Rute Andreia Rodrigues da Fonseca

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• 2025

  Roman Atlantic garum: DNA confirms sardine use and population continuity in north-western Iberia

  Themudo, G. E., Fernández-Fernández, A., Abad, P. V., Nóvoa, A. A. R., Fernández-Rodríguez, C., de Agüero, E.G.-G., da Fonseca, R. R. & Campos, P. F., Jul 2025, (E-pub ahead of print) In: Antiquity. 16 p.

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• Root restriction accelerates genomic target identification in quinoa under controlled conditions

  Visintainer, D., Sørensen, N. F., Chen, M., Trinh, M. D. L., da Fonseca, R. R., Fondevilla, S. & Lopez-Marques, R. L., 2025, In: Physiologia Plantarum. 177, 2, 15 p., e70223.

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• 2024

  A new nuclear phylogeny of the tea family (Theaceae) unravels rapid radiations in genus Camellia

  Yan, Y., da Fonseca, R. R., Rahbek, C., Borregaard, M. K. & Davis, C. C., 2024, In: Molecular Phylogenetics and Evolution. 196, 12 p., 108089.

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  4 Citations (Scopus)

• Complexity of avian evolution revealed by family-level genomes

  Stiller, J., Feng, S., Chowdhury, A.-A., Rivas-González, I., Duchêne, D. A., Fang, Q., Deng, Y., Kozlov, A., Stamatakis, A., Claramunt, S., Nguyen, J. M. T., Ho, S. Y. W., Faircloth, B. C., Haag, J., Houde, P., Cracraft, J., Balaban, M., Mai, U., Chen, G. & Gao, R. & 32 others, Zhou, C., Xie, Y., Huang, Z., Cao, Z., Yan, Z., Ogilvie, H. A., Nakhleh, L., Lindow, B., Morel, B., Fjeldså, J., Hosner, P. A., da Fonseca, R. R., Petersen, B., Tobias, J. A., Székely, T., Kennedy, J. D., Hart Reeve, A., Liker, A., Stervander, M., Antunes, A., Tietze, D. T., Bertelsen, M. F., Lei, F., Rahbek, C., Graves, G. R., Schierup, M. H., Warnow, T., Braun, E. L., Gilbert, M. T. P., Jarvis, E. D., Mirarab, S. & Zhang, G., 2024, In: Nature. 629, p. 851–860 10 p.

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• Fertilizer regime and cultivar affect barley growth and rhizobiome composition

  Kindtler, N. L., Sheikh, S., Richardy, J., Krogh, E., Maccario, L., Vestergård, M., da Fonseca, R. R., Ekelund, F. & Laursen, K. H., 2024, In: Applied Soil Ecology. 198, 13 p., 105384.

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• Introgression and disruption of migration routes have shaped the genetic integrity of wildebeest populations

  Liu, X., Lin, L., Sinding, M. H. S., Bertola, L. D., Hanghøj, K., Quinn, L., Garcia-Erill, G., Rasmussen, M. S., Schubert, M., Pečnerová, P., Balboa, R. F., Li, Z., Heaton, M. P., Smith, T. P. L., Pinto, R. R., Wang, X., Kuja, J., Brüniche-Olsen, A., Meisner, J. & Santander, C. G. & 8 others, Ogutu, J. O., Masembe, C., da Fonseca, R. R., Muwanika, V., Siegismund, H. R., Albrechtsen, A., Moltke, I. & Heller, R., 2024, In: Nature Communications. 15, 1, 16 p., 2921.

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• Population Genomics Reveals the Underlying Structure of the Small Pelagic European Sardine and Suggests Low Connectivity within Macaronesia

  da Fonseca, R. R., Campos, P. F., Rey-Iglesia, A., Barroso, G. V., Bergeron, L. A., Nande, M., Tuya, F., Abidli, S., Pérez, M., Riveiro, I., Carrera, P., Jurado-Ruzafa, A., Santamaría, M. T. G., Faria, R., Machado, A. M., Fonseca, M. M., Froufe, E. & Castro, L. F. C., 2024, In: Genes. 15, 2, 15 p., 170.

