Abstract
As publishers establish a greater online presence as well as infrastructure to support the distribution of more varied information, the idea of an executable paper that enables greater interaction has developed. An executable paper provides more information for computational experiments and results than the text, tables, and figures of standard papers. Executable papers can bundle computational content that allow readers and reviewers to interact, validate, and explore experiments. By including such content, authors facilitate future discoveries by lowering the barrier to reproducing and extending results. We present an infrastructure for creating, disseminating, and maintaining executable papers. Our approach is rooted in provenance, the documentation of exactly how data, experiments, and results were generated. We seek to improve the experience for everyone involved in the life cycle of an executable paper. The automated capture of provenance information allows authors to easily integrate and update results into papers as they write, and also helps reviewers better evaluate approaches by enabling them to explore experimental results by varying parameters or data. With a provenance-based system, readers are able to examine exactly how a result was developed to better understand and extend published findings.
Original language | English |
---|---|
Journal | Procedia Computer Science |
Volume | 4 |
Pages (from-to) | 648-657 |
Number of pages | 10 |
ISSN | 1877-0509 |
DOIs | |
Publication status | Published - 2011 |
Externally published | Yes |
Event | 11th International Conference on Computational Science, ICCS 2011 - Singapore, Singapore Duration: 1 Jun 2011 → 3 Jun 2011 |
Conference
Conference | 11th International Conference on Computational Science, ICCS 2011 |
---|---|
Country/Territory | Singapore |
City | Singapore |
Period | 01/06/2011 → 03/06/2011 |
Sponsor | Elsevier B.V., University Tsukuba, Center for Computational Sciences |
Bibliographical note
Funding Information:Acknowledgments. We would like to thank all the developers that have contributed to the VisTrails system: Erik Anderson, Louis Bavoil, Clifton Brooks, Jason Callahan, Steve Callahan, Lorena Carlo, Lauro Lins, Tommy Ellkvist, Daniel Rees, Carlos Scheidegger, and Nathan Smith. The research and development of the VisTrails system has been funded by the National Science Foundation under grants IIS-1050422, IIS-0905385, IIS-0844572, ATM-0835821, IIS-0844546, IIS-0746500, CNS-0751152, IIS-0713637, OCE-0424602, IIS-0534628, CNS-0514485, IIS-0513692, CNS-0524096, CCF-0401498, OISE-0405402, CCF-0528201, CNS-0551724, the Department of Energy (SciDAC VACET and SDM centers, and SBIR 85821S08-II), National Institutes of Health (NCRR ARRA), and IBM Faculty Awards (2005, 2006, 2007, and 2008). E. Santos was partially supported by a CAPES/Fullbright fellowship. We also acknowledge support through a grant from the Army Research Office with funding from the DARPA OLE program.
Keywords
- Executable paper
- Provenance
- Reproducibility
- Scientific workflows