soil bacterial taxa is permissive to the IncP-1 plasmid pKJK5 across a range of soil copper contamination

  Song, J., Klümper, U., Riber, L., Dechesne, A., Smets, B. F., Sørensen, S. J. & Brandt, K. K., 2020, In: FEMS Microbiology Ecology. 96, 11, 10 p., fiaa200.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  9 Citations (Scopus)

  12 Downloads (Pure)

• Bacterial Chromosome Replication and DNA Repair During the Stringent Response

  Sinha, A. K., Løbner-Olesen, A. & Riber, L., 2020, In: Frontiers in Microbiology. 11, 9 p., 582113.

  Research output: Contribution to journal › Review › Research › peer-review

  Open Access

  File
  8 Citations (Scopus)

  31 Downloads (Pure)

• Inhibition of Escherichia coli chromosome replication by rifampicin treatment or during the stringent response is overcome by de novo DnaA protein synthesis

  Riber, L. & Løbner-Olesen, A., 2020, In: Molecular Microbiology. 114, 6, p. 906-919

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  13 Citations (Scopus)

  49 Downloads (Pure)

• Selection and propagation of IncP conjugative plasmids following long-term anthropogenic metal pollution in river sediments

  Cyriaque, V., Jacquiod, S. J. A., Riber, L., Abu Al-Soud, W., Gillan, D. C., Sørensen, S. J. & Wattiez, R., 2020, In: Journal of Hazardous Materials. 382, 10 p., 121173.

  Research output: Contribution to journal › Journal article › Research › peer-review
  10 Citations (Scopus)
• 2018

  An intriguing relationship between the cyclic diguanylate signaling system and horizontal gene transfer

  Madsen, J. S., Hylling, O., Jacquiod, S. J. A., Pécastaings, S., Hansen, L. H., Riber, L., Vestergaard, G. A. & Sørensen, S. J., 2018, In: ISME Journal. 12, 9, p. 2330-2334 5 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  19 Citations (Scopus)

• A Robust Proton Flux (pHlux) Assay for Studying the Function and Inhibition of the Influenza A M2 Proton Channel

  Santner, P., Martins, J. M. D. S., Laursen, J. S., Behrendt, L., Riber, L., Olsen, C. A., Arkin, I. T., Winther, J. R., Willemoës, M. & Lindorff-Larsen, K., 2018, In: Biochemistry. 57, 41, p. 5949-5956

  Research output: Contribution to journal › Journal article › Research › peer-review
  14 Citations (Scopus)

• Countermeasures to survive excessive chromosome replication in Escherichia coli

  Charbon, G., Riber, L. & Løbner-Olesen, A., 2018, In: Current Genetics. 64, 1, p. 71-79 9 p.

  Research output: Contribution to journal › Review › Research › peer-review
  13 Citations (Scopus)

• Fluorescence recovery allows theimplementation of a fluorescence reporter gene platform applicable for the detection and quantification of horizontal gene transfer in anoxic environments

  Pinilla-Redondo, R., Riber, L. & Sørensen, S. J., 2018, In: Applied and Environmental Microbiology. 84, 6, 9 p., e02507-17.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access
  14 Citations (Scopus)

• HipA-Mediated Phosphorylation of SeqA Does not Affect Replication Initiation in Escherichia coli

  Riber, L., Koch, B. M., Kruse, L. R., Germain, E. & Løbner-Olesen, A., 2 Nov 2018, In: Frontiers in Microbiology. 9, p. 1-9 2637.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  2 Citations (Scopus)

  98 Downloads (Pure)

• Long-term industrial metal contamination unexpectedly shaped diversity and activity response of sediment microbiome

  Jacquiod, S. J. A., Cyriaque, V., Riber, L., Al-Soud, W. A., Gillan, D. C., Wattiez, R. & Sørensen, S. J., 15 Feb 2018, In: Journal of Hazardous Materials. 344, p. 299-307 9 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  79 Citations (Scopus)

• Monitoring plasmid-mediated horizontal gene transfer in microbiomes: recent advances and future perspectives

  Pinilla Redondo, R., Cyriaque, V., Jacquiod, S., Sørensen, S. J. & Riber, L., 2018, In: Plasmid. 99, p. 56-67

  Research output: Contribution to journal › Review › Research › peer-review
  46 Citations (Scopus)
• 2017

  Deciphering conjugative plasmid permissiveness in wastewater microbiomes

  Jacquiod, S. J. A., Brejnrod, A. D., Milani, S. M., Abu Al-Soud, W., Sørensen, S. J. & Riber, L., Jul 2017, In: Molecular Ecology. 26, 13, p. 3556-3571 16 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  60 Citations (Scopus)

• Metal stressors consistently modulate bacterial conjugal plasmid uptake potential in a phylogenetically conserved manner

