Witold Piotr Kot

Research output

Research output per year 2010 2020 2021 2023 2024

• 1724 Citations
• 76 Journal article
• 2 Poster
• 1 Ph.D. thesis
• 1 Book chapter
• 4 More
  • 1 Conference abstract in proceedings
  • 1 Conference abstract for conference
  • 1 Conference abstract in journal
  • 1 Letter

Research output per year

Research output per year

Search results

• 2024

  A novel genus of Pectobacterium bacteriophages display broad host range by targeting several species of Danish soft rot isolates

  Pedersen, J. S., Carstens, A. B., Rothgard, M. M., Roy, C., Viry, A., Papudeshi, B., Kot, W., Hille, F., Franz, C. M. A. P., Edwards, R. & Hansen, L. H., 2024, In: Virus Research. 347, 11 p., 199435.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  4 Downloads (Pure)

• Insights into the circular: The cryptic plasmidome and its derived antibiotic resistome in the urban water systems

  Yu, Z., He, W., Klincke, F., Madsen, J. S., Kot, W., Hansen, L. H., Quintela-Baluja, M., Balboa, S., Dechesne, A., Smets, B., Nesme, J. & Sørensen, S. J., 2024, In: Environment International. 183, 12 p., 108351.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  3 Citations (Scopus)

  27 Downloads (Pure)

• Randomised, Placebo-Controlled Investigation of the Impact of Probiotic Consumption on Gut Microbiota Diversity and the Faecal Metabolome in Seniors

  van Zanten, G. C., Madsen, A. L., Yde, C. C., Krych, L., Yeung, N., Saarinen, M. T., Kot, W., Jensen, H. M., Rasmussen, M. A., Ouwehand, A. C. & Nielsen, D. S., 2024, In: Microorganisms. 12, 4, 18 p., 796.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

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  1 Citation (Scopus)

  13 Downloads (Pure)
• 2023

  A novel Queuovirinae lineage of Pseudomonas aeruginosa phages encode dPreQ₀ DNA modifications with a single GA motif that provide restriction and CRISPR Cas₉ protection in vitro

  Olsen, N. S., Nielsen, T. K., Cui, L., Dedon, P., Neve, H., Hansen, L. H. & Kot, W., 2023, In: Nucleic Acids Research. 51, 16, 14 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  3 Citations (Scopus)

  19 Downloads (Pure)

• Complete Genome Sequences of Three Lactiplantibacillus plantarum Strains Isolated from Traditional Iranian Raw Milk Motal Cheese

  Fatemizadeh, S. S., Krych, L., Castro-Mejía, J. L., Stefanova, D. V., Kot, W., Najafi, M. B. H. & Nielsen, D. S., 2023, In: Microbiology Resource Announcements. 12, 1, 3 p., e0047922.

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  33 Downloads (Pure)

• CRISPR-Cas provides limited phage immunity to a prevalent gut bacterium in gnotobiotic mice

  Rasmussen, T. S., Koefoed, A. K., Deng, L., Muhammed, M. K., Rousseau, G. M., Kot, W., Sprotte, S., Neve, H., Franz, C. M. A. P., Hansen, A. K., Vogensen, F. K., Moineau, S. & Nielsen, D. S., 2023, In: ISME Journal. 17, p. 432–442

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  46 Downloads (Pure)

• Detection of nucleotide modifications in bacteria and bacteriophages: Strengths and limitations of current technologies and software

  Nielsen, T. K., Forero-Junco, L. M., Kot, W., Moineau, S., Hansen, L. H. & Riber, L., 2023, In: Molecular Ecology. 32, 6, p. 1236-1247 12 p.

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  28 Downloads (Pure)

• Four novel Curtobacterium phages isolated from environmental samples

  Alanin, K. W. S., Olsen, N. S., Djurhuus, A. M., Carstens, A. B., Nielsen, T. K., Rothgardt, M. M., Russel, A. M., Wagner, N., Lametsch, R., Bak, F., Hennessy, R. C., Nicolaisen, M. H., Hansen, L. H. & Kot, W., 2023, In: Archives of Virology. 168, 3

  Research output: Contribution to journal › Journal article › Research › peer-review

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• Genetic rearrangements in Pseudomonas amygdali pathovar aesculi shape coronatine plasmids

  Nielsen, T. K., Winther-Have, C. S., Thomsen, I. M., Jackson, R. W., Rabiey, M., Hennessy, R. C., Bak, F., Kot, W., Nicolaisen, M. H., Carstens, A. B. & Hansen, L. H., 2023, In: Infection, Genetics and Evolution. 113, 10 p., 105486.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  18 Downloads (Pure)