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• Site-directed genotype screening for elimination of antinutritional saponins in quinoa seeds identifies TSARL1 as a master controller of saponin biosynthesis selectively in seeds

  Trinh, M. D. L., Visintainer, D., Günther, J., Østerberg, J. T., Rodrigues da Fonseca, R. A., Fondevilla, S., Moog, M. W., Luo, G., Nørrevang, A. F., Crocoll, C., Nielsen, P. V., Jacobsen, S.-E., Wendt, T., Bak, S., López-Marqués, R. L. & Palmgren, M., 2024, In: Plant Biotechnology Journal. 22, 8, p. 2216-2234 19 p.

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• 2023

  Iron age genomic data from Althiburos – Tunisia renew the debate on the origins of African taurine cattle

  Ginja, C., Guimarães, S., da Fonseca, R. R., Rasteiro, R., Rodríguez-Varela, R., Simões, L. G., Sarmento, C., Belarte, M. C., Kallala, N., Torres, J. R., Sanmartí, J., Arruda, A. M., Detry, C., Davis, S., Matos, J., Götherström, A., Pires, A. E. & Valenzuela-Lamas, S., 2023, In: iScience. 26, 7, 17 p., 107196.

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• 2022

  Conservation genomics of the endangered Seychelles Magpie-Robin (Copsychus sechellarum): a unique insight into the history of a precious endemic bird

  Cavill, E. L., Gopalakrishnan, S., Puetz, L. C., Ribeiro, Â. M., Mak, S. S. T., da Fonseca, R. R., Pacheco, G., Dunlop, B., Accouche, W., Shah, N., Zora, A., Calabrese, L., Genner, M., Jones, G., Guo, C., Zhang, G. & Gilbert, M. T. P., 2022, In: Ibis. 164, 2, p. 396-410 15 p.

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  5 Citations (Scopus)

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• 2021

  Comparative genomics provides insights into the aquatic adaptations of mammals

  Yuan, Y., Zhang, Y., Zhang, P., Liu, C., Wang, J., Gao, H., Rus Hoelzel, A., Seim, I., Lv, M., Lin, M., Dong, L., Gao, H., Yang, Z., Caruso, F., Lin, W., Da Fonseca, R. R., Wang, D., Wang, X., Rasmussen, M. H. & Liu, M. & 21 others, Zheng, J., Zhao, L., Campos, P. F., Kang, H., Iversen, M., Song, Y., Guo, X., Guo, J., Qin, Y., Pan, S., Xu, Q., Meng, L., A, Y., Liu, S., Ming-Yuen Lee, S., Liu, X., Xu, X., Yang, H., Fan, G., Wang, K. & Li, S., 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 37, 9 p., e2106080118.

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• High genetic diversity and low differentiation reflect the ecological versatility of the African leopard

  Pečnerová, P., Garcia-Erill, G., Liu, X., Nursyifa, C., Waples, R. K., Santander, C. G., Quinn, L., Frandsen, P., Meisner, J., Stæger, F. F., Rasmussen, M. S., Brüniche-Olsen, A., Jørgensen, C. H. F., da Fonseca, R. R., Siegismund, H. R., Albrechtsen, A., Heller, R., Moltke, I. & Hanghøj, K., 2021, In: Current Biology. 31, 9, p. 1862-1871, e1-e5

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• Response of an Afro-Palearctic bird migrant to glaciation cycles

  Thorup, K., Pedersen, L., da Fonseca, R. R., Naimi, B., Nogués-Bravo, D., Krapp, M., Manica, A., Willemoes, M., Sjöberg, S., Feng, S., Chen, G., Rey-Iglesia, A., Campos, P. F., Beyer, R., Araújo, M. B., Hansen, A. J., Zhang, G., Tøttrup, A. P. & Rahbek, C., 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 52, 8 p., e2023836118.