  Klümper, U., Dechesne, A., Riber, L., Brandt, K. K., Gülay, A., Sørensen, S. J. & Smets, B. F., 2017, In: The ISME Journal. 11, 1, p. 152-165 14 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access
  106 Citations (Scopus)

• Response of the bacterial community in an on-farm biopurification system, to which diverse pesticides are introduced over an agricultural season

  Holmsgaard, P. N., Dealtry, S., Dunon, V., Heuer, H., Hansen, L. H., Springael, D., Smalla, K., Riber, L. & Sørensen, S. J., Oct 2017, In: Environmental Pollution. 229, p. 854-862 9 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  29 Citations (Scopus)
• 2016

  Diverse gene functions in a soil mobilome

  Luo, W., Xu, Z., Riber, L., Hansen, L. H. & Sørensen, S. J., 2016, In: Soil Biology & Biochemistry. 101, p. 175-183 9 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  20 Citations (Scopus)

• Enhanced plasmid loss in bacterial populations exposed to the antimicrobial compound irgasan delivered from interpenetrating polymer network silicone hydrogels

  Riber, L., Burmølle, M., Alm, M., Milani, S. M., Thomsen, P., Hansen, L. H. & Sørensen, S. J., 2016, In: Plasmid. 87-88, p. 72-78 7 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  13 Citations (Scopus)

• Multiple DNA binding proteins contribute to timing of chromosome replication in E. coli

  Riber, L., Frimodt-Møller, J., Charbon, G. & Løbner-Olesen, A., 2016, In: Frontiers in Molecular Biosciences. 3, 9 p., 29.

  Research output: Contribution to journal › Review › Research › peer-review

  Open Access

  File
  32 Citations (Scopus)

  279 Downloads (Pure)

• Type 3 fimbriae encoded on plasmids are expressed from a unique promoter without affecting host motility, facilitating an exceptional phenotype that enhances conjugal plasmid transfer

  Madsen, J. S., Riber, L., Kot, W. P., Basfeld, A., Burmølle, M., Hansen, L. H. & Sørensen, S. J., 2016, In: P L o S One. 11, 9, 19 p., e0162390.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  16 Citations (Scopus)

  309 Downloads (Pure)
• 2015

  Broad host range plasmids can invade an unexpectedly diverse fraction of a soil bacterial community

  Klümper, U., Riber, L., Dechesne, A., Sannazzaro, A. I., Hansen, L. H., Sørensen, S. J. & Smets, B. F., 2015, In: I S M E Journal. 9, p. 934-945 12 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  290 Citations (Scopus)

• Phenotypic variability in bioprocessing conditions can be tracked on the basis of on-line flow cytometry and fits to a scaling law

  Baert, J., Kinet, R., Brognaux, A., Delepierre, A., Telek, S., Sørensen, S. J., Riber, L., Fickers, P. & Delvigne, F., 2015, In: Biotechnology Journal. 10, 8, p. 1316-1325 10 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  27 Citations (Scopus)
• 2014

  An improved method for including upper size range plasmids in metamobilomes

  Norman, A., Riber, L., Luo, W., Li, L., Hansen, L. H. & Sørensen, S. J., 2014, In: PLoS ONE. 9, 8, 12 p., e104405.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  30 Citations (Scopus)

  1205 Downloads (Pure)

• Exploring the immediate and long-term impact on bacterial communities in soil amended with animal and urban organic waste fertilizers using pyrosequencing and screening for horizontal transfer of antibiotic resistance

  Riber, L., Poulsen, P. H. B., Abu Al-Soud, W., Hansen, L. B. S., Bergmark, L., Brejnrod, A. D., Norman, A., Hansen, L. H., Magid, J. & Sørensen, S. J., 2014, In: F E M S Microbiology Ecology. 90, 1, p. 206-224 19 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  74 Citations (Scopus)
• 2013

  Complete genome sequence of the cystic fibrosis pathogen Achromobacter xylosoxidans NH44784-1996 complies with important pathogenic phenotypes

  Jakobsen, T. H., Hansen, M. A., Jensen, P. Ø., Hansen, L., Riber, L., Cockburn, A. P. I., Kolpen, M., Hansen, C. R., Ridderberg, W., Eickhardt-Sørensen, S. R., Hansen, M., Kerpedjiev, P., Alhede, M., Qvortrup, K., Burmølle, M., Moser, C. E., Kühl, M., Ciofu, O., Givskov, M., Sørensen, S. J. & 2 others, Høiby, N. & Bjarnsholt, T., 2013, In: P L o S One. 8, 7, 17 p., e68484.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  79 Citations (Scopus)

  3036 Downloads (Pure)

• Investigating the diversity of Pseudomonas spp. in soil using culture dependent and independent techniques

  Li, L., Abu Al-Soud, W., Bergmark, L., Riber, L., Hansen, L. H., Magid, J. & Sørensen, S. J., 2013, In: Current Microbiology. 67, 4, p. 423-430 8 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  17 Citations (Scopus)
• 2012

  Design and synthesis of a functional self-replicating, broad host range cloning vector from bits and bytes

  Riber, L., Norman, A., Sørensen, S. J. & Hansen, L. H., 2012.

