Weria Pezeshkian

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• 2024

  Bending of a lipid membrane edge by annexin A5 trimers

  Pandey, M. P., Telles de Souza, P. C., Pezeshkian, W. & Khandelia, H., 16 Apr 2024, In: Biophysical Journal. 123, 8, p. 1006-1014 9 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  1 Citation (Scopus)

• Mesoscale simulation of biomembranes with FreeDTS

  Pezeshkian, W. & Ipsen, J. H., 16 Jan 2024, In: Nature Communications. 15, 1, 10 p., 548.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  5 Citations (Scopus)

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• Physics-Based Protein Networks Might Recover Effectful Mutations─a Case Study on Cathepsin G

  Schuhmann, F., Bordallo, H. N. & Pezeshkian, W., 21 Oct 2024, In: Journal of Physical Chemistry B. 128, p. 10043-10050 8 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

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• Shape of the membrane neck around a hole during plasma membrane repair

  Klenow, M. B., Vigsø, M. S., Pezeshkian, W., Nylandsted, J., Lomholt, M. A. & Simonsen, A. C., 2 Jul 2024, In: Biophysical Journal. 123, 13, p. 1827-1837 11 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

• There and back again: bridging meso- and nano-scales to understand lipid vesicle patterning

  Cornet, J., Coulonges, N., Pezeshkian, W., Penissat-mahaut, M., Desgrez-dautet, H., Marrink, S. J., Destainville, N., Chavent, M. & Manghi, M., 22 May 2024, In: Soft Matter. 20, p. 4998-5013 16 p.

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• 2023

  Annexin proteins involved in plasma membrane repair reshape a membrane edge: Direct evidence from molecular simulations

  Pandey, M. P., Pezeshkian, W. & Khandelia, H., 2023, In: Biophysical Journal. 122, 3S1, p. 323a 1 p.

  Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

• Close, but not too close: a mesoscopic description of (a)symmetry and membrane shaping mechanisms

  Ruhoff, V. T., Bendix, P. M. & Pezeshkian, W., 16 Jan 2023, In: Emerging topics in life sciences. 7, 1, p. 81-93 13 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  3 Citations (Scopus)

  31 Downloads (Pure)

• Inferring mechanical properties of the SARS-CoV-2 virus particle with nano-indentation tests and numerical simulations

  Nonn, A., Kiss, B., Pezeshkian, W., Tancogne-Dejean, T., Cerrone, A., Kellermayer, M., Bai, Y., Li, W. & Wierzbicki, T., 8 Oct 2023, In: Journal of the Mechanical Behavior of Biomedical Materials. 148, 15 p., 106153.

  Research output: Contribution to journal › Journal article › Research › peer-review
  3 Citations (Scopus)

• Mesoscale simulations: an indispensable approach to understand biomembranes

  Duncan, A. & Pezeshkian, W., 21 Feb 2023, In: Biophysical Journal. 122, 11, p. 1883-1889 7 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  11 Citations (Scopus)

• Molecular architecture and dynamics of SARS-CoV-2 envelope by integrative modeling

  Pezeshkian, W., Grunewald, F., Narykov, O., Lu, S., Arkhipova, V., Solodovnikov, A., Wassenaar, T. A., Marrink, S. J. & Korkin, D., 6 Apr 2023, In: Structure. 31, 4, p. 492-50 20 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  23 Citations (Scopus)
• 2022

  Coarse-grained simulations of curvature induced lipid sorting in complex membranes

  Konig, M., Pezeshkian, W. & Marrink, S. J., 2022, In: Biophysical Journal. 121, 3, p. 309A-309A 1 p.