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• The Crown Pearl: a draft genome assembly of the European freshwater pearl mussel Margaritifera margaritifera (Linnaeus, 1758)

  Gomes-dos-Santos, A., Lopes-Lima, M., Machado, A. M., Ramos, A. M., Usié, A., Bolotov, I. N., Vikhrev, I. V., Breton, S., Castro, L. F. C., da Fonseca, R. R., Geist, J., Österling, M. E., Prié, V., Teixeira, A., Gan, H. M., Simakov, O. & Froufe, E., 2021, In: DNA research : an international journal for rapid publication of reports on genes and genomes. 28, 2, 10 p., dsab002.

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• Using UCEs to track the influence of sea‐level change on leafy seadragon populations

  Stiller, J., da Fonseca, R. R., Alfaro, M. E., Faircloth, B. C., Wilson, N. G. & Rouse, G. W., 2021, In: Molecular Ecology. p. 1364-1380

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• 2020

  Adaptive venom evolution and toxicity in octopods is driven by extensive novel gene formation, expansion, and loss

  Whitelaw, B. L., Cooke, I. R., Finn, J., da Fonseca, R. R., Ritschard, E. A., Gilbert, M. T. P., Simakov, O. & Strugnell, J. M., 2020, In: GigaScience. 9, 11, 15 p., giaa120.

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  14 Citations (Scopus)

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• A draft genome sequence of the elusive giant squid, Architeuthis dux

  da Fonseca, R. R., Couto, A., Machado, A. M., Brejova, B., Albertin, C. B., Silva, F., Gardner, P., Baril, T., Hayward, A., Campos, A., Ribeiro, Â. M., Barrio-Hernandez, I., Hoving, H.-J., Tafur-Jimenez, R., Chu, C., Frazão, B., Petersen, B., Peñaloza, F., Musacchia, F. & Alexander, G. C. & 24 others, Osório, H., Winkelmann, I., Simakov, O., Rasmussen, S., Rahman, M. Z., Pisani, D., Vinther, J., Jarvis, E., Zhang, G., Strugnell, J. M., Castro, L. F. C., Fedrigo, O., Patricio, M., Li, Q., Rocha, S., Antunes, A., Wu, Y., Ma, B., Sanges, R., Vinar, T., Blagoev, B., Sicheritz-Pontén, T., Nielsen, R. & Gilbert, M. T. P., 2020, In: GigaScience. 9, 1, 12 p., giz152.

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• Cartilaginous fishes offer unique insights into the evolution of the nuclear receptor gene repertoire in gnathostomes

  Fonseca, E., Machado, A. M., Vilas-Arrondo, N., Gomes-dos-Santos, A., Verissimo, A., Esteves, P., Almeida, T., Themudo, G., Ruivo, R., Perez, M., da Fonseca, R., Santos, M. M., Froufe, E., Roman-Marcote, E., Venkatesh, B. & Castro, L. F. C., 2020, In: General and Comparative Endocrinology. 295, 10 p., 113527.

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  17 Citations (Scopus)

• Declining genetic diversity of European honeybees along the twentieth century

  Themudo, G. E., Rey-Iglesia, A., Tascón, L. R., Jensen, A. B., da Fonseca, R. R. & Campos, P. F., 29 Jun 2020, In: Scientific Reports. 10, 12 p., 10520.

