The Global Soil Mycobiome consortium dataset for boosting fungal diversity research

Leho Tedersoo; Vladimir Mikryukov; Sten Anslan; Mohammad Bahram; Abdul Nasir Khalid; Adriana Corrales; Ahto Agan; Aída M. Vasco-Palacios; Alessandro Saitta; Alexandre Antonelli; Andrea C. Rinaldi; Annemieke Verbeken; Bobby P. Sulistyo; Boris Tamgnoue; Brendan Furneaux; Camila Duarte Ritter; Casper Nyamukondiwa; Cathy Sharp; César Marín; D. Q. Dai; Daniyal Gohar; Dipon Sharmah; Elisabeth Machteld Biersma; Erin K. Cameron; Eske De Crop; Eveli Otsing; Evgeny A. Davydov; Felipe E. Albornoz; Francis Q. Brearley; Franz Buegger; Genevieve Gates; Geoffrey Zahn; Gregory Bonito; Indrek Hiiesalu; Inga Hiiesalu; Irma Zettur; Isabel C. Barrio; Jaan Pärn; Jacob Heilmann-Clausen; Jelena Ankuda; John Y. Kupagme; Joosep Sarapuu; Jose G. Maciá-Vicente; Joseph Djeugap Fovo; József Geml; Juha M. Alatalo; Julieta Alvarez-Manjarrez; Jutamart Monkai; Kadri Põldmaa; Kadri Runnel; Kalev Adamson; Kari A. Bråthen; Karin Pritsch; Kassim I. Tchan; Kęstutis Armolaitis; Kevin D. Hyde; Kevin K. Newsham; Kristel Panksep; Lateef A. Adebola; Louis J. Lamit; Malka Saba; Marcela E. da Silva Cáceres; Maria Tuomi; Marieka Gryzenhout; Marijn Bauters; Miklós Bálint; Nalin Wijayawardene; Niloufar Hagh-Doust; Nourou S. Yorou; Olavi Kurina; Peter E. Mortimer; Peter Meidl; R. Henrik Nilsson; Rasmus Puusepp; Rebeca Casique-Valdés; Rein Drenkhan; Roberto Garibay-Orijel; Roberto Godoy; Saleh Alfarraj; Saleh Rahimlou; Sergei Põlme; Sergey V. Dudov; Sunil Mundra; Talaat Ahmed; Tarquin Netherway; Terry W. Henkel; Tomas Roslin; Vladimir E. Fedosov; Vladimir G. Onipchenko; W. A. Erandi Yasanthika; Young Woon Lim; Meike Piepenbring; Darta Klavina; Urmas Kõljalg; Kessy Abarenkov

doi:10.1007/s13225-021-00493-7

The Global Soil Mycobiome consortium dataset for boosting fungal diversity research

Leho Tedersoo^*, Vladimir Mikryukov, Sten Anslan, Mohammad Bahram, Abdul Nasir Khalid, Adriana Corrales, Ahto Agan, Aída M. Vasco-Palacios, Alessandro Saitta, Alexandre Antonelli, Andrea C. Rinaldi, Annemieke Verbeken, Bobby P. Sulistyo, Boris Tamgnoue, Brendan Furneaux, Camila Duarte Ritter, Casper Nyamukondiwa, Cathy Sharp, César Marín, D. Q. DaiDaniyal Gohar, Dipon Sharmah, Elisabeth Machteld Biersma, Erin K. Cameron, Eske De Crop, Eveli Otsing, Evgeny A. Davydov, Felipe E. Albornoz, Francis Q. Brearley, Franz Buegger, Genevieve Gates, Geoffrey Zahn, Gregory Bonito, Indrek Hiiesalu, Inga Hiiesalu, Irma Zettur, Isabel C. Barrio, Jaan Pärn, Jacob Heilmann-Clausen, Jelena Ankuda, John Y. Kupagme, Joosep Sarapuu, Jose G. Maciá-Vicente, Joseph Djeugap Fovo, József Geml, Juha M. Alatalo, Julieta Alvarez-Manjarrez, Jutamart Monkai, Kadri Põldmaa, Kadri Runnel, Kalev Adamson, Kari A. Bråthen, Karin Pritsch, Kassim I. Tchan, Kęstutis Armolaitis, Kevin D. Hyde, Kevin K. Newsham, Kristel Panksep, Lateef A. Adebola, Louis J. Lamit, Malka Saba, Marcela E. da Silva Cáceres, Maria Tuomi, Marieka Gryzenhout, Marijn Bauters, Miklós Bálint, Nalin Wijayawardene, Niloufar Hagh-Doust, Nourou S. Yorou, Olavi Kurina, Peter E. Mortimer, Peter Meidl, R. Henrik Nilsson, Rasmus Puusepp, Rebeca Casique-Valdés, Rein Drenkhan, Roberto Garibay-Orijel, Roberto Godoy, Saleh Alfarraj, Saleh Rahimlou, Sergei Põlme, Sergey V. Dudov, Sunil Mundra, Talaat Ahmed, Tarquin Netherway, Terry W. Henkel, Tomas Roslin, Vladimir E. Fedosov, Vladimir G. Onipchenko, W. A. Erandi Yasanthika, Young Woon Lim, Meike Piepenbring, Darta Klavina, Urmas Kõljalg, Kessy Abarenkov