• The impact of storage buffer and storage conditions on fecal samples for bacteriophage infectivity and metavirome analyses

  Zhai, X., Castro-Mejía, J. L., Gobbi, A., Aslampaloglou, A., Kot, W., Nielsen, D. S. & Deng, L., 2023, In: Microbiome. 11, 12 p., 193.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  4 Citations (Scopus)

  13 Downloads (Pure)

• Three novel Erwinia billingiae phages isolated from organic waste represent three new genera

  Alanin, K. W. S., Olsen, N. S., Djurhuus, A. M., Carstens, A. B., Nielsen, T. K., Wagner, N., Lametsch, R., Bak, F., Hennessy, R. C., Nicolaisen, M. H., Kot, W. & Hansen, L. H., 2023, In: Archives of Virology. 168, 7 p., 71.

  Research output: Contribution to journal › Journal article › Research › peer-review

  File

• Used Nasogastric Feeding Tubes from Neonates Contain Infant-Specific Bacterial Profiles

  Meinich Juhl, S., Angeliki Krogfelt, K., Kot, W., Sandris Nielsen, D. & Krych, L., 2023, In: Microorganisms. 11, 6, 11 p., 1365.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  2 Citations (Scopus)

  8 Downloads (Pure)

• Widespread and largely unknown prophage activity, diversity, and function in two genera of wheat phyllosphere bacteria

  Dougherty, P. E., Nielsen, T. K., Riber, L., Lading, H. H., Forero-Junco, L. M., Kot, W., Raaijmakers, J. M. & Hansen, L. H., 2023, In: ISME Journal. 17, 12, p. 2415-2425

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  16 Downloads (Pure)
• 2022

  Bacteriophages Roam the Wheat Phyllosphere

  Forero-junco, L. M., Alanin, K. W. S., Djurhuus, A. M., Kot, W., Gobbi, A. & Hansen, L. H., 2022, In: Viruses. 14, 2, 13 p., 244.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  40 Downloads (Pure)

• Donor-dependent fecal microbiota transplantation efficacy against necrotizing enterocolitis in preterm pigs

  Hui, Y., Vestergaard, G., Deng, L., Kot, W. P., Thymann, T., Brunse, A. & Nielsen, D. S., 2022, In: npj Biofilms and Microbiomes. 8, 1, 12 p., 48.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  9 Citations (Scopus)

  63 Downloads (Pure)

• Fecal filtrate transplantation protects against necrotizing enterocolitis

  Brunse, A., Deng, L., Pan, X., Hui, Y., Castro Mejia, J. L., Kot, W., Nguyen, D. N., Secher, J. B-M., Nielsen, D. S. & Thymann, T., 2022, In: The ISME Journal. 16, p. 686–694

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  74 Citations (Scopus)

  66 Downloads (Pure)

• From Alpha Diversity to Zzz: Interactions among sleep, the brain, and gut microbiota in the first year of life

  Schoch, S. F., Castro-Mejía, J. L., Krych, L., Leng, B., Kot, W., Kohler, M., Huber, R., Rogler, G., Biedermann, L., Walser, J. C., Nielsen, D. S. & Kurth, S., 2022, In: Progress in Neurobiology. 209, 11 p., 102208.

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  22 Citations (Scopus)

  33 Downloads (Pure)

• Marked gut microbiota dysbiosis and increased imidazole propionate are associated with a NASH Göttingen Minipig model

  Lützhøft, D. O., Sinioja, T., Christoffersen, B., Jakobsen, R. R., Geng, D., Ahmad, H. F. B., Straarup, E. M., Pedersen, K. M., Kot, W., Pedersen, H. D., Cirera, S., Hyötyläinen, T., Nielsen, D. S. & Hansen, A. K., 2022, In: BMC Microbiology. 22, 1, 287.

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  7 Citations (Scopus)

  38 Downloads (Pure)

• Maturation of sleep-gut microbiome dynamics in infancy and links to behavioral development

  Kurth, S., Schoch, S., Castro-Mejia, J., Krych, L., Leng, B., Kot, W., Kohler, M., Huber, R., Rogler, G., Biedermann, L., Walser, J-C. & Nielsen, D., 2022, In: Journal of Sleep Research. 31, S1, p. 93-94 2 p., O194/P949.

  Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

• Parasite-Probiotic Interactions in the Gut: Bacillus sp. and Enterococcus faecium Regulate Type-2 Inflammatory Responses and Modify the Gut Microbiota of Pigs During Helminth Infection

  Myhill, L. J., Stolzenbach, S., Mejer, H., Krych, L., Jakobsen, S. R., Kot, W., Skovgaard, K., Canibe, N., Nejsum, P., Nielsen, D. S., Thamsborg, S. M. & Williams, A. R., 2022, In: Frontiers in Immunology. 12, 793260.

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  11 Citations (Scopus)

  42 Downloads (Pure)

• Salmonella phage akira, infecting selected Salmonella enterica Enteritidis and Typhimurium strains, represents a new lineage of bacteriophages

  Olsen, N. S., Lametsch, R., Wagner, N., Hansen, L. H. & Kot, W., 2022, In: Archives of Virology. 167, p. 2049–2056

  Research output: Contribution to journal › Journal article › Research › peer-review
  4 Citations (Scopus)

• The phytonutrient cinnamaldehyde limits intestinal inflammation and enteric parasite infection

  Zhu, L., Andersen-Civil, A. I. S., Myhill, L. J., Thamsborg, S. M., Kot, W., Krych, L., Nielsen, D. S., Blanchard, A. & Williams, A. R., 2022, In: Journal of Nutritional Biochemistry. 100, 10 p., 108887.

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• 2021

  Administration of bovine milk oligosaccharide to weaning gnotobiotic mice inoculated with a simplified infant type microbiota

  Jakobsen, L. M. A., Sundekilde, U. K., Andersen, H. J., Kot, W., Mejia, J. L. C., Nielsen, D. S., Hansen, A. K. & Bertram, H. C., 2021, In: Microorganisms. 9, 5, 1003.

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• An improved direct metamobilome approach increases the detection of larger-sized circular elements across kingdoms

  Alanin, K. W. S., Jørgensen, T. S., Browne, P. D., Petersen, B., Riber, L., Kot, W. & Hansen, L. H., 2021, In: Plasmid. 115, 11 p., 102576.

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  16 Downloads (Pure)

• An Oligosaccharide Rich Diet Increases Akkermansia spp. Bacteria in the Equine Microbiota

  Lindenberg, F. C., Lützhøft, D. O., Krych, L., Fielden, J., Kot, W., Frøkiær, H., van Galen, G., Nielsen, D. S. & Hansen, A. K., 2021, In: Frontiers in Microbiology. 12, 666039.

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  77 Downloads (Pure)

• Enterococcus phage Nonaheksakonda infecting clinical isolates of Enterococcus faecalis represents a new lineage in the family Siphoviridae

  Olsen, N. S., Nielsen, K. J., Plöger, M., Kot, W. & Hansen, L. H., 2021, In: Archives of Virology. 166, p. 593-599 7 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  1 Citation (Scopus)

• High throughput in vitro characterization of pectins for pig(let) nutrition

  Wiese, M., Hui, Y., Holck, J., Sejberg, J. J. P., Daures, C., Maas, E., Kot, W., Borne, J. M., Khakimov, B., Thymann, T. & Nielsen, D. S., 2021, In: BMC Animal Microbiome. 3, 15 p., 69.

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  7 Citations (Scopus)

  25 Downloads (Pure)

• Impaired skeletal muscle hypertrophy signaling and amino acid deprivation response in Apoe knockout mice with an unhealthy lipoprotein distribution

  Agergaard, J., Zillmer, M. C. F., Castro-Mejía, J. L., Mertz, K., Kot, W., Højfeldt, G., van Hall, G., Nielsen, D. S., Schjerling, P. & Holm, L., 2021, In: Scientific Reports. 11, 15 p., 16423.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  1 Citation (Scopus)

  29 Downloads (Pure)

• Inter-vendor variance of enteric eukaryotic DNA viruses in specific pathogen free C57BL/6N mice

  Rasmussen, T. S., Jakobsen, R. R., Castro-Mejía, J. L., Kot, W., Thomsen, A. R., Vogensen, F. K., Nielsen, D. S. & Hansen, A. K., 2021, In: Research in Veterinary Science. 136, p. 1-5 5 p.

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  7 Citations (Scopus)

  15 Downloads (Pure)

• Metagenomic analysis of a keratin-degrading bacterial consortium provides insight into the keratinolytic mechanisms

  Kang, D., Huang, Y., Nesme, J., Herschend, J., Jacquiod, S., Kot, W., Hansen, L. H., Lange, L. & Sørensen, S. J., 2021, In: Science of the Total Environment. 761, 9 p., 143281.