  Research output: Contribution to journal › Conference article › Research › peer-review

• Martini 3 Coarse-Grained Force Field for Carbohydrates

  Grünewald, F., Punt, M. H., Jefferys, E. E., Vainikka, P., König, M., Virtanen, V., Meyer, T. A., Pezeshkian, W., Gormley, A., Karonen, M., Sansom, M. S. P., Souza, P. C. T. & Marrink, S., 7 Nov 2022, In: Journal of Chemical Theory and Computation. 18, 12, p. 7555-7569 15 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  26 Citations (Scopus)

  11 Downloads (Pure)

• Strength in numbers: effect of protein crowding on the shape of cell membranes

  Ruhoff, V. T., Moreno-Pescador, G., Pezeshkian, W. & Bendix, P. M., 31 Oct 2022, In: Biochemical Society Transactions. 50, 5, p. 1257-1267 11 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  5 Citations (Scopus)

  54 Downloads (Pure)

• Synthetic Membrane Shaper for Controlled Liposome Deformation

  De Franceschi, N., Pezeshkian, W., Fragasso, A., Bruininks, B. M. H., Tsai, S., Marrink, S. J. & Dekker, C., 28 Nov 2022, In: ACS Nano. 17, p. 966-978 13 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  17 Citations (Scopus)

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• 2021

  Annexin A4 trimers are recruited by high membrane curvatures in giant plasma membrane vesicles

  Florentsen, C. D., Kamp-Sonne, A., Moreno-Pescador, G., Pezeshkian, W., Hakami Zanjani, A. A., Khandelia, H., Nylandsted, J. & Bendix, P. M., 2021, In: Soft Matter. 17, 2, p. 308-318 11 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  29 Citations (Scopus)

  30 Downloads (Pure)

• A synthetic membrane shaper for controlled liposome deformation

  Pezeshkian, W., 23 Dec 2021, In: bioRxiv.

  Research output: Contribution to journal › Journal article › Research

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• Capturing Membrane Phase Separation by Dual Resolution Molecular Dynamics Simulations

  Liu, Y., de Vries, A. H., Pezeshkian, W. & Marrink, S. J., 14 Sep 2021, In: Journal of Chemical Theory and Computation. 17, 9, p. 5876-5884 9 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  13 Citations (Scopus)

  8 Downloads (Pure)

• Ceramide structure dictates glycosphingolipid nanodomain assembly and function

  Arumugam, S., Schmieder, S., Pezeshkian, W., Becken, U., Wunder, C., Chinnapen, D., Ipsen, J. H., Kenworthy, A. K., Lencer, W., Mayor, S. & Johannes, L., 16 Jun 2021, In: Nature Communications. 12, 1, 12 p., 3675.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  33 Citations (Scopus)

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• Computational Approaches to Explore Bacterial Toxin Entry into the Host Cell

  Pezeshkian, W., Shillcock, J. C. & Ipsen, J. H., 28 Jul 2021, In: Toxins. 13, 7, 9 p., 449.

  Research output: Contribution to journal › Review › Research › peer-review

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  4 Citations (Scopus)

  9 Downloads (Pure)

• Creasing of flexible membranes at vanishing tension

  Pezeshkian, W. & Ipsen, J. H., 16 Apr 2021, In: Physical Review E. 103, 4, 5 p., 041001.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  3 Citations (Scopus)

  10 Downloads (Pure)

• Long chain sphingomyelin depletes cholesterol from the cytoplasmic leaflet in asymmetric lipid membranes

  Karlsen, M. L., Bruhn, D. S., Pezeshkian, W. & Khandelia, H., 8 Jul 2021, In: RSC Advances. 11, 37, p. 22677-22682 6 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  5 Citations (Scopus)

  9 Downloads (Pure)

• Molecular architecture of SARS-CoV-2 envelope by integrative modeling

  Pezeshkian, W., 15 Sep 2021, In: bioRxiv.

  Research output: Contribution to journal › Journal article › Research

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  12 Downloads (Pure)

• Simulating realistic membrane shapes

  Pezeshkian, W. & Marrink, S. J., 1 Aug 2021, In: Current Opinion in Cell Biology. 71, p. 103-111 9 p.

  Research output: Contribution to journal › Review › Research › peer-review

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  42 Citations (Scopus)

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• 2020

  Backmapping triangulated surfaces to coarse-grained membrane models

  Pezeshkian, W., Konig, M., Wassenaar, T. A. & Marrink, S. J., 8 May 2020, In: Nature Communications. 11, 1, 9 p., 2296.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  91 Citations (Scopus)

  8 Downloads (Pure)

• Coupling Coarse-Grained to Fine-Grained Models via Hamiltonian Replica Exchange

