Xuan Ji Li

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• 2024

  Co-localization of antibiotic resistance genes is widespread in the infant gut microbiome and associates with an immature gut microbial composition

  Li, X., Brejnrod, A., Trivedi, U., Russel, J., Thorsen, J., Shah, S. A., Vestergaard, G. A., Rasmussen, M. A., Nesme, J., Bisgaard, H., Stokholm, J. & Sørensen, S. J., 2024, In: Microbiome. 12, 1, 18 p., 87.

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  1 Citation (Scopus)

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• Interspecific interactions facilitate keystone species in a multispecies biofilm that promotes plant growth

  Yang, N., Røder, H. L., Wicaksono, W. A., Wassermann, B., Russel, J., Li, X., Nesme, J., Berg, G., Sørensen, S. J. & Burmølle, M., 2024, In: The ISME Journal. 18, 1, 15 p.

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  4 Citations (Scopus)

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• 2023

  Differential responses of the gut microbiome and resistome to antibiotic exposures in infants and adults

  Li, X., Brejnrod, A., Thorsen, J., Zachariasen, T., Trivedi, U., Russel, J., Vestergaard, G. A., Stokholm, J., Rasmussen, M. A. & Sørensen, S. J., 2023, In: Nature Communications. 14, 1, 16 p., 8526.

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  12 Citations (Scopus)

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• Fungi and bacteria in the beds of rural and urban infants correlate with later risk of atopic diseases

  Lehtimäki, J., Gupta, S., Hjelmsø, M., Shah, S., Thorsen, J., Rasmussen, M. A., Soverini, M., Li, X., Russel, J., Trivedi, U., Brix, S., Bønnelykke, K., Chawes, B. L., Bisgaard, H., Sørensen, S. J. & Stokholm, J., 2023, In: Clinical and Experimental Allergy. 53, 12, p. 1268-1278 11 p.

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  4 Citations (Scopus)

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• The airway microbiota of neonates colonized with asthma-associated pathogenic bacteria

  Thorsen, J., Li, X. J., Peng, S., Sunde, R. B., Shah, S. A., Bhattacharyya, M., Poulsen, C. S., Poulsen, C. E., Leal Rodriguez, C., Widdowson, M., Neumann, A. U., Trivedi, U., Chawes, B., Bønnelykke, K., Bisgaard, H., Sørensen, S. J. & Stokholm, J., 2023, In: Nature Communications. 14, 12 p., 6668.

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  7 Citations (Scopus)

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• 2022

  Metagenomic evidence for co-occurrence of antibiotic, biocide and metal resistance genes in pigs

  Li, X., Rensing, C., Vestergaard, G., Arumugam, M., Nesme, J., Gupta, S., Brejnrod, A. D. & Sørensen, S. J., 2022, In: Environment International. 158, 10 p., 106899.

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  51 Citations (Scopus)

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• 2021

  A community resource for paired genomic and metabolomic data mining

  Schorn, M. A., Verhoeven, S., Ridder, L., Huber, F., Acharya, D. D., Aksenov, A. A., Aleti, G., Moghaddam, J. A., Aron, A. T., Aziz, S., Bauermeister, A., Bauman, K. D., Baunach, M., Beemelmanns, C., Beman, J. M., Berlanga-Clavero, M. V., Blacutt, A. A., Bode, H. B., Boullie, A., Brejnrod, A. & 90 others, Bugni, T. S., Calteau, A., Cao, L., Carrión, V. J., Castelo-Branco, R., Chanana, S., Chase, A. B., Chevrette, M. G., Costa-Lotufo, L. V., Crawford, J. M., Currie, C. R., Cuypers, B., Dang, T., de Rond, T., Demko, A. M., Dittmann, E., Du, C., Drozd, C., Dujardin, J-C., Dutton, R. J., Edlund, A., Fewer, D. P., Garg, N., Gauglitz, J. M., Gentry, E. C., Gerwick, L., Glukhov, E., Gross, H., Gugger, M., Matus, D. G. G., Helfrich, E. J. N., Hempel, B-F., Hur, J-S., Iorio, M., Jensen, P. R., Kang, K. B., Kaysser, L., Kelleher, N. L., Kim, C. S., Kim, K. H., Koester, I., König, G. M., Leao, T., Lee, S. R., Lee, Y-Y., Li, X., Little, J. C., Maloney, K. N., Männle, D., Martin H., C., McAvoy, A. C., Metcalf, W. W., Mohimani, H., Molina-Santiago, C., Moore, B. S., Mullowney, M. W., Muskat, M., Nothias, L-F., O'Neill, E. C., Parkinson, E. I., Petras, D., Piel, J., Pierce, E. C., Pires, K., Reher, R., Romero, D., Roper, M. C., Rust, M., Saad, H., Saenz, C., Sanchez, L. M., Sørensen, S. J., Sosio, M., Süssmuth, R. D., Sweeney, D., Tahlan, K., Thomson, R. J., Tobias, N. J., Trindade-Silva, A. E., van Wezel, G. P., Wang, M., Weldon, K. C., Zhang, F., Ziemert, N., Duncan, K. R., Crüsemann, M., Rogers, S., Dorrestein, P. C., Medema, M. H. & van der Hooft, J. J. J., 2021, In: Nature Chemical Biology. 17, 4, p. 363-368

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  94 Citations (Scopus)

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• Antimicrobial Activity of Metals and Metalloids

  Li, Y. P., Fekih, I. B., Fru, E. C., Moraleda-Munoz, A., Li, X. J., Rosen, B. P., Yoshinaga, M. & Rensing, C., 2021, In: Annual Review of Microbiology. 75, 23 p., 9.

