Michael Lund Nielsen

Search results

• 2024

  ADP-ribosylome analysis reveals homogeneous DNA-damage-induced serine ADP-ribosylation across wild-type and BRCA-mutant breast cancer cell lines

  Anagho, H. A., Mullari, M., Prósz, A. G., Buch-Larsen, S. C., Cho, H., Locard-Paulet, M., Szallasi, Z. & Nielsen, M. L., 2024, In: Cell Reports. 43, 7, 23 p., 114433.

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• A quantitative and site-specific atlas of the citrullinome reveals widespread existence of citrullination and insights into PADI4 substrates

  Rebak, A. S., Hendriks, I. A., Elsborg, J. D., Buch-Larsen, S. C., Nielsen, C. H., Terslev, L., Kirsch, R., Damgaard, D., Doncheva, N. T., Lennartsson, C., Rykær, M., Jensen, L. J., Christophorou, M. A. & Nielsen, M. L., 2024, In: Nature Structural and Molecular Biology. 31, 6, p. 977–995 34 p.

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• Catalytic and noncatalytic functions of DNA polymerase κ in translesion DNA synthesis

  Sellés-Baiget, S., Ambjørn, S. M., Carli, A., Hendriks, I. A., Gallina, I., Davey, N. E., Benedict, B., Zarantonello, A., Gadi, S. A., Meeusen, B., Hertz, E. P. T., Slappendel, L., Semlow, D., Sturla, S., Nielsen, M. L., Nilsson, J., Miller, T. C. R. & Duxin, J. P., 2024, (Accepted/In press) In: Nature Structural and Molecular Biology.

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• Concerted SUMO-targeted ubiquitin ligase activities of TOPORS and RNF4 are essential for stress management and cell proliferation

  Liu, J. C. Y., Ackermann, L., Hoffmann, S., Gál, Z., Hendriks, I. A., Jain, C., Morlot, L., Tatham, M. H., McLelland, G-L., Hay, R. T., Nielsen, M. L., Brummelkamp, T., Haahr, P. & Mailand, N., 2024, In: Nature Structural and Molecular Biology. 31, 9, p. 1355–1367 32 p.

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• DNAJC9 prevents CENP-A mislocalization and chromosomal instability by maintaining the fidelity of histone supply chains

  Balachandra, V., Shrestha, R. L., Hammond, C. M., Lin, S., Hendriks, I. A., Sethi, S. C., Chen, L., Sevilla, S., Caplen, N. J., Chari, R., Karpova, T. S., McKinnon, K., Todd, M. A., Koparde, V., Cheng, K. C-C., Nielsen, M. L., Groth, A. & Basrai, M. A., 2024, In: The EMBO Journal. 43, 11, p. 2166-2197

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• Intrinsic PARG inhibitor sensitivity is mimicked by TIMELESS haploinsufficiency and rescued by nucleoside supplementation

  Coulson-Gilmer, C., Littler, S., Barnes, B. M., Brady, R. M., Anagho, H. A., Pillay, N., Dey, M., Macmorland, W., Bronder, D., Nelson, L., Tighe, A., Lin, W. H., Morgan, R. D., Unwin, R. D., Nielsen, M. L., McGrail, J. C. & Taylor, S. S., 2024, In: NAR Cancer. 6, 3, 24 p., zcae030.

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• PARP14 and PARP9/DTX3L regulate interferon-induced ADP-ribosylation

  Kar, P., Chatrin, C., Đukić, N., Suyari, O., Schuller, M., Zhu, K., Prokhorova, E., Bigot, N., Ahel, J., Elsborg, J. D., Nielsen, M. L., Clausen, T., Huet, S., Niepel, M., Sanyal, S., Ahel, D., Smith, R. & Ahel, I., 2024, In: EMBO Journal. 43, 14, p. 2929-2953

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• PARP1-dependent DNA-protein crosslink repair

  Fábián, Z., Kakulidis, E. S., Hendriks, I. A., Kühbacher, U., Larsen, N. B., Oliva-Santiago, M., Wang, J., Leng, X., Dirac-Svejstrup, A. B., Svejstrup, J. Q., Nielsen, M. L., Caldecott, K. & Duxin, J. P., 2024, In: Nature Communications. 15, 18 p., 6641.