  Research output: Contribution to journal › Journal article › Research › peer-review
  25 Citations (Scopus)

• Metaviromes Reveal the Dynamics of Pseudomonas Host-Specific Phages Cultured and Uncultured by Plaque Assay

  Alanin, K. W. S., Junco, L. M. F., Jørgensen, J. B., Nielsen, T. K., Rasmussen, M. A., Kot, W. & Hansen, L. H., 2021, In: Viruses. 13, 6, 21 p.

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  5 Citations (Scopus)

  29 Downloads (Pure)

• Novel virocell metabolic potential revealed in agricultural soils by virus-enriched soil metagenome analysis

  Braga, L. P. P., Coutinho, F. H., Amgarten, D. E., Kot, W., Hansen, L., Setubal, J. C. & Philippot, L., 2021, In: Environmental Microbiology Reports. 13, 3, p. 348-354 7 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

• Partial substitution of meat with insect (Alphitobius diaperinus) in a carnivore diet changes the gut microbiome and metabolome of healthy rats

  Lanng, S. K., Zhang, Y., Christensen, K. R., Hansen, A. K., Nielsen, D. S., Kot, W. & Bertram, H. C., 2021, In: Foods. 10, 8, 14 p., 1814.

  Research output: Contribution to journal › Journal article › Research › peer-review

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• Subclinical necrotizing enterocolitis-induced systemic immune suppression in neonatal preterm pigs

  Ren, S., Pan, X., Hui, Y., Kot, W., Gao, F., Sangild, P. T. & Nguyen, D. N., 2021, In: American Journal of Physiology - Gastrointestinal and Liver Physiology. 321, 1, p. G18-G28

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  8 Citations (Scopus)

  14 Downloads (Pure)

• Supplementation of a lacto-fermented rapeseed-seaweed blend promotes gut microbial- and gut immune-modulation in weaner piglets

  Hui, Y., Tamez-Hidalgo, P., Cieplak, T., Satessa, G. D., Kot, W., Kjærulff, S., Nielsen, M. O., Nielsen, D. S. & Krych, L., 2021, In: Journal of Animal Science and Biotechnology. 12, 14 p., 85.

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  21 Citations (Scopus)

  40 Downloads (Pure)
• 2020

  A Humanized Diet Profile May Facilitate Colonization and Immune Stimulation in Human Microbiota-Colonized Mice

  Moreno-Indias, I., Lundberg, R., Krych, L., Metzdorff, S. B., Kot, W., Sørensen, D. B., Nielsen, D. S., Hansen, C. H. F. & Hansen, A. K., 2020, In: Frontiers in Microbiology. 11, 15 p., 1336.

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  10 Citations (Scopus)

  94 Downloads (Pure)

• A New High-Throughput Screening Method for Phages: Enabling Crude Isolation and Fast Identification of Diverse Phages with Therapeutic Potential

  Olsen, N. S., Hendriksen, N. B., Hansen, L. H. & Kot, W., 2020, In: PHAGE: Therapy, Applications, and Research. 1, 3, p. 137-148

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  30 Citations (Scopus)

  27 Downloads (Pure)

• A Rare, Virulent Clostridium perfringens Bacteriophage Susfortuna Is the First Isolated Bacteriophage in a New Viral Genus

  Pedersen, J. S., Kot, W., Plöger, M., Lametsh, R., Neve, H., Franz, C. M. A. P. & Hansen, L. H., 2020, In: PHAGE: Therapy, Applications, and Research. 1, 4, p. 230-236 7 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

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• Characterization of the Vaginal DNA Virome in Health and Dysbiosis

  Jakobsen, R. R., Haahr, T., Humaidan, P., Jensen, J. S., Kot, W. P., Castro-Mejia, J. L., Deng, L., Leser, T. D. & Nielsen, D. S., 2020, In: Viruses. 12, 10, 13 p., 1143.

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  34 Citations (Scopus)

  78 Downloads (Pure)

• Detection of preQ₀ deazaguanine modifications in bacteriophage CAjan DNA using Nanopore sequencing reveals same hypermodification at two distinct DNA motifs

  Kot, W., Olsen, N. S., Nielsen, T. K., Hutinet, G., de Crecy-Lagard, V., Cui, L., Dedon, P. C., Carstens, A. B., Moineau, S., Swairjo, M. A. & Hansen, L. H., 2020, In: Nucleic Acids Symposium Series. 48, 18, p. 10383-10396 14 p.