^*Corresponding author for this work

Research output: Contribution to journal › Journal article › Research › peer-review

71 Citations (Scopus)

Abstract

Fungi are highly important biotic components of terrestrial ecosystems, but we still have a very limited understanding about their diversity and distribution. This data article releases a global soil fungal dataset of the Global Soil Mycobiome consortium (GSMc) to boost further research in fungal diversity, biogeography and macroecology. The dataset comprises 722,682 fungal operational taxonomic units (OTUs) derived from PacBio sequencing of full-length ITS and 18S-V9 variable regions from 3200 plots in 108 countries on all continents. The plots are supplied with geographical and edaphic metadata. The OTUs are taxonomically and functionally assigned to guilds and other functional groups. The entire dataset has been corrected by excluding chimeras, index-switch artefacts and potential contamination. The dataset is more inclusive in terms of geographical breadth and phylogenetic diversity of fungi than previously published data. The GSMc dataset is available over the PlutoF repository.

Original language	English
Journal	Fungal Diversity
Volume	111
Issue number	1
Pages (from-to)	573-588
ISSN	1560-2745
DOIs	https://doi.org/10.1007/s13225-021-00493-7
Publication status	Published - 2021

Bibliographical note

Publisher Copyright:
© 2021, MUSHROOM RESEARCH FOUNDATION.

Keywords

Fungal richness
Global dataset
PacBio sequencing
Soil fungi

Access to Document

10.1007/s13225-021-00493-7

Cite this

Tedersoo, L., Mikryukov, V., Anslan, S., Bahram, M., Khalid, A. N., Corrales, A., Agan, A., Vasco-Palacios, A. M., Saitta, A., Antonelli, A., Rinaldi, A. C., Verbeken, A., Sulistyo, B. P., Tamgnoue, B., Furneaux, B., Ritter, C. D., Nyamukondiwa, C., Sharp, C., Marín, C., ... Abarenkov, K. (2021). The Global Soil Mycobiome consortium dataset for boosting fungal diversity research. Fungal Diversity, 111(1), 573-588. https://doi.org/10.1007/s13225-021-00493-7

The Global Soil Mycobiome consortium dataset for boosting fungal diversity research. / Tedersoo, Leho; Mikryukov, Vladimir; Anslan, Sten; Bahram, Mohammad; Khalid, Abdul Nasir; Corrales, Adriana; Agan, Ahto; Vasco-Palacios, Aída M.; Saitta, Alessandro; Antonelli, Alexandre; Rinaldi, Andrea C.; Verbeken, Annemieke; Sulistyo, Bobby P.; Tamgnoue, Boris; Furneaux, Brendan; Ritter, Camila Duarte; Nyamukondiwa, Casper; Sharp, Cathy; Marín, César; Dai, D. Q.; Gohar, Daniyal; Sharmah, Dipon; Biersma, Elisabeth Machteld; Cameron, Erin K.; De Crop, Eske; Otsing, Eveli; Davydov, Evgeny A.; Albornoz, Felipe E.; Brearley, Francis Q.; Buegger, Franz; Gates, Genevieve; Zahn, Geoffrey; Bonito, Gregory; Hiiesalu, Indrek; Hiiesalu, Inga; Zettur, Irma; Barrio, Isabel C.; Pärn, Jaan; Heilmann-Clausen, Jacob; Ankuda, Jelena; Kupagme, John Y.; Sarapuu, Joosep; Maciá-Vicente, Jose G.; Fovo, Joseph Djeugap; Geml, József; Alatalo, Juha M.; Alvarez-Manjarrez, Julieta; Monkai, Jutamart; Põldmaa, Kadri; Runnel, Kadri; Adamson, Kalev; Bråthen, Kari A.; Pritsch, Karin; Tchan, Kassim I.; Armolaitis, Kęstutis; Hyde, Kevin D.; Newsham, Kevin K.; Panksep, Kristel; Adebola, Lateef A.; Lamit, Louis J.; Saba, Malka; da Silva Cáceres, Marcela E.; Tuomi, Maria; Gryzenhout, Marieka; Bauters, Marijn; Bálint, Miklós; Wijayawardene, Nalin; Hagh-Doust, Niloufar; Yorou, Nourou S.; Kurina, Olavi; Mortimer, Peter E.; Meidl, Peter; Nilsson, R. Henrik; Puusepp, Rasmus; Casique-Valdés, Rebeca; Drenkhan, Rein; Garibay-Orijel, Roberto; Godoy, Roberto; Alfarraj, Saleh; Rahimlou, Saleh; Põlme, Sergei; Dudov, Sergey V.; Mundra, Sunil; Ahmed, Talaat; Netherway, Tarquin; Henkel, Terry W.; Roslin, Tomas; Fedosov, Vladimir E.; Onipchenko, Vladimir G.; Yasanthika, W. A. Erandi; Lim, Young Woon; Piepenbring, Meike; Klavina, Darta; Kõljalg, Urmas; Abarenkov, Kessy.