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  48 Citations (Scopus)

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• Dense sampling of bird diversity increases power of comparative genomics

  Feng, S., Stiller, J., Deng, Y., Armstrong, J., Fang, Q., Hart Reeve, A., Xie, D., Chen, G., Guo, C., Faircloth, B. C., Petersen, B., Wang, Z., Zhou, Q., Diekhans, M., Chen, W., Andreu-Sánchez, S., Margaryan, A., Howard, J. T., Parent, C. & Pacheco, G. & 130 others, Sinding, M.-H. S., Puetz, L., Cavill, E., Ribeiro, Â. M., Eckhart, L., Fjeldså, J., Hosner, P. A., Brumfield, R. T., Christidis, L., Bertelsen, M. F., Sicheritz-Ponten, T., Tietze, D. T., Robertson, B. C., Song, G., Borgia, G., Claramunt, S., Lovette, I. J., Cowen, S. J., Njoroge, P., Dumbacher, J. P., Ryder, O. A., Fuchs, J., Bunce, M., Burt, D. W., Cracraft, J., Meng, G., Hackett, S. J., Ryan, P. G., Jønsson, K. A., Jamieson, I. G., da Fonseca, R. R., Braun, E. L., Houde, P., Mirarab, S., Suh, A., Hansson, B., Ponnikas, S., Sigeman, H., Stervander, M., Frandsen, P. B., van der Zwan, H., van der Sluis, R., Visser, C., Balakrishnan, C. N., Clark, A. G., Fitzpatrick, J. W., Bowman, R., Chen, N., Cloutier, A., Sackton, T. B., Edwards, S. V., Foote, D. J., Shakya, S. B., Sheldon, F. H., Vignal, A., Soares, A. E. R., Shapiro, B., González-Solís, J., Ferrer-Obiol, J., Rozas, J., Riutort, M., Tigano, A., Friesen, V., Dalén, L., Urrutia, A. O., Székely, T., Liu, Y., Campana, M. G., Corvelo, A., Fleischer, R. C., Rutherford, K. M., Gemmell, N. J., Dussex, N., Mouritsen, H., Thiele, N., Delmore, K., Liedvogel, M., Franke, A., Hoeppner, M. P., Krone, O., Fudickar, A. M., Milá, B., Ketterson, E. D., Fidler, A. E., Friis, G., Parody-Merino, Á. M., Battley, P. F., Cox, M. P., Lima, N. C. B., Prosdocimi, F., Parchman, T. L., Schlinger, B. A., Loiselle, B. A., Blake, J. G., Lim, H. C., Day, L. B., Fuxjager, M. J., Baldwin, M. W., Braun, M. J., Wirthlin, M., Dikow, R. B., Ryder, T. B., Camenisch, G., Keller, L. F., Dacosta, J. M., Hauber, M. E., Louder, M. I. M., Witt, C. C., McGuire, J. A., Mudge, J., Megna, L. C., Carling, M. D., Wang, B., Taylor, S. A., Del-Rio, G., Aleixo, A., Vasconcelos, A. T. R., Mello, C. V., Weir, J. T., Haussler, D., Li, Q., Yang, H., Wang, J., Lei, F., Rahbek, C., Gilbert, M. T. P., Graves, G. R., Jarvis, E. D., Paten, B. & Zhang, G., 2020, In: Nature. 587, 7833, p. 252-257

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  277 Citations (Scopus)

• Evolution of the extracytoplasmic function σ factor protein family

  Pinto, D. & Da fonseca, R. R., 2020, In: NAR Genomics and Bioinformatics. 2, 1, 13 p., lqz026.

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• Link Your Sites (LYS) Scripts: Automated Search of Protein Structures and Mapping of Sites Under Positive Selection Detected by PAML

  Moreta, L. S. & da Fonseca, R. R., 2020, In: Evolutionary Biology. 47, 3, p. 240-245 6 p.

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• Liver transcriptome resources of four commercially exploited teleost species

  Machado, A. M., Muñoz-Merida, A., Fonseca, E., Veríssimo, A., Pinto, R., Felício, M., da Fonseca, R. R., Froufe, E. & Castro, L. F. C., 2020, In: Scientific Data. 7, 9 p., 214.