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  20 Citations (Scopus)

  51 Downloads (Pure)

• Exploring the Remarkable Diversity of Culturable Escherichia coli Phages in the Danish Wastewater Environment

  Olsen, N. S., Forero-Junco, L., Kot, W. & Hansen, L. H., 2020, In: Viruses. 12, 9, 21 p., 986.

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  28 Citations (Scopus)

  47 Downloads (Pure)

• Faecal virome transplantation decreases symptoms of type 2 diabetes and obesity in a murine model

  Rasmussen, T. S., Mentzel, C. M. J., Kot, W., Castro-Mejiá, J. L., Zuffa, S., Swann, J. R., Hansen, L. H., Vogensen, F. K., Hansen, A. K. & Nielsen, D. S., 2020, In: Gut. 69, 12, p. 2122-2130 9 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  144 Citations (Scopus)

• GC bias affects genomic and metagenomic reconstructions, underrepresenting GC-poor organisms

  Browne, P. D., Nielsen, T. K., Kot, W., Aggerholm, A., Gilbert, M. T. P., Puetz, L., Rasmussen, M., Zervas, A. & Hansen, L. H., 2020, In: GigaScience. 9, 2, 14 p.

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  83 Citations (Scopus)

  96 Downloads (Pure)

• Housing temperature influences exercise training adaptations in mice

  Raun, S. H., Henriquez-Olguín, C., Karavaeva, I., Ali, M., Møller, L. L. V., Kot, W., Castro-Mejía, J. L., Nielsen, D. S., Gerhart-Hines, Z., Richter, E. A. & Sylow, L., 2020, In: Nature Communications. 11, 16 p., 1560.

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  51 Citations (Scopus)

  143 Downloads (Pure)

• Impact of phages on soil bacterial communities and nitrogen availability under different assembly scenarios

  Braga, L. P. P., Spor, A., Kot, W., Breuil, M-C., Hansen, L. H., Setubal, J. C. & Philippot, L., 2020, In: Microbiome. 8, 1, 14 p., 52.

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  94 Citations (Scopus)

  22 Downloads (Pure)

• Isolation and characterisation of novel phages infecting Lactobacillus plantarum and proposal of a new genus, "Silenusvirus"

  Kyrkou, I., Carstens, A. B., Ellegaard-Jensen, L., Kot, W., Zervas, A., Djurhuus, A. M., Neve, H., Franz, C. M. A. P., Hansen, M. & Hansen, L. H., 2020, In: Scientific Reports. 10, 1, 10 p., 8763.

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  10 Citations (Scopus)

  25 Downloads (Pure)

• Pectobacterium Phage Jarilo Displays Broad Host Range and Represents a Novel Genus of Bacteriophages Within the Family Autographiviridae

  Pedersen, J. S., Carstens, A. B., Djurhuus, A. M., Kot, W., Neve, H. & Hansen, L. H., 2020, In: PHAGE: Therapy, Applications, and Research. 1, 4, p. 237-244 8 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

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  10 Citations (Scopus)

• Physical fitness in community-dwelling older adults is linked to dietary intake, gut microbiota, and metabolomic signatures

  Castro-Mejia, J. L., Khakimov, B., Krych, L., Bülow, J., Bechshøft, R. L., Højfeldt, G., Mertz, K. H., Garne, E. S., Schacht, S. R., Ahmad, H. F., Kot, W., Hansen, L. H., Perez-Cueto, F. J. A., Lind, M. V., Lassen, A. J., Tetens, I., Jensen, T., Reitelseder, S., Jespersen, A. P., Holm, L. & 2 others, Engelsen, S. B. & Nielsen, D. S., 2020, In: Aging Cell. 19, 3, 13 p., e13105.

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  43 Citations (Scopus)

  125 Downloads (Pure)

• Presentation of Three Novel Tailed Phages Targeting Multiple Strains of Pseudomonas syringae

  Jørgensen, J. B., Djurhuus, A. M., Carstens, A. B., Kot, W., Neve, H., Morris, C. E. & Hansen, L. H., 2020, In: PHAGE: Therapy, Applications, and Research. 1, 4, p. 245-250 6 p.

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• Pretreatment Prevotella-to-Bacteroides ratio and salivary amylase gene copy number as prognostic markers for dietary weight loss

  Hjorth, M. F., Christensen, L., Larsen, T. M., Roager, H. M., Krych, L., Kot, W., Nielsen, D. S., Ritz, C. & Astrup, A., 2020, In: American Journal of Clinical Nutrition. 111, 5, p. 1079-1086 8 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  File
  33 Citations (Scopus)