In: Fungal Diversity, Vol. 111, No. 1, 2021, p. 573-588.

Research output: Contribution to journal › Journal article › Research › peer-review

Tedersoo, L, Mikryukov, V, Anslan, S, Bahram, M, Khalid, AN, Corrales, A, Agan, A, Vasco-Palacios, AM, Saitta, A, Antonelli, A, Rinaldi, AC, Verbeken, A, Sulistyo, BP, Tamgnoue, B, Furneaux, B, Ritter, CD, Nyamukondiwa, C, Sharp, C, Marín, C, Dai, DQ, Gohar, D, Sharmah, D, Biersma, EM, Cameron, EK, De Crop, E, Otsing, E, Davydov, EA, Albornoz, FE, Brearley, FQ, Buegger, F, Gates, G, Zahn, G, Bonito, G, Hiiesalu, I, Hiiesalu, I, Zettur, I, Barrio, IC, Pärn, J, Heilmann-Clausen, J, Ankuda, J, Kupagme, JY, Sarapuu, J, Maciá-Vicente, JG, Fovo, JD, Geml, J, Alatalo, JM, Alvarez-Manjarrez, J, Monkai, J, Põldmaa, K, Runnel, K, Adamson, K, Bråthen, KA, Pritsch, K, Tchan, KI, Armolaitis, K, Hyde, KD, Newsham, KK, Panksep, K, Adebola, LA, Lamit, LJ, Saba, M, da Silva Cáceres, ME, Tuomi, M, Gryzenhout, M, Bauters, M, Bálint, M, Wijayawardene, N, Hagh-Doust, N, Yorou, NS, Kurina, O, Mortimer, PE, Meidl, P, Nilsson, RH, Puusepp, R, Casique-Valdés, R, Drenkhan, R, Garibay-Orijel, R, Godoy, R, Alfarraj, S, Rahimlou, S, Põlme, S, Dudov, SV, Mundra, S, Ahmed, T, Netherway, T, Henkel, TW, Roslin, T, Fedosov, VE, Onipchenko, VG, Yasanthika, WAE, Lim, YW, Piepenbring, M, Klavina, D, Kõljalg, U & Abarenkov, K 2021, 'The Global Soil Mycobiome consortium dataset for boosting fungal diversity research', Fungal Diversity, vol. 111, no. 1, pp. 573-588. https://doi.org/10.1007/s13225-021-00493-7