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• Retron-Eco1 assembles NAD⁺-hydrolyzing filaments that provide immunity against bacteriophages

  Carabias, A., Camara-Wilpert, S., Mestre, M. R., Lopéz-Méndez, B., Hendriks, I. A., Zhao, R., Pape, T., Fuglsang, A., Luk, S. H. C., Nielsen, M. L., Pinilla-Redondo, R. & Montoya, G., 2024, In: Molecular Cell. 84, 11, p. 2185-2202.e12 31 p.

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• RNF212B E3 ligase is essential for crossover designation and maturation during male and female meiosis in the mouse

  Condezo, Y. B., Sainz-Urruela, R., Gomez-H, L., Salas-Lloret, D., Felipe-Medina, N., Bradley, R., Wolff, I. D., Tanis, S., Barbero, J. L., Sánchez-Martín, M., de Rooij, D., Hendriks, I. A., Nielsen, M. L., Gonzalez-Prieto, R., Cohen, P. E., Pendas, A. M. & Llano, E., 2024, In: Proceedings of the National Academy of Sciences of the United States of America. 121, 25, 12 p., e2320995121.

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• VCF1 is a p97/VCP cofactor promoting recognition of ubiquitylated p97-UFD1-NPL4 substrates

  Mirsanaye, A. S., Hoffmann, S., Weisser, M., Mund, A., Lopez Mendez, B., Typas, D., van den Boom, J., Benedict, B., Hendriks, I. A., Nielsen, M. L., Meyer, H., Duxin, J. P., Montoya, G. & Mailand, N., 2024, In: Nature Communications. 15, 1, 16 p., 2459.

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• 2023

  Characterising the RNA-binding protein atlas of the mammalian brain uncovers RBM5 misregulation in mouse models of Huntington's disease

  Mullari, M., Fossat, N., Skotte, N. H., Asenjo-Martinez, A., Humphreys, D. T., Bukh, J., Kirkeby, A., Scheel, T. K. H. & Nielsen, M. L., 2023, In: Nature Communications. 14, 20 p., 4348.

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• Characterizing ADP-Ribosylation Sites Using Af1521 Enrichment Coupled to ETD-Based Mass Spectrometry

  Anagho, H. A., Elsborg, J. D., Hendriks, I. A., Buch-Larsen, S. C. & Nielsen, M. L., 2023, Poly(ADP-Ribose) Polymerase: Methods and Protocols. Tulin, A. V. (ed.). Humana Press, p. 251-270 (Methods in Molecular Biology, Vol. 2609).

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  5 Citations (Scopus)

• Characterizing citrullination by mass spectrometry-based proteomics

  Rebak, A. S., Hendriks, I. A. & Nielsen, M. L., 2023, In: Philosophical transactions of the Royal Society of London. Series B, Biological sciences. 378, 1890, 14 p., 20220237.

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• DAXX adds a de novo H3.3K9me3 deposition pathway to the histone chaperone network

  Carraro, M., Hendriks, I. A., Hammond, C. M., Solis-Mezarino, V., Völker-Albert, M., Elsborg, J. D., Weisser, M. B., Spanos, C., Montoya, G., Rappsilber, J., Imhof, A., Nielsen, M. L. & Groth, A., 2023, In: Molecular Cell. 83, 7, p. 1075-1092.e9 28 p.

