ACLY and ACSS2 link nutrient-dependent chromatin accessibility to CD8 T cell effector responses

Irem Kaymak, McLane J Watson, Brandon M Oswald, Shixin Ma, Benjamin K Johnson, Lisa M DeCamp, Batsirai M Mabvakure, Katarzyna M. Luda, Eric H Ma, Kin Lau, Zhen Fu, Brejnev Muhire, Susan M Kitchen-Goosen, Alexandra Vander Ark, Michael S Dahabieh, Bozena Samborska, Matthew Vos, Hui Shen, Zi Peng Fan, Thomas P RoddyGillian A Kingsbury, Cristovão M Sousa, Connie M Krawczyk, Kelsey S Williams, Ryan D Sheldon, Susan M Kaech, Dominic G Roy, Russell G Jones

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Abstract

Coordination of cellular metabolism is essential for optimal T cell responses. Here, we identify cytosolic acetyl-CoA production as an essential metabolic node for CD8 T cell function in vivo. We show that CD8 T cell responses to infection depend on acetyl-CoA derived from citrate via the enzyme ATP citrate lyase (ACLY). However, ablation of ACLY triggers an alternative, acetate-dependent pathway for acetyl-CoA production mediated by acyl-CoA synthetase short-chain family member 2 (ACSS2). Mechanistically, acetate fuels both the TCA cycle and cytosolic acetyl-CoA production, impacting T cell effector responses, acetate-dependent histone acetylation, and chromatin accessibility at effector gene loci. When ACLY is functional, ACSS2 is not required, suggesting acetate is not an obligate metabolic substrate for CD8 T cell function. However, loss of ACLY renders CD8 T cells dependent on acetate (via ACSS2) to maintain acetyl-CoA production and effector function. Together, ACLY and ACSS2 coordinate cytosolic acetyl-CoA production in CD8 T cells to maintain chromatin accessibility and T cell effector function.

Original languageEnglish
Article numbere20231820
JournalJournal of Experimental Medicine
Volume221
Issue number9
Number of pages24
ISSN0022-1007
DOIs
Publication statusPublished - 2024

Bibliographical note

© 2024 Kaymak et al.

Keywords

  • CD8-Positive T-Lymphocytes/immunology
  • Animals
  • Chromatin/metabolism
  • Acetyl Coenzyme A/metabolism
  • ATP Citrate (pro-S)-Lyase/metabolism
  • Mice
  • Acetates/metabolism
  • Mice, Inbred C57BL
  • Acetate-CoA Ligase/metabolism
  • Acetylation
  • Mice, Knockout
  • Cytosol/metabolism
  • Histones/metabolism

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