Tedersoo, Leho ; Mikryukov, Vladimir ; Anslan, Sten ; Bahram, Mohammad ; Khalid, Abdul Nasir ; Corrales, Adriana ; Agan, Ahto ; Vasco-Palacios, Aída M. ; Saitta, Alessandro ; Antonelli, Alexandre ; Rinaldi, Andrea C. ; Verbeken, Annemieke ; Sulistyo, Bobby P. ; Tamgnoue, Boris ; Furneaux, Brendan ; Ritter, Camila Duarte ; Nyamukondiwa, Casper ; Sharp, Cathy ; Marín, César ; Dai, D. Q. ; Gohar, Daniyal ; Sharmah, Dipon ; Biersma, Elisabeth Machteld ; Cameron, Erin K. ; De Crop, Eske ; Otsing, Eveli ; Davydov, Evgeny A. ; Albornoz, Felipe E. ; Brearley, Francis Q. ; Buegger, Franz ; Gates, Genevieve ; Zahn, Geoffrey ; Bonito, Gregory ; Hiiesalu, Indrek ; Hiiesalu, Inga ; Zettur, Irma ; Barrio, Isabel C. ; Pärn, Jaan ; Heilmann-Clausen, Jacob ; Ankuda, Jelena ; Kupagme, John Y. ; Sarapuu, Joosep ; Maciá-Vicente, Jose G. ; Fovo, Joseph Djeugap ; Geml, József ; Alatalo, Juha M. ; Alvarez-Manjarrez, Julieta ; Monkai, Jutamart ; Põldmaa, Kadri ; Runnel, Kadri ; Adamson, Kalev ; Bråthen, Kari A. ; Pritsch, Karin ; Tchan, Kassim I. ; Armolaitis, Kęstutis ; Hyde, Kevin D. ; Newsham, Kevin K. ; Panksep, Kristel ; Adebola, Lateef A. ; Lamit, Louis J. ; Saba, Malka ; da Silva Cáceres, Marcela E. ; Tuomi, Maria ; Gryzenhout, Marieka ; Bauters, Marijn ; Bálint, Miklós ; Wijayawardene, Nalin ; Hagh-Doust, Niloufar ; Yorou, Nourou S. ; Kurina, Olavi ; Mortimer, Peter E. ; Meidl, Peter ; Nilsson, R. Henrik ; Puusepp, Rasmus ; Casique-Valdés, Rebeca ; Drenkhan, Rein ; Garibay-Orijel, Roberto ; Godoy, Roberto ; Alfarraj, Saleh ; Rahimlou, Saleh ; Põlme, Sergei ; Dudov, Sergey V. ; Mundra, Sunil ; Ahmed, Talaat ; Netherway, Tarquin ; Henkel, Terry W. ; Roslin, Tomas ; Fedosov, Vladimir E. ; Onipchenko, Vladimir G. ; Yasanthika, W. A. Erandi ; Lim, Young Woon ; Piepenbring, Meike ; Klavina, Darta ; Kõljalg, Urmas ; Abarenkov, Kessy. / The Global Soil Mycobiome consortium dataset for boosting fungal diversity research. In: Fungal Diversity. 2021 ; Vol. 111, No. 1. pp. 573-588.

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abstract = "Fungi are highly important biotic components of terrestrial ecosystems, but we still have a very limited understanding about their diversity and distribution. This data article releases a global soil fungal dataset of the Global Soil Mycobiome consortium (GSMc) to boost further research in fungal diversity, biogeography and macroecology. The dataset comprises 722,682 fungal operational taxonomic units (OTUs) derived from PacBio sequencing of full-length ITS and 18S-V9 variable regions from 3200 plots in 108 countries on all continents. The plots are supplied with geographical and edaphic metadata. The OTUs are taxonomically and functionally assigned to guilds and other functional groups. The entire dataset has been corrected by excluding chimeras, index-switch artefacts and potential contamination. The dataset is more inclusive in terms of geographical breadth and phylogenetic diversity of fungi than previously published data. The GSMc dataset is available over the PlutoF repository.",

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note = "Publisher Copyright: {\textcopyright} 2021, MUSHROOM RESEARCH FOUNDATION.",

year = "2021",

doi = "10.1007/s13225-021-00493-7",

language = "English",

volume = "111",

pages = "573--588",

journal = "Fungal Diversity",

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T1 - The Global Soil Mycobiome consortium dataset for boosting fungal diversity research

AU - Tedersoo, Leho

AU - Mikryukov, Vladimir

AU - Anslan, Sten

AU - Bahram, Mohammad

AU - Khalid, Abdul Nasir

AU - Corrales, Adriana

AU - Agan, Ahto

AU - Vasco-Palacios, Aída M.

AU - Saitta, Alessandro

AU - Antonelli, Alexandre

AU - Rinaldi, Andrea C.

AU - Verbeken, Annemieke

AU - Sulistyo, Bobby P.

AU - Tamgnoue, Boris

AU - Furneaux, Brendan

AU - Ritter, Camila Duarte

AU - Nyamukondiwa, Casper

AU - Sharp, Cathy

AU - Marín, César

AU - Dai, D. Q.

AU - Gohar, Daniyal

AU - Sharmah, Dipon

AU - Biersma, Elisabeth Machteld

AU - Cameron, Erin K.

AU - De Crop, Eske

AU - Otsing, Eveli

AU - Davydov, Evgeny A.

AU - Albornoz, Felipe E.

AU - Brearley, Francis Q.