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• PARP14 is a PARP with both ADP-ribosyl transferase and hydrolase activities

  Đukić, N., Strømland, Ø., Elsborg, J. D., Munnur, D., Zhu, K., Schuller, M., Chatrin, C., Kar, P., Duma, L., Suyari, O., Rack, J. G. M., Baretić, D., Crudgington, D. R. K., Groslambert, J., Fowler, G., Wijngaarden, S., Prokhorova, E., Rehwinkel, J., Schüler, H., Filippov, D. V. & 5 others, Sanyal, S., Ahel, D., Nielsen, M. L., Smith, R. & Ahel, I., 2023, In: Science Advances. 9, 37, 19 p., eadi2687.

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• Profiling ubiquitin signalling with UBIMAX reveals DNA damage- and SCFβ-Trcp1-dependent ubiquitylation of the actin-organizing protein Dbn1

  Colding-Christensen, C. S., Kakulidis, E. S., Arroyo-Gomez, J., Hendriks, I. A., Arkinson, C., Fábián, Z., Gambus, A., Mailand, N., Duxin, J. P. & Nielsen, M. L., 2023, In: Nature Communications. 14, 19 p., 8293.

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• Regulation of Rad52-dependent replication fork recovery through serine ADP-ribosylation of PolD3

  Richards, F., Llorca-Cardenosa, M. J., Langton, J., Buch-Larsen, S. C., Shamkhi, N. F., Sharma, A. B., Nielsen, M. L. & Lakin, N. D., 2023, In: Nature Communications. 14, 1, 14 p., 4310.

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• Serine ADP-ribosylation in Drosophila provides insights into the evolution of reversible ADP-ribosylation signalling

  Fontana, P., Buch-Larsen, S. C., Suyari, O., Smith, R., Suskiewicz, M. J., Schützenhofer, K., Ariza, A., Rack, J. G. M., Nielsen, M. L. & Ahel, I., 2023, In: Nature Communications. 14, 1, 3200.

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• The SUMO–NIP45 pathway processes toxic DNA catenanes to prevent mitotic failure

  Hertz, E. P. T., Vega, I. A. D., Kruse, T., Wang, Y., Hendriks, I. A., Bizard, A. H., Eugui-Anta, A., Hay, R. T., Nielsen, M. L., Nilsson, J., Hickson, I. D. & Mailand, N., 2023, In: Nature Structural and Molecular Biology. 30, p. 1303-1313

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• Transient suppression of SUMOylation in embryonic stem cells generates embryo-like structures

  Cossec, J. C., Traboulsi, T., Sart, S., Loe-Mie, Y., Guthmann, M., Hendriks, I. A., Theurillat, I., Nielsen, M. L., Torres-Padilla, M. E., Baroud, C. N. & Dejean, A., 2023, In: Cell Reports. 42, 4, 27 p., 112380.

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• 2022

  ADP-ribosyltransferases, an update on function and nomenclature

  Lüscher, B., Ahel, I., Altmeyer, M., Ashworth, A., Bai, P., Chang, P., Cohen, M., Corda, D., Dantzer, F., Daugherty, M. D., Dawson, T. M., Dawson, V. L., Deindl, S., Fehr, A. R., Feijs, K. L. H., Filippov, D. V., Gagné, J. P., Grimaldi, G., Guettler, S., Hoch, N. C. & 27 others, Hottiger, M. O., Korn, P., Kraus, W. L., Ladurner, A., Lehtiö, L., Leung, A. K. L., Lord, C. J., Mangerich, A., Matic, I., Matthews, J., Moldovan, G. L., Moss, J., Natoli, G., Nielsen, M. L., Niepel, M., Nolte, F., Pascal, J., Paschal, B. M., Pawłowski, K., Poirier, G. G., Smith, S., Timinszky, G., Wang, Z. Q., Yélamos, J., Yu, X., Zaja, R. & Ziegler, M., 2022, In: FEBS Journal. 289, 23, p. 7399-7410

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• SCAI promotes error-free repair of DNA interstrand crosslinks via the Fanconi anemia pathway

  Schubert, L., Hendriks, I. A., Hertz, E. P. T., Wu, W., Sellés-Baiget, S., Hoffmann, S., Viswalingam, K. S., Gallina, I., Pentakota, S., Benedict, B., Johansen, J., Apelt, K., Luijsterburg, M. S., Rasmussen, S., Lisby, M., Liu, Y., Nielsen, M. L., Mailand, N. & Duxin, J. P., 2022, In: EMBO Reports. 23, 4, 20 p., e53639.

