Research output per year
Research output per year
Personal profile
Fields of interest
- Methods for purification, sequenceing and analysis of virome.
- Archaeal genetic system and its viruses.
- CRISPR-Cas and other defense systems.
- The role of viruses in the gut.
- Microbiome engineering through viruses etc.
- FMT, FVT and phage therapy.
- Development of prebiotics and probiotics.
CV
Employment
|
Dec 2021 – Present |
Associate professor at section of food microbiology and fermentation, department of food science, University of Copenhagen, Denmark |
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May 2016 – Nov 2021 |
Assistant professor at, section of food microbiology and fermentation, department of food science, University of Copenhagen, Denmark |
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Jul 2011 – Apr 2016 |
Postdoc at department of biology, University of Copenhagen |
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Mar 2011 – Jun 2011 |
Research assistant at department of biology, University of Copenhagen, Denmark |
Education
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Aug 2007 – May 2011 |
PhD in microbiology and molecular genetics at department of biology, University of Copenhagen, Denmark |
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Sep 2004 – Jul 2007 |
Master student in biotechnology at state key laboratory of agricultural microbiology, Huazhong Agricultural University, Wuhan, China |
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Sep 2000 – Jun 2004 |
BSc in biological science at national training base for basic research and teaching personnel, Huazhong Agricultural University, Wuhan, China |
|
May 2002 – Jun 2004 |
Bachelor of Agronomy in landscape architecture, Huazhong Agricultural University, Wuhan, China |
Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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A single-stranded based library preparation method for virome characterization
Zhai, X., Gobbi, A., Kot, W., Krych, L., Nielsen, D. S. & Deng, L., 2024, In: Microbiome. 12, 15 p., 219.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile -
Editorial: Preparation, function and application of postbiotics
Li, Z., Peng, C., Sun, Z., Deng, L. & Lukasz, K., 2024, In: Frontiers in Microbiology. 15, 3 p., 1491550.Research output: Contribution to journal › Editorial › Research › peer-review
Open AccessFile1 Downloads (Pure) -
Escherichia coli CRISPR arrays from early life fecal samples preferentially target prophages
Dion, M. B., Shah, S. A., Deng, L., Thorsen, J., Stokholm, J., Krogfelt, K. A., Schjørring, S., Horvath, P., Allard, A., Nielsen, D. S., Petit, M. A. & Moineau, S., 2024, In: The ISME Journal. 18, 1, 9 p., wrae005.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile2 Citations (Scopus)24 Downloads (Pure) -
Purification and Up-Concentration of Bacteriophages and Viruses from Fecal Samples
Larsen, F., Jakobsen, R. R., Mao, X., Castro-Mejia, J., Deng, L. & Nielsen, D. S., 2024, Bacteriophages: Methods and Protocols. Humana Press, p. 105-110 6 p. (Methods in Molecular Biology, Vol. 2738).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
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Cesarean section induced dysbiosis promotes type 2 immunity but not oxazolone-induced dermatitis in mice
Zachariassen, L. F., Ebert, M. B. B., Mentzel, C. M. J., Deng, L., Krych, L., Nielsen, D. S., Stokholm, J. & Hansen, C. H. F., 2023, In: Gut Microbes. 15, 2, 15 p., 2271151.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile1 Citation (Scopus)29 Downloads (Pure) -
Choice of Ultrafilter Affects Recovery Rate of Bacteriophages
Larsen, F., Offersen, S. M., Li, V. R., Deng, L., Nielsen, D. S. & Rasmussen, T. S., 2023, In: Viruses. 15, 10, 12 p., 2051.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile5 Citations (Scopus)22 Downloads (Pure) -
CRISPR-Cas provides limited phage immunity to a prevalent gut bacterium in gnotobiotic mice
Rasmussen, T. S., Koefoed, A. K., Deng, L., Muhammed, M. K., Rousseau, G. M., Kot, W., Sprotte, S., Neve, H., Franz, C. M. A. P., Hansen, A. K., Vogensen, F. K., Moineau, S. & Nielsen, D. S., 2023, In: ISME Journal. 17, p. 432–442Research output: Contribution to journal › Journal article › Research › peer-review
File2 Citations (Scopus)48 Downloads (Pure) -
Expanding known viral diversity in the healthy infant gut
Shah, S. A., Deng, L., Thorsen, J., Pedersen, A. G., Dion, M. B., Castro-Mejía, J. L., Silins, R., Romme, F. O., Sausset, R., Jessen, L. E., Ndela, E. O., Hjelmsø, M., Rasmussen, M. A., Redgwell, T. A., Rodríguez, C. L., Vestergaard, G., Zhang, Y., Chawes, B., Bønnelykke, K., Sørensen, S. J. & 6 others, , 2023, In: Nature Microbiology. 8, p. 986–998Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile46 Citations (Scopus)47 Downloads (Pure)