PET-BIDS, an extension to the brain imaging data structure for positron emission tomography

Martin Norgaard; Granville J Matheson; Hanne D. Hansen; Adam Thomas; Graham Searle; Gaia Rizzo; Mattia Veronese; Alessio Giacomel; Maqsood Yaqub; Matteo Tonietto; Thomas Funck; Ashley Gillman; Hugo Boniface; Alexandre Routier; Jelle R Dalenberg; Tobey Betthauser; Franklin Feingold; Christopher J Markiewicz; Krzysztof J Gorgolewski; Ross W Blair; Stefan Appelhoff; Remi Gau; Taylor Salo; Guiomar Niso; Cyril Pernet; Christophe Phillips; Robert Oostenveld; Jean-Dominique Gallezot; Richard E Carson; Gitte M Knudsen; Robert B Innis; Melanie Ganz

doi:10.1038/s41597-022-01164-1

PET-BIDS, an extension to the brain imaging data structure for positron emission tomography

Martin Norgaard, Granville J Matheson, Hanne D. Hansen, Adam Thomas, Graham Searle, Gaia Rizzo, Mattia Veronese, Alessio Giacomel, Maqsood Yaqub, Matteo Tonietto, Thomas Funck, Ashley Gillman, Hugo Boniface, Alexandre Routier, Jelle R Dalenberg, Tobey Betthauser, Franklin Feingold, Christopher J Markiewicz, Krzysztof J Gorgolewski, Ross W BlairStefan Appelhoff, Remi Gau, Taylor Salo, Guiomar Niso, Cyril Pernet, Christophe Phillips, Robert Oostenveld, Jean-Dominique Gallezot, Richard E Carson, Gitte M Knudsen, Robert B Innis, Melanie Ganz

Research output: Contribution to journal › Journal article › Research › peer-review

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Abstract

The Brain Imaging Data Structure (BIDS) is a standard for organizing and describing neuroimaging datasets, serving not only to facilitate the process of data sharing and aggregation, but also to simplify the application and development of new methods and software for working with neuroimaging data. Here, we present an extension of BIDS to include positron emission tomography (PET) data, also known as PET-BIDS, and share several open-access datasets curated following PET-BIDS along with tools for conversion, validation and analysis of PET-BIDS datasets.

Original language	English
Article number	65
Journal	Scientific Data
Volume	9
Issue number	1
Pages (from-to)	1-7
ISSN	2052-4463
DOIs	https://doi.org/10.1038/s41597-022-01164-1
Publication status	Published - 2022

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Norgaard, M., Matheson, G. J., Hansen, H. D., Thomas, A., Searle, G., Rizzo, G., Veronese, M., Giacomel, A., Yaqub, M., Tonietto, M., Funck, T., Gillman, A., Boniface, H., Routier, A., Dalenberg, J. R., Betthauser, T., Feingold, F., Markiewicz, C. J., Gorgolewski, K. J., ... Ganz, M. (2022). PET-BIDS, an extension to the brain imaging data structure for positron emission tomography. Scientific Data, 9(1), 1-7. [65]. https://doi.org/10.1038/s41597-022-01164-1

PET-BIDS, an extension to the brain imaging data structure for positron emission tomography. / Norgaard, Martin; Matheson, Granville J; Hansen, Hanne D.; Thomas, Adam; Searle, Graham; Rizzo, Gaia; Veronese, Mattia; Giacomel, Alessio; Yaqub, Maqsood; Tonietto, Matteo; Funck, Thomas; Gillman, Ashley; Boniface, Hugo; Routier, Alexandre; Dalenberg, Jelle R; Betthauser, Tobey; Feingold, Franklin; Markiewicz, Christopher J; Gorgolewski, Krzysztof J; Blair, Ross W; Appelhoff, Stefan; Gau, Remi; Salo, Taylor; Niso, Guiomar; Pernet, Cyril; Phillips, Christophe; Oostenveld, Robert; Gallezot, Jean-Dominique; Carson, Richard E; Knudsen, Gitte M; Innis, Robert B; Ganz, Melanie.

In: Scientific Data, Vol. 9, No. 1, 65, 2022, p. 1-7.

Research output: Contribution to journal › Journal article › Research › peer-review

Norgaard, M, Matheson, GJ, Hansen, HD, Thomas, A, Searle, G, Rizzo, G, Veronese, M, Giacomel, A, Yaqub, M, Tonietto, M, Funck, T, Gillman, A, Boniface, H, Routier, A, Dalenberg, JR, Betthauser, T, Feingold, F, Markiewicz, CJ, Gorgolewski, KJ, Blair, RW, Appelhoff, S, Gau, R, Salo, T, Niso, G, Pernet, C, Phillips, C, Oostenveld, R, Gallezot, J-D, Carson, RE, Knudsen, GM, Innis, RB & Ganz, M 2022, 'PET-BIDS, an extension to the brain imaging data structure for positron emission tomography', Scientific Data, vol. 9, no. 1, 65, pp. 1-7. https://doi.org/10.1038/s41597-022-01164-1

Norgaard, Martin ; Matheson, Granville J ; Hansen, Hanne D. ; Thomas, Adam ; Searle, Graham ; Rizzo, Gaia ; Veronese, Mattia ; Giacomel, Alessio ; Yaqub, Maqsood ; Tonietto, Matteo ; Funck, Thomas ; Gillman, Ashley ; Boniface, Hugo ; Routier, Alexandre ; Dalenberg, Jelle R ; Betthauser, Tobey ; Feingold, Franklin ; Markiewicz, Christopher J ; Gorgolewski, Krzysztof J ; Blair, Ross W ; Appelhoff, Stefan ; Gau, Remi ; Salo, Taylor ; Niso, Guiomar ; Pernet, Cyril ; Phillips, Christophe ; Oostenveld, Robert ; Gallezot, Jean-Dominique ; Carson, Richard E ; Knudsen, Gitte M ; Innis, Robert B ; Ganz, Melanie. / PET-BIDS, an extension to the brain imaging data structure for positron emission tomography. In: Scientific Data. 2022 ; Vol. 9, No. 1. pp. 1-7.

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AU - Searle, Graham

AU - Rizzo, Gaia

AU - Veronese, Mattia

AU - Giacomel, Alessio

AU - Yaqub, Maqsood

AU - Tonietto, Matteo

AU - Funck, Thomas

AU - Gillman, Ashley

AU - Boniface, Hugo

AU - Routier, Alexandre

AU - Dalenberg, Jelle R

AU - Betthauser, Tobey

AU - Feingold, Franklin

AU - Markiewicz, Christopher J

AU - Gorgolewski, Krzysztof J

AU - Blair, Ross W

AU - Appelhoff, Stefan

AU - Gau, Remi

AU - Salo, Taylor

AU - Niso, Guiomar

AU - Pernet, Cyril

AU - Phillips, Christophe

AU - Oostenveld, Robert

AU - Gallezot, Jean-Dominique

AU - Carson, Richard E

AU - Knudsen, Gitte M

AU - Innis, Robert B

AU - Ganz, Melanie

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AB - The Brain Imaging Data Structure (BIDS) is a standard for organizing and describing neuroimaging datasets, serving not only to facilitate the process of data sharing and aggregation, but also to simplify the application and development of new methods and software for working with neuroimaging data. Here, we present an extension of BIDS to include positron emission tomography (PET) data, also known as PET-BIDS, and share several open-access datasets curated following PET-BIDS along with tools for conversion, validation and analysis of PET-BIDS datasets.

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