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• Waves of sumoylation support transcription dynamics during adipocyte differentiation

  Zhao, X., Hendriks, I. A., Le Gras, S., Ye, T., Ramos-Alonso, L., Nguea P, A., Lien, G. F., Ghasemi, F., Klungland, A., Jost, B., Enserink, J. M., Nielsen, M. L. & Chymkowitch, P., 2022, In: Nucleic Acids Research. 50, 3, p. 1351-1369 19 p.

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• 2021

  Applicability of Small-Molecule Inhibitors in the Study of Peptidyl Arginine Deiminase 2 (PAD2) and PAD4

  Martín Monreal, M. T., Rebak, A. S., Massarenti, L., Mondal, S., Šenolt, L., Ødum, N., Nielsen, M. L., Thompson, P. R., Nielsen, C. H. & Damgaard, D., 2021, In: Frontiers in Immunology. 12, 11 p., 716250.

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• Chemical genetics and proteome-wide site mapping reveal cysteine MARylation by PARP-7 on immune-relevant protein targets

  Rodriguez, K. M., Buch-Larsen, S. C., Kirby, I. T., Siordia, I. R., Hutin, D., Rasmussen, M., Grant, D. M., David, L. L., Matthews, J., Nielsen, M. L. & Cohen, M. S., 2021, In: eLife. 10, 35 p., e60480.

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• DNAJC9 integrates heat shock molecular chaperones into the histone chaperone network

  Hammond, C. M., Bao, H., Hendriks, I. A., Carraro, M., García-Nieto, A., Liu, Y., Reverón-Gómez, N., Spanos, C., Chen, L., Rappsilber, J., Nielsen, M. L., Patel, D. J., Huang, H. & Groth, A., 2021, In: Molecular Cell. 81, 12, p. 2533-2548

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• Identification of Protein Direct Interactome with Genetic Code Expansion and Search Engine OpenUaa

  Liu, C., Wu, T., Shu, X., Li, S-T., Wang, D. R., Wang, N., Zhou, R., Yang, H., Jiang, H., Hendriks, I. A., Gong, P., Zhang, L., Nielsen, M. L., Li, K., Wang, L. & Yang, B., 2021, In: Advanced Biology. 5, 3, 11 p., 2000308.

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  18 Citations (Scopus)

• MaxQuant. Live Enables Enhanced Selectivity and Identification of Peptides Modified by Endogenous SUMO and Ubiquitin

  Hendriks, I. A., Akimov, V., Blagoev, B. & Nielsen, M. L., 2021, In: Journal of Proteome Research. 20, 4, p. 2042-2055 14 p.

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• Mechanism and function of DNA replication-independent DNA-protein crosslink repair via the SUMO-RNF4 pathway

  Liu, J. C. Y., Kühbacher, U., Larsen, N. B., Borgermann, N., Garvanska, D. H., Hendriks, I. A., Ackermann, L., Haahr, P., Gallina, I., Guérillon, C., Branigan, E., Hay, R. T., Azuma, Y., Nielsen, M. L., Duxin, J. P. & Mailand, N., 2021, In: E M B O Journal. 40, 21 p., e107413.

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• Serine-linked PARP1 auto-modification controls PARP inhibitor response

  Prokhorova, E., Zobel, F., Smith, R., Zentout, S., Gibbs-Seymour, I., Schützenhofer, K., Peters, A., Groslambert, J., Zorzini, V., Agnew, T., Brognard, J., Nielsen, M. L., Ahel, D., Huet, S., Suskiewicz, M. J. & Ahel, I., 2021, In: Nature Communications. 12, 1, 12 p., 4055.