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• Losing Genes: The Evolutionary Remodeling of Cetacea Skin

  Espregueira Themudo, G., Alves, L. Q., Machado, A. M., Lopes-Marques, M., da Fonseca, R. R., Fonseca, M., Ruivo, R. & Castro, L. F. C., 2020, In: Frontiers in Marine Science. 7, 592375.

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• 2019

  31º South: The physiology of adaptation to arid conditions in a passerine bird

  Ribeiro, Â. M., Puetz, L., Pattinson, N. B., Dalén, L., Deng, Y., Zhang, G., da Fonseca, R. R., Smit, B. & Gilbert, M. T. P., 2019, In: Molecular Ecology. 28, 16, p. 3709-3721 13 p.

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  12 Citations (Scopus)

• Complete Inactivation of Sebum-Producing Genes Parallels the Loss of Sebaceous Glands in Cetacea

  Lopes-Marques, M., Machado, A. M., Alves, L. Q., Fonseca, M. M., Barbosa, S., Sinding, M.-H. S., Rasmussen, M. H., Iversen, M. R., Bertelsen, M. F., Campos, P. F., da Fonseca, R., Ruivo, R. & Castro, L. F. C., 2019, In: MOLECULAR BIOLOGY AND EVOLUTION . 36, 6, p. 1270-1280

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• Consequences of breed formation on patterns of genomic diversity and differentiation: the case of highly diverse peripheral Iberian cattle

  da Fonseca, R. R., Urena, I., Afonso, S., Pires, A. E., Jørsboe, E., Chikhi, L. & Ginja, C., 2019, In: BMC Genomics. 20, p. 1-13 334.

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• Identifying loci under positive selection in complex population histories

  Refoyo-Martínez, A., da Fonseca, R. R., Halldórsdóttir, K., Árnason, E., Mailund, T. & Racimo, F., 2019, In: Genome Research. 29, 9, p. 1506-1520

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  32 Citations (Scopus)

• Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits

  Chen, L., Qin, Q., Jiang, Y., Wang, K., Lin, Z., Li, Z., Bibi, F., Yang, Y., Wang, J., Nie, W., Su, W., Liu, G., Li, Q., Fu, W., Pan, X., Liu, C., Yang, J., Zhang, C., Yin, Y. & Wang, Y. & 32 others, Zhao, Y., Zhang, C., Wang, Z., Qin, Y., Liu, W., Wang, B., Ren, Y., Zhang, R., Zeng, Y., da Fonseca, R. R., Wei, B., Li, R., Wan, W., Zhao, R., Zhu, W., Wang, Y., Duan, S., Gao, Y., Zhang, Y. E., Chen, C., Hvilsom, C., Epps, C. W., Chemnick, L. G., Doug, Y., Mirarab, S., Siegismund, H. R., Ryder, O. A., Gilbert, M. T. P., Lewin, H. A., Zhang, G., Heller, R. & Wang, W., 2019, In: Science. 364, 6446, p. 1152-

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  309 Citations (Scopus)

• Population genomic footprints of environmental pollution pressure in natural populations of the Mediterranean mussel

  Ribeiro, Â. M., Canchaya, C. A., Penaloza, F., Galindo, J. & da Fonseca, R. R., Jun 2019, In: Marine Genomics. 45, p. 11-15

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  5 Citations (Scopus)
• 2018

  A resource for sustainable management: De novo assembly and annotation of the liver transcriptome of the Atlantic chub mackerel, Scomber colias

  Machado, A. M., Felício, M., Fonseca, E., da Fonseca, R. R. & Castro, L. F. C., 2018, In: Data in Brief. 18, p. 276-284 9 p.

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• Genome sequence and effectorome of Moniliophthora perniciosa and Moniliophthora roreri subpopulations

  Barbosa, C. S., Rodrigues da Fonseca, R. A., Batista, T. M., Barreto, M. A., Argolo, C. S., de Carvalho, M. R., Jordao do Amaral, D. O., de Andrade Silva, E. M., Arevalo-Gardini, E., Hidalgo, K. S., Franco, G. R., Pirovani, C. P., Micheli, F. & Gramacho, K. P., 3 Jul 2018, In: BMC Genomics. 19, 12 p., 509.

