SC2Spa: a deep learning based approach to map transcriptome to spatial origins at cellular resolution

Liao, L., Madan, E., Palma, A. M., Kim, H., Kumar, A., Bhoopathi, P., Winn, R., Trevino, J., Fisher, P., Brakebusch, C. H., Kim, G., Kim, J., Gogna, R. & Won, K. J., 2025, In: BMC Bioinformatics. 26, 1, 19 p., 148.

Research output: Contribution to journal › Journal article › Research › peer-review

Neighbor-specific gene expression revealed from physically interacting cells during mouse embryonic development

Kim, J., Rothová, M. M., Madan, E., Rhee, S., Weng, G., Palma, A. M., Liao, L., David, E., Amit, I., Hajkarim, M. C., Vudatha, V., Gutiérrez-García, A., Moreno, E., Winn, R., Trevino, J., Fisher, P. B., Brickman, J. M., Gogna, R. & Won, K. J., 2023, In: Proceedings of the National Academy of Sciences of the United States of America. 120, 2, 10 p., e2205371120.

Research output: Contribution to journal › Journal article › Research › peer-review

Flower lose, a cell fitness marker, predicts COVID-19 prognosis

Yekelchyk, M., Madan, E., Wilhelm, J., Short, K. R., Palma, A. M., Liao, L., Camacho, D., Nkadori, E., Winters, M. T., Rice, E. S., Rolim, I., Cruz-Duarte, R., Pelham, C. J., Nagane, M., Gupta, K., Chaudhary, S., Braun, T., Pillappa, R., Parker, M. S. & Menter, T. & 23 others, Matter, M., Haslbauer, J. D., Tolnay, M., Galior, K. D., Matkwoskyj, K. A., McGregor, S. M., Muller, L. K., Rakha, E. A., Lopez-Beltran, A., Drapkin, R., Ackermann, M., Fisher, P. B., Grossman, S. R., Godwin, A. K., Kulasinghe, A., Martinez, I., Marsh, C. B., Tang, B., Wicha, M. S., Won, K. J., Tzankov, A., Moreno, E. & Gogna, R., 2021, In: EMBO Molecular Medicine. 13, 11, 17 p., e13714.

Research output: Contribution to journal › Journal article › Research › peer-review