The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search

Jakob Hull Havgaard; Rune B. Lyngsø; Jan Gorodkin

doi:10.1093/nar/gki473

The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search

Jakob Hull Havgaard
, Rune B. Lyngsø
, Jan Gorodkin

Research output: Contribution to journal › Journal article › Research › peer-review

Abstract

FOLDALIGN is a Sankoff-based algorithm for making structural alignments of RNA sequences. Here, we present a web server for making pairwise alignments between two RNA sequences, using the recently updated version of FOLDALIGN. The server can be used to scan two sequences for a common structural RNA motif of limited size, or the entire sequences can be aligned locally or globally. The web server offers a graphical interface, which makes it simple to make alignments and manually browse the results. the web server can be accessed at http://foldalign.kvl.dk

Original language	English
Journal	Nucleic Acids Research
Volume	33
Pages (from-to)	W650-W653
Number of pages	4
ISSN	0305-1048
DOIs	https://doi.org/10.1093/nar/gki473
Publication status	Published - 2005

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title = "The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search",

abstract = "FOLDALIGN is a Sankoff-based algorithm for making structural alignments of RNA sequences. Here, we present a web server for making pairwise alignments between two RNA sequences, using the recently updated version of FOLDALIGN. The server can be used to scan two sequences for a common structural RNA motif of limited size, or the entire sequences can be aligned locally or globally. The web server offers a graphical interface, which makes it simple to make alignments and manually browse the results. the web server can be accessed at http://foldalign.kvl.dk",

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T1 - The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search

AU - Havgaard, Jakob Hull

AU - Lyngsø, Rune B.

AU - Gorodkin, Jan

PY - 2005

Y1 - 2005

N2 - FOLDALIGN is a Sankoff-based algorithm for making structural alignments of RNA sequences. Here, we present a web server for making pairwise alignments between two RNA sequences, using the recently updated version of FOLDALIGN. The server can be used to scan two sequences for a common structural RNA motif of limited size, or the entire sequences can be aligned locally or globally. The web server offers a graphical interface, which makes it simple to make alignments and manually browse the results. the web server can be accessed at http://foldalign.kvl.dk

AB - FOLDALIGN is a Sankoff-based algorithm for making structural alignments of RNA sequences. Here, we present a web server for making pairwise alignments between two RNA sequences, using the recently updated version of FOLDALIGN. The server can be used to scan two sequences for a common structural RNA motif of limited size, or the entire sequences can be aligned locally or globally. The web server offers a graphical interface, which makes it simple to make alignments and manually browse the results. the web server can be accessed at http://foldalign.kvl.dk

U2 - 10.1093/nar/gki473

DO - 10.1093/nar/gki473

M3 - Journal article

C2 - 15980555

SN - 0305-1048

VL - 33

SP - W650-W653

JO - Nucleic Acids Research

JF - Nucleic Acids Research

ER -