Research output per year
Research output per year
- 1 - 50 out of 58 results
Search results
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2024
A practical introduction to holo-omics
Odriozola, I., Rasmussen, J. A., Gilbert, M. T. P., Limborg, M. T. & Alberdi, A., 2024, In: Cell Reports Methods. 4, 7, 12 p., 100820.Research output: Contribution to journal › Review › Research › peer-review
Open AccessFile -
A zebrafish model to elucidate the impact of host genes on the microbiota
Thormar, E. A., Rasmussen, J. A., Mathiessen, H., Marana, M. H., Clausen, C. G., Hansen, M., Kodama, M., von Gersdorff Jørgensen, L. & Limborg, M. T., 2024, In: Environmental DNA. 6, 1, 20 p., e513.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile23 Downloads (Pure) -
Framework for valorizing waste- and by-products through insects and their microbiomes for food and feed
Muurmann, A. T., Banovic, M., Gilbert, M. T. P., Sogari, G., Limborg, M. T., Sicheritz-Pontén, T. & Bahrndorff, S., 2024, In: Food Research International. 187, 11 p., 114358.Research output: Contribution to journal › Review › Research › peer-review
Open AccessFile1 Citation (Scopus)6 Downloads (Pure) -
Genomic context determines the effect of DNA methylation on gene expression in the gut epithelium of Atlantic salmon (Salmo salar)
Katirtzoglou, A., Hansen, S. B., Sveier, H., Martin, M. D., Brealey, J. C. & Limborg, M. T., 2024, In: Epigenetics. 19, 1, 17 p., 2392049.Research output: Contribution to journal › Journal article › Research › peer-review
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Host-gut microbiota interactions shape parasite infections in farmed Atlantic salmon
Brealey, J. C., Kodama, M., Rasmussen, J. A., Hansen, S. B., Santos-Bay, L., Lecaudey, L. A., Hansen, M., Fjære, E., Myrmel, L. S., Madsen, L., Bernhard, A., Sveier, H., Kristiansen, K., Gilbert, M. T. P., Martin, M. D. & Limborg, M. T., 2024, In: mSystems. 9, 2, 29 p., e01043-23.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile3 Citations (Scopus)20 Downloads (Pure) -
Intestinal microbial profiles of wild Alaskan rainbow trout (Oncorhynchus mykiss) characterized by 16S rRNA amplicon data
Katirtzoglou, A., Rasmussen, J. A., Schindler, D. E. & Limborg, M. T., 2024, In: Data in Brief. 57, 8 p., 110902.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile -
Sampling fish gut microbiota - A genome-resolved metagenomic approach
Thormar, E. A., Hansen, S. B., Jørgensen, L. V. G. & Limborg, M. T., 2024, In: Ecology and Evolution. 14, 9, 16 p., e70302.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile -
Succession of microbial community composition and secondary metabolism during marine biofilm development
Bech, P. K., Jarmusch, S. A., Rasmussen, J. A., Limborg, M. T., Gram, L. & Henriksen, N. N. S. E., 2024, In: ISME communications. 4, 1, 12 p., ycae006.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile7 Downloads (Pure) -
2023
Co-diversification of an intestinal Mycoplasma and its salmonid host
Rasmussen, J. A., Kiilerich, P., Madhun, A. S., Waagbø, R., Lock, E. J. R., Madsen, L., Gilbert, M. T. P., Kristiansen, K. & Limborg, M. T., 2023, In: ISME Journal. 17, 5, p. 682-692 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile21 Citations (Scopus)29 Downloads (Pure) -
Dealing with dimensionality: the application of machine learning to multi-omics data
Feldner-Busztin, D., Nisantzis, P. F., Edmunds, S. J., Boza, G., Racimo, F., Gopalakrishnan, S., Limborg, M. T., Lahti, L. & de Polavieja, G. G., 2023, In: Bioinformatics. 39, 2, 8 p., btad021.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile28 Citations (Scopus)39 Downloads (Pure) -
Derfor kan hologenomik revolutionere fremtidens fødevareproduktion
Limborg, M. T., 2023, In: Kaskelot. 245, p. 28-30Research output: Contribution to journal › Journal article › Communication
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Intestinal epigenotype of Atlantic salmon (Salmo salar) associates with tenacibaculosis and gut microbiota composition
Hansen, S. B., Bozzi, D., Mak, S. S. T., Clausen, C. G., Nielsen, T. K., Kodama, M., Hansen, L. H., Gilbert, M. T. P. & Limborg, M. T., 2023, In: Genomics. 115, 3, 9 p., 110629.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile4 Citations (Scopus)31 Downloads (Pure) -
Metabolic effects of diet containing blue mussel (Mytilus edulis) and blue mussel-fed salmon in a mouse model of obesity