  Research output: Contribution to conference › Poster › Research

• Limiting the occurrence of antimicrobial resistance through targeted interventions directed at plasmid stability

  Riber, L., Burmølle, M., Milani, S. M., Alm, M., Thomsen, P., Hansen, L. H. & Sørensen, S. J., 2012.

  Research output: Contribution to conference › Poster › Research

• When it makes sense to socialize whilst being on the move: A small EAL-domain containing protein, encoded on natural biofilm-promoting plasmids, triggers motility

  Madsen, J. S., Riber, L., Burmølle, M., Hansen, L. H. & Sørensen, S. J., 2012.

  Research output: Contribution to conference › Poster › Research
• 2011

  Attachment of Salmonella spp. to pork meat

  Hansen, T., Riber, L., Lofstrom, C. & Hoorfar, J., 2011.

  Research output: Contribution to conference › Poster › Research

• Limiting the occurrence of antimicrobial resistance through targeted interventions directed at plasmid transfer and stability

  Riber, L., Charbon, G., Burmølle, M., Hansen, L. H. & Sørensen, S. J., 2011.

  Research output: Contribution to conference › Poster › Research › peer-review

• Microarray-based genotyping of Salmonella: inter-laboratory evaluation of reproducibility and standardization potential

  Gronlund, H., Riber, L., Vigre, H., Lofstrom, C., Folling, L., Huehn, S., Malorny, B., Radstrom, P., Rudi, K. & Hoorfar, J., 2011, In: International Journal of Food Microbiology. 145, 1, p. S79-S85 7 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  5 Citations (Scopus)

• Suppressors of DnaA^ATP imposed overinitiation in Escherichia coli

  Charbon, G., Riber, L., Cohen, M., Skovgaard, O., Fujimitsu, K., Katayama, T. & Løbner-Olesen, A., 2011, In: Molecular Microbiology. 79, 4, p. 914-928 15 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  29 Citations (Scopus)
• 2010

  Centre for Anti-resistance; Limiting the occurrence of antimicrobial resistance through targeted interventions directed at plasmid transfer and stability

  Riber, L., Burmølle, M., Hansen, L. H. & Sørensen, S. J., 2010.

  Research output: Contribution to conference › Poster › Research

• Characterization of hda suppressor mutants (hsm’s)

  Bjørn, L., Charbon, G., Skovgaard, O., Riber, L. & Olesen, A. L., 2010.

  Research output: Contribution to conference › Poster › Research

• Genomic rearrangements and mutations identified by next generation sequencing

  Skovgaard, O., Bak, M., Bjørn, L., Charbon, G., Riber, L. & Olesen, A. L., 2010.

  Research output: Contribution to conference › Poster › Research

• SeqA contributes to control the amount of DnaA molecules available for initiation of replication

  Charbon, G., Riber, L., Bjørn, L., Skovgaard, O. & Olesen, A. L., 2010.

  Research output: Contribution to conference › Poster › Research

• Towards standardization of microarray-based genotyping of Salmonella

  Lofstrom, C., Grønlund, H., Riber, L., Vigre, H., Folling, L., Huehn, S., Malorny, B., Rådstrom, P., Rudi, K. & Hoorfar, J., 2010.

  Research output: Contribution to conference › Poster › Research
• 2009

  Loss of Hda activity stimulates replication initiation from I-box, but not R4 mutant origins in Escherichia coli

  Riber, L., Fujimitsu, K., Katayama, T. & Løbner-Olesen, A., 2009, In: Molecular Microbiology. 71, 1, p. 107-122

  Research output: Contribution to journal › Journal article › Research › peer-review
  35 Citations (Scopus)

• Salmonella genes involved in attachment on carcass surface and pork meat contamination

  Riber, L., Lofstrom, C. & Hoorfar, J., 2009.

  Research output: Contribution to conference › Poster › Research
• 2008

  Genome rearrangements in E. coli identified by HTP sequencing

  Skovgaard, O., Bak, M., Riber, L., Olesen, A. L. & Tommerup, N., 2008.

  Research output: Contribution to conference › Poster › Research

• Salmonella genes involved in attachment on carcass surface and pork meat contamination

  Riber, L. & Hoorfar, J., 2008.

  Research output: Contribution to conference › Poster › Research
• 2006

  Hda-mediated inactivation of the DnaA protein and dnaA gene autoregulation act in concert to ensure homeostatic maintenance of the Escherichia coli chromosome

  Riber, L., Olsson, J. A., Jensen, R. B., Skovgaard, O., Dasgupta, S., Marinus, M. G. & Løbner-Olesen, A., 2006, In: Genes & Development. 20, 15, p. 2121-2134

  Research output: Contribution to journal › Journal article › Research › peer-review
  65 Citations (Scopus)