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• Site-specific phosphorylation of PSD-95 dynamically regulates the postsynaptic density as observed by phase separation

  Vistrup-Parry, M., Chen, X., Johansen, T. L., Bach, S., Buch-Larsen, S. C., Bartling, C. R. O., Ma, C., Clemmensen, L. S., Nielsen, M. L., Zhang, M. & Stromgaard, K., 2021, In: iScience. 24, 11, 103268.

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• Temporal and site-specific adp-ribosylation dynamics upon different genotoxic stresses

  Buch-Larsen, S. C., Rebak, A. K. L. F. S., Hendriks, I. A. & Nielsen, M. L., 2021, In: Cells. 10, 11, 16 p., 2927.

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• The regulatory landscape of the human HPF1-and ARH3-dependent ADP-ribosylome

  Hendriks, I. A., Buch-Larsen, S. C., Prokhorova, E., Elsborg, J. D., Rebak, A. K. L. F. S., Zhu, K., Ahel, D., Lukas, C., Ahel, I. & Nielsen, M. L., 2021, In: Nature Communications. 12, 1, 16 p., 5893.

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• The ubiquitin ligase RFWD3 is required for translesion DNA synthesis

  Gallina, I., Hendriks, I. A., Hoffmann, S., Larsen, N. B., Johansen, J., Colding-Christensen, C. S., Schubert, L., Sellés-Baiget, S., Fábián, Z., Kühbacher, U., Gao, A. O., Räschle, M., Rasmussen, S., Nielsen, M. L., Mailand, N. & Duxin, J. P., 2021, In: Molecular Cell. 81, 3, p. 442-458.e9 27 p.

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• Unrestrained poly-ADP-ribosylation provides insights into chromatin regulation and human disease

  Prokhorova, E., Agnew, T., Wondisford, A. R., Tellier, M., Kaminski, N., Beijer, D., Holder, J., Groslambert, J., Suskiewicz, M. J., Zhu, K., Reber, J. M., Krassnig, S. C., Palazzo, L., Murphy, S., Nielsen, M. L., Mangerich, A., Ahel, D., Baets, J., O'Sullivan, R. J. & Ahel, I., 2021, In: Molecular Cell. 81, 12, p. 2640-2655

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• 2020

  Extensive SUMO Modification of Repressive Chromatin Factors Distinguishes Pluripotent from Somatic Cells

  Theurillat, I., Hendriks, I. A., Cossec, J-C., Andrieux, A., Nielsen, M. L. & Dejean, A., 2020, In: Cell Reports. 32, 11, 20 p., 108146.

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• Mapping Physiological ADP-Ribosylation Using Activated Ion Electron Transfer Dissociation

  Buch-Larsen, S. C., Hendriks, I. A., Lodge, J. M., Rykaer, M., Furtwangler, B., Shishkova, E., Westphall, M. S., Coon, J. J. & Nielsen, M. L., 2020, In: Cell Reports. 32, 12, 17 p., 108176.

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• Multisite SUMOylation restrains DNA polymerase η interactions with DNA damage sites

  Guérillon, C., Smedegaard, S., Hendriks, I. A., Nielsen, M. L. & Mailand, N., 2020, In: Journal of Biological Chemistry. 295, p. 8350-8362

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• Treacle controls the nucleolar response to rDNA breaks via TOPBP1 recruitment and ATR activation

  Mooser, C., Symeonidou, I-E., Leimbacher, P-A., Ribeiro, A., Shorrocks, A-M. K., Jungmichel, S., Larsen, S. C., Knechtle, K., Jasrotia, A., Zurbriggen, D., Jeanrenaud, A., Leikauf, C., Fink, D., Nielsen, M. L., Blackford, A. N. & Stucki, M., 2020, In: Nature Communications. 11, 16 p., 123.