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• "Out of the Can": A Draft Genome Assembly, Liver Transcriptome, and Nutrigenomics of the European Sardine, Sardina pilchardus

  Machado, A. M., Tørresen, O. K., Kabeya, N., Couto, A., Petersen, B., Felicio, M., Campos, P. F., Fonseca, E., Bandarra, N., Lopes-Marques, M., Ferraz, R., Ruivo, R., Fonseca, M. M., Jentoft, S., Monroig, Ó., da Fonseca, R. R. & Castro, L. F. C., 2018, In: Genes. 9, 10, p. 1-13 485.

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• 2017

  Marine genomics: news and views

  Oliveira Ribeiro, Â. M., Foote, A. D., Kupczok, A., Frazão, B., Limborg, M. T., Piñeiro, R., Abalde, S., Rocha, S. & Rodrigues da Fonseca, R. A., Feb 2017, In: Marine Genomics. 31, p. 1-8 8 p.

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  15 Citations (Scopus)

• Molecular clocks indicate turnover and diversification of modern coleoid cephalopods during the Mesozoic Marine Revolution

  Tanner, A. R., Fuchs, D., Winkelmann, I. E. H., Gilbert, T., Pankey, M. S., Oliveira Ribeiro, Â. M., Kocot, K. M., Halanych, K. M., Oakley, T. H., Rodrigues da Fonseca, R. A., Pisani, D. & Vinther, J., 15 Mar 2017, In: Proceedings of the Royal Society B: Biological Sciences. 284, 1850, 7 p., 20162818.

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  105 Citations (Scopus)

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• Natural selection shaped the rise and fall of passenger pigeon genomic diversity

  Murray, G. G. R., Soares, A. E. R., Novak, B. J., Schaefer, N. K., Cahill, J. A., Baker, A. J., Demboski, J. R., Doll, A., Rodrigues da Fonseca, R. A., Fulton, T. L., Gilbert, T., Heintzman, P. D., Letts, B., McIntosh, G., O'Connell, B. L., Peck, M., Pipes, M.-L., Rice, E. S., Santos, K. M. & Sohrweide, A. G. & 4 others, Vohr, S. H., Corbett-Detig, R. B., Green, R. E. & Shapiro, B., 17 Nov 2017, In: Science. 358, 6365, p. 951-954 4 p.

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  93 Citations (Scopus)
• 2016

  Combined transcriptomic and proteomic analysis of the posterior salivary gland from the southern blue-ringed octopus and the southern sand octopus

  Whitelaw, B. L., Strugnell, J. M., Faou, P., Rodrigues da Fonseca, R. A., Hall, N. E., Norman, M., Finn, J. & Cooke, I. R., 2016, In: Journal of Proteome Research. 15, 9, p. 3284-3297 14 p.

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  28 Citations (Scopus)

• Comparative analysis of complete mitochondrial genomes suggests that relaxed purifying selection is driving high nonsynonymous evolutionary rate of the NADH2 gene in whitefish (Coregonus ssp.)

  Jacobsen, M. W., Rodrigues da Fonseca, R. A., Bernatchez, L. & Hansen, M. M., 2016, In: Molecular Phylogenetics and Evolution. 95, p. 161-170 10 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  53 Citations (Scopus)

• Next-generation biology: sequencing and data analysis approaches for non-model organisms

  Rodrigues da Fonseca, R. A., Albrechtsen, A., Themudo, G. E. C., Ramos Madrigal, J., Sibbesen, J. A., Sørensen, L. M., Zepeda Mendoza, M. L., Campos, P., Heller, R. & Pereira, R., 2016, In: Marine Genomics. 30, p. 3-13