Azad, A. M., Bernhard, A., Shen, A., Myrmel, L. S., Lundebye, A-K., Lecaudey, L. A., Fjære, E., Tri Ho, Q., Sveier, H., Kristiansen, K., Limborg, M. T. & Madsen, L., 2023, In: Food Research International. 169, 11 p., 112927.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile23 Downloads (Pure) -
Unexpected fishy microbiomes
Limborg, M. T., Chua, P. Y. S. & Rasmussen, J. A., 2023, In: Nature Reviews Microbiology. 21, 6, p. 346 1 p.Research output: Contribution to journal › Comment/debate › Research › peer-review
5 Citations (Scopus) -
2022
A multi-omics approach unravels metagenomic and metabolic alterations of a probiotic and synbiotic additive in rainbow trout (Oncorhynchus mykiss)
Rasmussen, J. A., Villumsen, K. R., Ernst, M., Hansen, M., Forberg, T., Gopalakrishnan, S., Gilbert, M. T. P., Bojesen, A. M., Kristiansen, K. & Limborg, M. T., 2022, In: Microbiome. 10, 19 p., 21.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile44 Citations (Scopus)83 Downloads (Pure) -
A strategic model of a host-microbe-microbe system reveals the importance of a joint host-microbe immune response to combat stress-induced gut dysbiosis
Scheuring, I., Rasmussen, J. A., Bozzi, D. & Limborg, M. T., 2022, In: Frontiers in Microbiology. 13, 12 p., 912806.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile28 Downloads (Pure) -
Disentangling host–microbiota complexity through hologenomics
Alberdi, A., Andersen, S. B., Limborg, M. T., Dunn, R. R. & Gilbert, M. T. P., 2022, In: Nature Reviews Genetics. 23, 5, p. 281-297 17 p.Research output: Contribution to journal › Review › Research › peer-review
File45 Citations (Scopus)11 Downloads (Pure) -
Et holistisk syn på organismen og dens mikroorganismer
Pedersen, T. S., Noer, C. L. & Limborg, M. T., 2022, In: Aktuel Naturvidenskab. 2022, 3, p. 14-18Research output: Contribution to journal › Journal article › Communication
Open Access -
High throughput SNP chip as cost effective new monitoring tool for assessing invasion dynamics in the comb jelly Mnemiopsis leidyi
Pujolar, J. M., Limborg, M. T., Ehrlich, M. & Jaspers, C., 2022, In: Frontiers in Marine Science. 9, 10 p., 1019001.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile11 Downloads (Pure) -
Influence of African Swine Fever Virus on Host Gene Transcription within Peripheral Blood Mononuclear Cells from Infected Pigs
Olesen, A. S., Kodama, M., Skovgaard, K., Møbjerg, A., Lohse, L., Limborg, M. T., Bøtner, A. & Belsham, G. J., 2022, In: Viruses. 14, 10, 2147.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile1 Citation (Scopus)23 Downloads (Pure) -
Integrative analyses of probiotics, pathogenic infections and host immune response highlight the importance of gut microbiota in understanding disease recovery in rainbow trout (Oncorhynchus mykiss)
Rasmussen, J. A., Villumsen, K. R., Jørgensen, L. V. G., Forberg, T., Zuo, S., Kania, P. W., Buchmann, K., Kristiansen, K., Bojesen, A. M. & Limborg, M. T., 2022, In: Journal of Applied Microbiology. 132, 4, p. 3201-3216 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile13 Citations (Scopus)23 Downloads (Pure) -
Microbiome "Inception": an Intestinal Cestode Shapes a Hierarchy of Microbial Communities Nested within the Host
Brealey, J. C., Lecaudey, L. A., Kodama, M., Rasmussen, J. A., Sveier, H., Dheilly, N. M., Martin, M. D. & Limborg, M. T., 2022, In: mBio. 13, 3, 14 p., e00679-22.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile12 Citations (Scopus)27 Downloads (Pure) -
Plastic nanoparticles cause mild inflammation, disrupt metabolic pathways, change the gut microbiota and affect reproduction in zebrafish: A full generation multi-omics study
Marana, M. H., Poulsen, R., Thormar, E. A., Clausen, C. G., Thit, A., Mathiessen, H., Jaafar, R., Korbut, R., Hansen, A. M. B., Hansen, M., Limborg, M. T., Syberg, K. & von Gersdorff Jørgensen, L., 2022, In: Journal of Hazardous Materials. 424, Part D, 16 p., 127705.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile41 Downloads (Pure) -
2021
Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts
Rasmussen, J. A., Villumsen, K. R., Duchêne, D. A., Puetz, L. C., Delmont, T. O., Sveier, H., Jørgensen, L. V. G., Præbel, K., Martin, M. D., Bojesen, A. M., Gilbert, M. T. P., Kristiansen, K. & Limborg, M. T., 2021, In: Communications Biology. 4, 10 p., 579.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile64 Citations (Scopus)55 Downloads (Pure) -
