MobiSeq: De novo SNP discovery in model and non-model species through sequencing the flanking region of transposable elements

Alba Rey-Iglesia; Shyam Gopalakrishan; Christian Carøe; David E. Alquezar-Planas; Anne Ahlmann Nielsen; Timo Röder; Lene Bruhn Pedersen; Christina Næsborg-Nielsen; Mikkel-Holger S. Sinding; Martin Fredensborg Rath; Zhipeng Li; Bent Petersen; M Thomas P Gilbert; Michael Bunce; Tobias Mourier; Anders Johannes Hansen

doi:10.1111/1755-0998.12984

MobiSeq: De novo SNP discovery in model and non-model species through sequencing the flanking region of transposable elements

Alba Rey-Iglesia, Shyam Gopalakrishan, Christian Carøe, David E. Alquezar-Planas, Anne Ahlmann Nielsen, Timo Röder, Lene Bruhn Pedersen, Christina Næsborg-Nielsen, Mikkel-Holger S. Sinding, Martin Fredensborg Rath, Zhipeng Li, Bent Petersen, M Thomas P Gilbert, Michael Bunce, Tobias Mourier, Anders Johannes Hansen

Research output: Contribution to journal › Journal article › Research › peer-review

5 Citations (Scopus)

43 Downloads (Pure)

Original language	English
Journal	Molecular Ecology Resources
Volume	19
Issue number	2
Pages (from-to)	512-525
Number of pages	14
ISSN	1755-098X
DOIs	https://doi.org/10.1111/1755-0998.12984
Publication status	Published - 2019

Keywords

genotyping
population genomics
reduced representation library
SNP discovery
TE
transposable elements

Access to Document

10.1111/1755-0998.12984

Rey_Iglesia_et_al_2019_Molecular_Ecology_Resources_MobiSeq_De novo SNP discovery in model and non-model species through sequencing the flanking region of transposable elements_(accepted_version)Accepted author manuscript, 1.82 MB

Cite this

Rey-Iglesia, A., Gopalakrishan, S., Carøe, C., Alquezar-Planas, D. E., Nielsen, A. A., Röder, T., Pedersen, L. B., Næsborg-Nielsen, C., Sinding, M-H. S., Rath, M. F., Li, Z., Petersen, B., Gilbert, M. T. P., Bunce, M., Mourier, T., & Hansen, A. J. (2019). MobiSeq: De novo SNP discovery in model and non-model species through sequencing the flanking region of transposable elements. Molecular Ecology Resources, 19(2), 512-525. https://doi.org/10.1111/1755-0998.12984

MobiSeq: De novo SNP discovery in model and non-model species through sequencing the flanking region of transposable elements. / Rey-Iglesia, Alba; Gopalakrishan, Shyam; Carøe, Christian; Alquezar-Planas, David E.; Nielsen, Anne Ahlmann; Röder, Timo; Pedersen, Lene Bruhn; Næsborg-Nielsen, Christina; Sinding, Mikkel-Holger S.; Rath, Martin Fredensborg; Li, Zhipeng; Petersen, Bent ; Gilbert, M Thomas P; Bunce, Michael; Mourier, Tobias; Hansen, Anders Johannes.

In: Molecular Ecology Resources, Vol. 19, No. 2, 2019, p. 512-525.

Research output: Contribution to journal › Journal article › Research › peer-review

Rey-Iglesia, A, Gopalakrishan, S, Carøe, C, Alquezar-Planas, DE, Nielsen, AA, Röder, T, Pedersen, LB, Næsborg-Nielsen, C, Sinding, M-HS , Rath, MF, Li, Z, Petersen, B , Gilbert, MTP, Bunce, M, Mourier, T & Hansen, AJ 2019, 'MobiSeq: De novo SNP discovery in model and non-model species through sequencing the flanking region of transposable elements', Molecular Ecology Resources, vol. 19, no. 2, pp. 512-525. https://doi.org/10.1111/1755-0998.12984

Rey-Iglesia, Alba ; Gopalakrishan, Shyam ; Carøe, Christian ; Alquezar-Planas, David E. ; Nielsen, Anne Ahlmann ; Röder, Timo ; Pedersen, Lene Bruhn ; Næsborg-Nielsen, Christina ; Sinding, Mikkel-Holger S. ; Rath, Martin Fredensborg ; Li, Zhipeng ; Petersen, Bent ; Gilbert, M Thomas P ; Bunce, Michael ; Mourier, Tobias ; Hansen, Anders Johannes. / MobiSeq: De novo SNP discovery in model and non-model species through sequencing the flanking region of transposable elements. In: Molecular Ecology Resources. 2019 ; Vol. 19, No. 2. pp. 512-525.

@article{1e01080c1f1642aeb2bc500dec0dd781,

title = "MobiSeq: De novo SNP discovery in model and non-model species through sequencing the flanking region of transposable elements",

keywords = "genotyping, population genomics, reduced representation library, SNP discovery, TE, transposable elements",

author = "Alba Rey-Iglesia and Shyam Gopalakrishan and Christian Car{\o}e and Alquezar-Planas, {David E.} and Nielsen, {Anne Ahlmann} and Timo R{\"o}der and Pedersen, {Lene Bruhn} and Christina N{\ae}sborg-Nielsen and Sinding, {Mikkel-Holger S.} and Rath, {Martin Fredensborg} and Zhipeng Li and Bent Petersen and Gilbert, {M Thomas P} and Michael Bunce and Tobias Mourier and Hansen, {Anders Johannes}",

year = "2019",

doi = "10.1111/1755-0998.12984",

language = "English",

volume = "19",

pages = "512--525",

journal = "Molecular Ecology",

issn = "0962-1083",

publisher = "Wiley-Blackwell",

number = "2",

}

TY - JOUR

T1 - MobiSeq: De novo SNP discovery in model and non-model species through sequencing the flanking region of transposable elements

AU - Rey-Iglesia, Alba

AU - Gopalakrishan, Shyam

AU - Carøe, Christian

AU - Alquezar-Planas, David E.

AU - Nielsen, Anne Ahlmann

AU - Röder, Timo

AU - Pedersen, Lene Bruhn

AU - Næsborg-Nielsen, Christina

AU - Sinding, Mikkel-Holger S.

AU - Rath, Martin Fredensborg

AU - Li, Zhipeng

AU - Petersen, Bent

AU - Gilbert, M Thomas P

AU - Bunce, Michael

AU - Mourier, Tobias

AU - Hansen, Anders Johannes

PY - 2019

Y1 - 2019

KW - genotyping

KW - population genomics

KW - reduced representation library

KW - SNP discovery

KW - TE

KW - transposable elements

U2 - 10.1111/1755-0998.12984

DO - 10.1111/1755-0998.12984

M3 - Journal article

C2 - 30575257

VL - 19

SP - 512

EP - 525

JO - Molecular Ecology

JF - Molecular Ecology

SN - 0962-1083

IS - 2

ER -