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  35 Citations (Scopus)

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• Co-selection of antibiotic resistance genes, and mobile genetic elements in the presence of heavy metals in poultry farm environments

  Mazhar, S. H., Li, X., Rashid, A., Su, J., Xu, J., Brejnrod, A. D., Su, J-Q., Wu, Y., Zhu, Y-G., Zhou, S. G., Feng, R. & Rensing, C., 2021, In: Science of the Total Environment. 755, Part 2, 10 p., 142702.

  Research output: Contribution to journal › Journal article › Research › peer-review
  172 Citations (Scopus)

• Efficient Production of Pyruvate Using Metabolically Engineered Lactococcus lactis

  Suo, F., Liu, J., Chen, J., Li, X., Solem, C. & Jensen, P. R., 2021, In: Frontiers in Bioengineering and Biotechnology. 8, 12 p., 611701.

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  9 Citations (Scopus)

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• Emergent bacterial community properties induce enhanced drought tolerance in Arabidopsis

  Yang, N., Nesme, J., Røder, H. L., Li, X., Zuo, Z., Petersen, M., Burmølle, M. & Sørensen, S. J., 2021, In: npj Biofilms and Microbiomes. 7, 11 p., 82.

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  57 Citations (Scopus)

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• The infant gut resistome associates with E. coli, environmental exposures, gut microbiome maturity, and asthma-associated bacterial composition

  Li, X., Stokholm, J., Brejnrod, A., Vestergaard, G. A., Russel, J., Trivedi, U., Thorsen, J., Gupta, S., Hjelmsø, M. H., Shah, S. A., Rasmussen, M. A., Bisgaard, H. & Sørensen, S. J., 2021, In: Cell Host & Microbe. 29, 6, p. 975–987.e4 17 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
• 2020

  Environmental shaping of the bacterial and fungal community in infant bed dust and correlations with the airway microbiota

  Gupta, S., Hjelmsø, M. H., Lehtimäki, J., Li, X., Mortensen, M. S., Russel, J., Trivedi, U., Rasmussen, M. A., Stokholm, J., Bisgaard, H. & Sørensen, S. J., 2020, In: Microbiome. 8, 16 p., 115.

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  36 Citations (Scopus)

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• The microbiome of captive hamadryas baboons

  Li, X. J., Trivedi, U., Brejnrod, A. D., Vestergaard, G. A., Mortensen, M. S., Bertelsen, M. F. & Sørensen, S. J., 2020, In: BMC Animal Microbiome. 2, 10 p., 25.

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  8 Citations (Scopus)

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• 2019

  Heavy metal exposure causes changes in the metabolic health-associated gut microbiome and metabolites

  Li, X. J., Brejnrod, A. D., Ernst, M., Rykær, M., Herschend, J., Olsen, N. M. C., Dorrestein, P. C., Rensing, C. & Sørensen, S. J., 2019, In: Environment International. 126, p. 454-467 14 p.

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  160 Citations (Scopus)

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• High throughput sequencing applied to analyze microbial communities in different animal models with an interpretation in a human health perspectives

  Li, X. J., 2019, Department of Biology, Faculty of Science, University of Copenhagen.

  Research output: Book/Report › Ph.D. thesis › Research

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• 2018

  Papio spp. Colon microbiome and its link to obesity in pregnancy

  Li, X., Rensing, C., Taylor, W. L., Costelle, C., Brejnrod, A. D., Ferry, R. J. . J., Higgins, P. B., Folli, F., Kottapalli, K. R., Hubbard, G. B., Dick, E. J. . J., Yooseph, S., Nelson, K. E. & Schlabritz-Loutsevitch, N., Dec 2018, In: Journal of Medical Primatology. 47, 6, p. 393-401

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  3 Citations (Scopus)
• 2017

  Bacterial resistance to arsenic protects against protist killing

  Hao, X., Li, X., Pal, C., Hobman, J., Larsson, D. G. J., Saquib, Q., Alwathnani, H. A., Rosen, B. P., Zhu, Y-G. & Rensing, C., Apr 2017, In: BioMetals. 30, 2, p. 307-311 5 p.

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  14 Citations (Scopus)
• 2016

  A role for copper in protozoan grazing - two billion years selecting for bacterial copper resistance

  Hao, X., Lüthje, F. L., Rønn, R., German, N. A., Li, X., Huang, F., Kisaka, J., Huffman, D., Alwathnani, H. A., Zhu, Y-G. & Rensing, C., 2016, In: Molecular Microbiology. 102, 4, p. 628-641 14 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  59 Citations (Scopus)
• 2015

  Draft Genome Sequence of Se(IV)-Reducing Bacterium Pseudomonas migulae ES3-33

  Li, X., Kot, W., Wang, D., Zheng, S., Wang, G., Hansen, L. H. & Rensing, C., 2015, In: Genome Announcements. 3, 3, p. 1-2 2 p., e00406-15.

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  8 Citations (Scopus)

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• Spring freeze effect on wheat yield is modulated by winter temperature fluctuations: evidence from meta-analysis and simulating experiment

  Li, X. J., Cai, J., Liu, F., Dai, T., Cao, W. & Jiang, D., 2015, In: Journal of Agronomy and Crop Science. 201, 4, p. 288-300 13 p.

  Research output: Contribution to journal › Journal article › Research › peer-review
  37 Citations (Scopus)