AU - Buegger, Franz

AU - Gates, Genevieve

AU - Zahn, Geoffrey

AU - Bonito, Gregory

AU - Hiiesalu, Indrek

AU - Hiiesalu, Inga

AU - Zettur, Irma

AU - Barrio, Isabel C.

AU - Pärn, Jaan

AU - Heilmann-Clausen, Jacob

AU - Ankuda, Jelena

AU - Kupagme, John Y.

AU - Sarapuu, Joosep

AU - Maciá-Vicente, Jose G.

AU - Fovo, Joseph Djeugap

AU - Geml, József

AU - Alatalo, Juha M.

AU - Alvarez-Manjarrez, Julieta

AU - Monkai, Jutamart

AU - Põldmaa, Kadri

AU - Runnel, Kadri

AU - Adamson, Kalev

AU - Bråthen, Kari A.

AU - Pritsch, Karin

AU - Tchan, Kassim I.

AU - Armolaitis, Kęstutis

AU - Hyde, Kevin D.

AU - Newsham, Kevin K.

AU - Panksep, Kristel

AU - Adebola, Lateef A.

AU - Lamit, Louis J.

AU - Saba, Malka

AU - da Silva Cáceres, Marcela E.

AU - Tuomi, Maria

AU - Gryzenhout, Marieka

AU - Bauters, Marijn

AU - Bálint, Miklós

AU - Wijayawardene, Nalin

AU - Hagh-Doust, Niloufar

AU - Yorou, Nourou S.

AU - Kurina, Olavi

AU - Mortimer, Peter E.

AU - Meidl, Peter

AU - Nilsson, R. Henrik

AU - Puusepp, Rasmus

AU - Casique-Valdés, Rebeca

AU - Drenkhan, Rein

AU - Garibay-Orijel, Roberto

AU - Godoy, Roberto

AU - Alfarraj, Saleh

AU - Rahimlou, Saleh

AU - Põlme, Sergei

AU - Dudov, Sergey V.

AU - Mundra, Sunil

AU - Ahmed, Talaat

AU - Netherway, Tarquin

AU - Henkel, Terry W.

AU - Roslin, Tomas

AU - Fedosov, Vladimir E.

AU - Onipchenko, Vladimir G.

AU - Yasanthika, W. A. Erandi

AU - Lim, Young Woon

AU - Piepenbring, Meike

AU - Klavina, Darta

AU - Kõljalg, Urmas

AU - Abarenkov, Kessy

PY - 2021

Y1 - 2021

N2 - Fungi are highly important biotic components of terrestrial ecosystems, but we still have a very limited understanding about their diversity and distribution. This data article releases a global soil fungal dataset of the Global Soil Mycobiome consortium (GSMc) to boost further research in fungal diversity, biogeography and macroecology. The dataset comprises 722,682 fungal operational taxonomic units (OTUs) derived from PacBio sequencing of full-length ITS and 18S-V9 variable regions from 3200 plots in 108 countries on all continents. The plots are supplied with geographical and edaphic metadata. The OTUs are taxonomically and functionally assigned to guilds and other functional groups. The entire dataset has been corrected by excluding chimeras, index-switch artefacts and potential contamination. The dataset is more inclusive in terms of geographical breadth and phylogenetic diversity of fungi than previously published data. The GSMc dataset is available over the PlutoF repository.

AB - Fungi are highly important biotic components of terrestrial ecosystems, but we still have a very limited understanding about their diversity and distribution. This data article releases a global soil fungal dataset of the Global Soil Mycobiome consortium (GSMc) to boost further research in fungal diversity, biogeography and macroecology. The dataset comprises 722,682 fungal operational taxonomic units (OTUs) derived from PacBio sequencing of full-length ITS and 18S-V9 variable regions from 3200 plots in 108 countries on all continents. The plots are supplied with geographical and edaphic metadata. The OTUs are taxonomically and functionally assigned to guilds and other functional groups. The entire dataset has been corrected by excluding chimeras, index-switch artefacts and potential contamination. The dataset is more inclusive in terms of geographical breadth and phylogenetic diversity of fungi than previously published data. The GSMc dataset is available over the PlutoF repository.

KW - Fungal richness

KW - Global dataset

KW - PacBio sequencing

KW - Soil fungi

U2 - 10.1007/s13225-021-00493-7

DO - 10.1007/s13225-021-00493-7

M3 - Journal article

AN - SCOPUS:85120358779

VL - 111

SP - 573

EP - 588

JO - Fungal Diversity

JF - Fungal Diversity

SN - 1560-2745

IS - 1

ER -