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  133 Citations (Scopus)

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• 2015

  Ancient genomics

  Der Sarkissian, C., Allentoft, M. E., Avila Arcos, M. D. C., Barnett, R., Campos, P. F., Cappellini, E., Ermini, L., Fernandez Garcia, R., Rodrigues da Fonseca, R. A., Ginolhac, A., Hansen, A. J., Jónsson, H., Korneliussen, T. S., Margaryan, A., Martin, M. D., Moreno Mayar, J. V., Raghavan, M., Rasmussen, M., Sandoval Velasco, M. & Schroeder, H. & 6 others, Schubert, M., Seguin-Orlando, A., Wales, N., Gilbert, M. T. P., Willerslev, E. & Orlando, L. A. A., 2015, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 370, 1660, 12 p., 20130387.

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  91 Citations (Scopus)

  1203 Downloads (Pure)

• A refined model of the genomic basis for phenotypic variation in vertebrate hemostasis

  Ribeiro, Â. M., Zepeda Mendoza, M. L., Bertelsen, M. F., Kristensen, A. T., Jarvis, E. D., Gilbert, M. T. P. & Rodrigues da Fonseca, R. A., 2015, In: B M C Evolutionary Biology. 15, 8 p., 124.

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  15 Citations (Scopus)

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• Phylogenomic analyses data of the avian phylogenomics project

  Jarvis, E. D., Mirarab, S., Aberer, A. J., Li, B., Houde, P., Li, C., Ho, S. Y. W., Faircloth, B. C., Nabholz, B., Howard, J. T., Suh, A., Weber, C. C., Rodrigues da Fonseca, R. A., Alfaro Nuñez, L. A., Narula, N., Liu, L., Burt, D., Ellegren, H., Edwards, S. V. & Stamatakis, A. & 7 others, Mindell, D. P., Cracraft, J., Braun, E. L., Warnow, T., Wang, J., Gilbert, M. T. P. & Zhang, G., 2015, In: GigaScience. 4, 9 p., 4.

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  61 Citations (Scopus)

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• Proteomic profiling of gill GSTs in Mytilus galloprovincialis from the North of Portugal and Galicia evidences variations at protein isoform level with a possible relation with water quality

  Azevedo, C. C., Guzman-Guillen, R., Martins, J. C., Osório, H., Vasconcelos, V., Rodrigues da Fonseca, R. A. & Campos, A., 2015, In: Marine Environmental Research. 110, p. 152-161 10 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  24 Citations (Scopus)

• Shotgun analysis of the marine mussel Mytilus edulis hemolymph proteome and mapping the innate immunity elements

  Campos, A., Apraiz, I., Rodrigues da Fonseca, R. A. & Cristobal, S., 2015, In: Proteomics. 15, 23-24, p. 4021-4029 9 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  35 Citations (Scopus)

• The origin and evolution of maize in the Southwestern United States: [+ erratum]

  Rodrigues da Fonseca, R. A., Smith, B. D., Wales, N., Cappellini, E., Skoglund, P., Fumagalli, M., Samaniego Castruita, J. A., Carøe, C., Avila Arcos, M. D. C., Hufnagel, D. E., Korneliussen, T. S., Garrett Vieira, F. J., Jakobsson, M., Arriaza, B., Willerslev, E., Nielsen, R., Hufford, M. B., Albrechtsen, A., Ross-Ibarra, J. & Gilbert, M. T. P., 2015, In: Nature Plants. 1, 5 p., 14003.