Identification of African swine fever virus transcription within peripheral blood mononuclear cells of acutely infected pigs
Olesen, A. S., Kodama, M., Lohse, L., Accensi, F., Rasmussen, T. B., Lazov, C. M., Limborg, M. T., Gilbert, M. T. P., Bøtner, A. & Belsham, G. J., 2021, In: Viruses. 13, 11, 2333.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile12 Citations (Scopus)29 Downloads (Pure) -
Invasion genomics uncover contrasting scenarios of genetic diversity in a widespread marine invader
Jaspers, C., Ehrlich, M., Pujolar, J. M., Kunzel, S., Bayer, T., Limborg, M. T., Lombard, F., Browne, W. E., Stefanova, K. & Reusch, T. B. H., 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 51, 8 p., e2116211118.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile15 Citations (Scopus)15 Downloads (Pure) -
Salmon gut microbiota correlates with disease infection status: potential for monitoring health in farmed animals
Bozzi, D., Rasmussen, J. A., Carøe, C., Sveier, H., Nordøy, K., Gilbert, M. T. P. & Limborg, M. T., 2021, In: BMC Animal Microbiome. 3, 1, 17 p., 30.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile85 Citations (Scopus)42 Downloads (Pure) -
2020
CRISPR/Cas9 muterede zebrafisk på Frederiksberg Campus
Jørgensen, L. V. G., Marana, M. H. & Limborg, M. T., 2020Research output: Other contribution › Net publication - Internet publication › Research
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Holo-Omics: Integrated Host-Microbiota Multi-omics for Basic and Applied Biological Research
Nyholm, L., Koziol, A., Marcos, S., Botnen, A. B., Aizpurua, O., Gopalakrishnan, S., Limborg, M. T., Gilbert, M. T. P. & Alberdi, A., 2020, In: iScience. 23, 8, p. 1-16 101414.Research output: Contribution to journal › Review › Research › peer-review
Open AccessFile79 Citations (Scopus)148 Downloads (Pure) -
2019
A comparison of storage methods for gut microbiome studies in teleosts: insights from rainbow trout (Oncorhynchus mykiss)
Hildonen, M., Kodama, M., Puetz, L. C., Gilbert, M. T. P. & Limborg, M. T., 2019, In: Journal of Microbiological Methods. 160, p. 42-48Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile11 Citations (Scopus)242 Downloads (Pure) -
Parallel signatures of selection at genomic islands of divergence and the major histocompatibility complex in ecotypes of sockeye salmon across Alaska
Larson, W. A., Dann, T. H., Limborg, M. T., McKinney, G. J., Seeb, J. E. & Seeb, L. W., 2019, In: Molecular Ecology. 28, 9, p. 2254-2271Research output: Contribution to journal › Journal article › Research › peer-review
13 Citations (Scopus) -
2018
Applied Hologenomics: Feasibility and Potential in Aquaculture
Limborg, M. T., Alberdi, A., Kodama, M., Roggenbuck, M., Kristiansen, K. & Gilbert, M. T. P., 2018, In: Trends in Biotechnology. 36, 3, p. 252-264 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile46 Citations (Scopus)377 Downloads (Pure) -
Mind the gut: genomic insights to population divergence and gut microbial composition of two marine keystone species
Fietz, K., Hintze, C. O. R., Skovrind, M., Nielsen, T. K., Limborg, M. T., Krag, M. A., Palsboll, P. J., Hansen, L. H., Møller, P. R. & Gilbert, M. T. P., 2018, In: Microbiome. 6, 16 p., 82.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile27 Citations (Scopus)234 Downloads (Pure) -
Novel RAD sequence data reveal a lack of genomic divergence between dietary ecotypes in a landlocked salmonid population
Limborg, M. T., Larson, W. A., Shedd, K., Seeb, L. W. & Seeb, J. E., 2018, In: Conservation Genetics Resources. 10, 2, p. 167-171 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
4 Citations (Scopus) -
Special Issue: Coevolution of Hosts and Their Microbiome
Limborg, M. & Heeb, P., 2018, In: Genes. 9, 11, 3 p., 549.Research output: Contribution to journal › Editorial › Research
Open AccessFile13 Citations (Scopus)129 Downloads (Pure) -
2017
Genomic islands of divergence linked to ecotypic variation in sockeye salmon
Larson, W. A., Limborg, M. T., McKinney, G. J., Schindler, D. E., Seeb, J. E. & Seeb, L. W., Jan 2017, In: Molecular Ecology. 26, 2, p. 554-570 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
46 Citations (Scopus) -
Marine genomics: news and views
Oliveira Ribeiro, Â. M., Foote, A. D., Kupczok, A., Frazão, B., Limborg, M. T., Piñeiro, R., Abalde, S., Rocha, S. & Rodrigues da Fonseca, R. A., Feb 2017, In: Marine Genomics. 31, p. 1-8 8 p.Research output: Contribution to journal › Review › Research › peer-review