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• 2019

  An advanced strategy for comprehensive profiling of ADP-ribosylation sites using mass spectrometry-based proteomics

  Hendriks, I. A., Larsen, S. C. & Nielsen, M. L., 2019, In: Molecular and Cellular Proteomics. 18, 5, p. 1010-1026

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• Citrullination of HP1γ chromodomain affects association with chromatin

  Wiese, M., Bannister, A. J., Basu, S., Boucher, W., Wohlfahrt, K., Christophorou, M. A., Nielsen, M. L., Klenerman, D., Laue, E. D. & Kouzarides, T., 2019, In: Epigenetics & Chromatin. 12, 17 p., 21.

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• Interaction of Sox2 with RNA binding proteins in mouse embryonic stem cells

  Samudyata, Amaral, P. P., Engström, P. G., Robson, S. C., Nielsen, M. L., Kouzarides, T. & Castelo-Branco, G., 2019, In: Experimental Cell Research. 381, 1, p. 129-138 10 p.

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• PAD2-Mediated Citrullination Contributes to Efficient Oligodendrocyte Differentiation and Myelination

  Falcão, A. M., Meijer, M., Scaglione, A., Rinwa, P., Agirre, E., Liang, J., Larsen, S. C., Heskol, A., Frawley, R., Klingener, M., Varas-Godoy, M., Raposo, A. A. S. F., Ernfors, P., Castro, D. S., Nielsen, M. L., Casaccia, P. & Castelo-Branco, G., 2019, In: Cell Reports. 27, 4, p. 1090-1102.e10

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• Regulation of GLI1 by cis DNA elements and epigenetic marks

  Taylor, R., Long, J., Yoon, J. W., Childs, R., Sylvestersen, K. B., Nielsen, M. L., Leong, K-F., Iannaccone, S., Walterhouse, D. O., Robbins, D. J. & Iannaccone, P., 2019, In: DNA Repair. 79, p. 10-21 12 p.

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• SUMOylation promotes protective responses to DNA-protein crosslinks

  Borgermann, N., Ackermann, L., Schwertman, P., Hendriks, I. A., Thijssen, K., Liu, J. C., Lans, H., Nielsen, M. L. & Mailand, N., 2019, In: E M B O Journal. 38, 17 p., e101496.

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• 2018

  Arginine Methylation by PRMT2 Controls the Functions of the Actin Nucleator Cobl

  Hou, W., Nemitz, S., Schopper, S., Nielsen, M. L., Kessels, M. M. & Qualmann, B., 2018, In: Developmental Cell. 45, 2, p. 262-275.E8

  Research output: Contribution to journal › Journal article › Research › peer-review
  35 Citations (Scopus)

• Integrative Characterization of the R6/2 Mouse Model of Huntington's Disease Reveals Dysfunctional Astrocyte Metabolism

  Skotte, N. H., Andersen, J. V., Santos, A., Aldana, B. I., Willert, C. W., Nørremølle, A., Waagepetersen, H. S. & Nielsen, M. L., 2018, In: Cell Reports. 23, 7, p. 2211-2224 14 p.

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  75 Citations (Scopus)

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• Site-specific characterization of endogenous SUMOylation across species and organs

  Hendriks, I. A., Lyon, D., Su, D., Skotte, N. H., Daniel, J. A., Jensen, L. J. & Nielsen, M. L., 2018, In: Nature Communications. 9, p. 1-17 2456.

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• Systems-wide Analysis of Serine ADP-Ribosylation Reveals Widespread Occurrence and Site-Specific Overlap with Phosphorylation

  Larsen, S. C., Hendriks, I. A., Lyon, D., Jensen, L. J. & Nielsen, M. L., 2018, In: Cell Reports. 24, 9, p. 2493-2505

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  122 Citations (Scopus)

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