  Research output: Contribution to journal › Letter › peer-review
  142 Citations (Scopus)
• 2014

  Cephalopods in neuroscience: regulations, research and the 3Rs

  Fiorito, G., Affuso, A., Anderson, D. B., Basil, J., Bonnaud, L., Botta, G., Cole, A., D'Angelo, L., De Girolamo, P., Dennison, N., Dickel, L., Di Cosmo, A., Di Cristo, C., Gestal, C., Rodrigues da Fonseca, R. A., Grasso, F., Kristiansen, T., Kuba, M., Maffucci, F. & Manciocco, A. & 15 others, Mark, F. C., Melillo, D., Osorio, D., Palumbo, A., Perkins, K., Ponte, G., Raspa, M., Shashar, N., Smith, J., Smith, D., Sykes, A., Villanueva, R., Tublitz, N., Zullo, L. & Andrews, P., 2014, In: Invertebrate Neuroscience. 14, 1, p. 13-36 24 p.

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  130 Citations (Scopus)

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• Comparative genomics reveals insights into avian genome evolution and adaptation

  Zhang, G., Li, C., Li, Q., Li, B., Larkin, D. M., Lee, C., Storz, J. F., Antunes, A., Greenwold, M. J., Meredith, R. W., Ödeen, A., Cui, J., Zhou, Q., Xu, L., Pan, H., Wang, Z., Jin, L., Zhang, P., Hu, H. & Yang, W. & 85 others, Hu, J., Xiao, J., Yang, Z., Liu, Y., Xie, Q., Yu, H., Lian, J., Wen, P., Zhang, F., Li, H., Zeng, Y., Xiong, Z., Liu, S., Zhou, L., Huang, Z., An, N., Wang, J., Zheng, Q., Xiong, Y., Wang, G., Wang, B., Wang, J., Fan, Y., Rodrigues da Fonseca, R. A., Alfaro Nuñez, L. A., Schubert, M., Orlando, L. A. A., Mourier, T., Howard, J. T., Ganapathy, G., Pfenning, A., Whitney, O., Rivas, M. V., Hara, E., Smith, J., Farré, M., Narayan, J., Slavov, G., Romanov, M. N., Borges, R., MacHado, J. P., Khan, I., Springer, M. S., Gatesy, J., Hoffmann, F. G., Opazo, J. C., Håstad, O., Sawyer, R. H., Kim, H., Kim, K. W., Kim, H. J., Cho, S., Li, N., Huang, Y., Bruford, M. W., Zhan, X., Dixon, A., Bertelsen, M. F., Derryberry, E., Warren, W., Wilson, R. K., Li, S., Ray, D. A., Green, R. E., O'Brien, S. J., Griffin, D., Johnson, W. E., Haussler, D., Ryder, O. A., Willerslev, E., Graves, G. R., Alström, P., Fjeldså, J., Mindell, D. P., Edwards, S. V., Braun, E. L., Rahbek, C., Burt, D. W., Houde, P., Zhang, Y., Yang, H., Wang, J., Jarvis, E. D., Gilbert, M. T. P. & Wang, J., 2014, In: Science. 346, 6215, p. 1311-1320 10 p.

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  770 Citations (Scopus)

• DivA: detection of non-homologous and very divergent regions in protein sequence alignments

  Zepeda Mendoza, M. L., Nygaard, S. & Rodrigues da Fonseca, R. A., 2014, In: BMC Research Notes. 7, 806, 6 p., 806.

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• Proteomic Profiling of Cytosolic Glutathione Transferases from Three Bivalve Species: Corbicula fluminea, Mytilus galloprovincialis and Anodonta cygnea

  Martins, J. C., Campos, A., Osorio, H., Rodrigues da Fonseca, R. A. & Vasconcelos, V., 2014, In: International Journal of Molecular Sciences (Online). 15, 2, p. 1887-1900 14 p.

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• The elusive nature of adaptive mitochondrial DNA evolution of an Arctic lineage prone to frequent introgression

  Melo-Ferreira, J., Vilela, J., Fonseca, M. M., Rodrigues da Fonseca, R. A., Boursot, P. & Alves, P. C., 2014, In: Genome Biology and Evolution. 6, 4, p. 886-896 11 p.

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  83 Citations (Scopus)

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