13 Citations (Scopus) -
Screening of duplicated loci reveals hidden divergence patterns in a complex salmonid genome
Limborg, M. T., Larson, W. A., Seeb, L. W. & Seeb, J. E., Sep 2017, In: Molecular Ecology. 26, 17, p. 4509-4522 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
15 Citations (Scopus) -
2016
An integrated linkage map reveals candidate genes underlying adaptive variation in Chinook salmon (Oncorhynchus tshawytscha)
Mckinney, G. J., Seeb, L. W., Larson, W. A., Gomez-Uchida, D., Limborg, M. T., Brieuc, M. S. O., Everett, M. V., Naish, K. A., Waples, R. K. & Seeb, J. E., 2016, In: Molecular Ecology Resources. 16, 3, p. 769-783 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
38 Citations (Scopus) -
Identification of multiple QTL hotspots in sockeye salmon (Oncorhynchus nerka) using genotyping-by-sequencing and a dense linkage map
Larson, W. A., McKinney, G. J., Limborg, M. T., Everett, M. V., Seeb, L. W. & Seeb, J. E., 2016, In: Journal of Heredity. 107, 2, p. 122-133 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
32 Citations (Scopus) -
Recombination patterns reveal information about centromere location on linkage maps
Limborg, M. T., McKinney, G. J., Seeb, L. W. & Seeb, J. E., 2016, In: Molecular Ecology Resources. 16, 3, p. 655-661 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open Access13 Citations (Scopus) -
Sorting duplicated loci disentangles complexities of polyploid genomes masked by genotyping by sequencing
Limborg, M. T., Seeb, L. W. & Seeb, J. E., 2016, In: Molecular Ecology. 25, 10, p. 2117-2129 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
34 Citations (Scopus) -
2015
Effects of crossovers between homeologs on inheritance and population genomics in polyploid-derived salmonid fishes
Allendorf, F. W., Bassham, S., Cresko, W. A., Limborg, M. T., Seeb, L. W. & Seeb, J. E., 2015, In: Journal of Heredity. 106, 3, p. 217-227 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
81 Citations (Scopus) -
Gene-associated markers can assign origin in a weakly structured fish, Atlantic herring
Bekkevold, D., Helyar, S. J., Limborg, M. T., Nielsen, E. E., Hemmer-Hansen, J., Clausen, L. A. W. & Carvalho, G. R., 2015, In: ICES Journal of Marine Science. 72, 6, p. 1790-1801 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
46 Citations (Scopus) -
Linkage mapping reveals strong chiasma interference in sockeye salmon: implications for interpreting genomic data
Limborg, M. T., Waples, R. K., Allendorf, F. W. & Seeb, J. E., 2015, In: G3: Genes, Genomes, Genetics (Bethesda). 5, 11, p. 2463-2473 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open Access17 Citations (Scopus) -
Response to May and Delany: we never said Wright was wrong
Allendorf, F. W., Bassham, S., Cresko, W. A., Limborg, M. T., Seeb, L. W. & Seeb, J. E., 2015, In: Journal of Heredity. 106, 6, p. 767-768 2 p.Research output: Contribution to journal › Comment/debate › Research
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2014
Parallel signatures of selection in temporally isolated lineages of pink salmon
Seeb, L. W., Waples, R. K., Limborg, M. T., Warheit, K. I., Pascal, C. E. & Seeb, J. E., 2014, In: Molecular Ecology. 23, 10, p. 2473-2485 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
17 Citations (Scopus) -
Temporally isolated lineages of pink salmon reveal unique signatures of selection on distinct pools of standing genetic variation
Limborg, M. T., Waples, R. K., Seeb, J. E. & Seeb, L. W., 2014, In: Journal of Heredity. 105, 6, p. 835-845 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
25 Citations (Scopus) -
The effects of Medieval dams on genetic divergence and demographic history in brown trout populations
Hansen, M. M., Limborg, M. T., Ferchaud, A-L. & Pujolar, J-M., 2014, In: BMC Evolutionary Biology. 14, 14 p., 122.Research output: Contribution to journal › Journal article › Research › peer-review
Open Access28 Citations (Scopus) -
2012
Environmental selection on transcriptome-derived SNPs in a high gene flow marine fish, the Atlantic herring (Clupea harengus)
Limborg, M. T., Helyar, S. J., de Bruyn, M., Taylor, M. I., Eg Nielsen, E., Ogden, R., Carvalho, G. R. & Bekkevold, D., 2012, In: Molecular Ecology. 21, 15, p. 3686-3703 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
190 Citations (Scopus)