  Liu, Y., Pezeshkian, W., Barnoud, J., de Vries, A. H. & Marrink, S. J., 11 Aug 2020, In: Journal of Chemical Theory and Computation. 16, 8, p. 5313-5322 10 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  8 Citations (Scopus)

  6 Downloads (Pure)

• Dual Resolution Membrane Simulations Using Virtual Sites

  Liu, Y., De Vries, A. H., Barnoud, J., Pezeshkian, W., Melcr, J. & Marrink, S. J., 14 May 2020, In: Journal of Physical Chemistry B. 124, 19, p. 3944-3953 10 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  23 Citations (Scopus)

  8 Downloads (Pure)
• 2019

  A Multi-Scale Approach to Membrane Remodeling Processes

  Pezeshkian, W., Konig, M., Marrink, S. J. & Ipsen, J. H., 23 Jul 2019, In: Frontiers in Molecular Biosciences. 6, 7 p., 59.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  17 Citations (Scopus)

  8 Downloads (Pure)

• Fluctuations and conformational stability of a membrane patch with curvature inducing inclusions

  Pezeshkian, W. & Ipsen, J. H., 28 Dec 2019, In: Soft Matter. 15, 48, p. 9974-9981 8 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  19 Citations (Scopus)
• 2018

  Clustering on Membranes: Fluctuations and More

  Johannes, L., Pezeshkian, W., Ipsen, J. H. & Shillcock, J. C., May 2018, In: Trends in Cell Biology. 28, 5, p. 405-415 11 p.

  Research output: Contribution to journal › Review › Research › peer-review
  55 Citations (Scopus)

• Lipid Configurations from Molecular Dynamics Simulations

  Pezeshkian, W., Khandelia, H. & Marsh, D., 24 Apr 2018, In: Biophysical Journal. 114, 8, p. 1895-1907 13 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  15 Citations (Scopus)

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• The role of caveolin-1 in lipid droplets and their biogenesis

  Pezeshkian, W., Chevrot, G. & Khandelia, H., Mar 2018, In: Chemistry and Physics of Lipids. 211, p. 93-99 7 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  16 Citations (Scopus)
• 2017

  Cholera toxin B subunit induces local curvature on lipid bilayers

  Pezeshkian, W., Nabo, L. J. & Ipsen, J. H., Nov 2017, In: FEBS Open Bio. 7, 11, p. 1638-1645 8 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  36 Citations (Scopus)

  6 Downloads (Pure)

• Mechanism of Shiga Toxin Clustering on Membranes

  Pezeshkian, W., Gao, H., Arumugam, S., Becken, U., Bassereau, P., Florent, J-C., Ipsen, J. H., Johannes, L. & Shillcock, J. C., 1 Jan 2017, In: ACS Nano. 11, 1, p. 314-324 11 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  84 Citations (Scopus)

• Membrane Tubulation in Lipid Vesicles Triggered by the Local Application of Calcium Ions

  Doosti, B. A., Pezeshkian, W., Bruhn, D. S., Ipsen, J. H., Khandelia, H., Jeffries, G. D. M. & Lobovidna, T., 17 Oct 2017, In: Langmuir. 33, 41, p. 11010-11017 8 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  49 Citations (Scopus)
• 2016

  Membrane invagination induced by Shiga toxin B-subunit: from molecular structure to tube formation

  Pezeshkian, W., Hansen, A. G., Johannes, L., Khandelia, H., Shillcock, J. C., Kumar, P. B. S. & Ipsen, J. H., 2016, In: Soft Matter. 12, 23, p. 5164-5171 8 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  72 Citations (Scopus)

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• 2015

  The effects of globotriaosylceramide tail saturation level on bilayer phases

  Pezeshkian, W., Chaban, V. V., Johannes, L., Shillcock, J., Ipsena, J. H. & Khandelia, H., 2015, In: Soft Matter. 11, 7, p. 1352-1361 10 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  19 Citations (Scopus)

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• 2012

  Distribution of counterions and interaction between two similarly charged dielectric slabs: Roles of charge discreteness and dielectric inhomogeneity

  Pezeshkian, W., Nikoofard, N., Norouzi, D., Mohammad-Rafiee, F. & Fazli, H., 28 Jun 2012, In: Physical Review E. 85, 6, 11 p., 061925.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  13 Citations (Scopus)

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