The scverse project provides a computational ecosystem for single-cell omics data analysis

Isaac Virshup; Danila Bredikhin; Lukas Heumos; Giovanni Palla; Gregor Sturm; Adam Gayoso; Ilia Kats; Mikaela Koutrouli; Philipp Angerer; Volker Bergen; Pierre Boyeau; Maren Büttner; Gokcen Eraslan; David Fischer; Max Frank; Justin Hong; Michal Klein; Marius Lange; Romain Lopez; Mohammad Lotfollahi; Malte D. Luecken; Fidel Ramirez; Jeffrey Regier; Sergei Rybakov; Anna C. Schaar; Valeh Valiollah Pour Amiri; Philipp Weiler; Galen Xing; Bonnie Berger; Dana Pe’er; Aviv Regev; Sarah A. Teichmann; Francesca Finotello; F. Alexander Wolf; Nir Yosef; Oliver Stegle; Fabian J. Theis; Scverse Community

doi:10.1038/s41587-023-01733-8

The scverse project provides a computational ecosystem for single-cell omics data analysis

Isaac Virshup^*, Danila Bredikhin, Lukas Heumos, Giovanni Palla, Gregor Sturm, Adam Gayoso, Ilia Kats, Mikaela Koutrouli, Philipp Angerer, Volker Bergen, Pierre Boyeau, Maren Büttner, Gokcen Eraslan, David Fischer, Max Frank, Justin Hong, Michal Klein, Marius Lange, Romain Lopez, Mohammad LotfollahiMalte D. Luecken, Fidel Ramirez, Jeffrey Regier, Sergei Rybakov, Anna C. Schaar, Valeh Valiollah Pour Amiri, Philipp Weiler, Galen Xing, Bonnie Berger, Dana Pe’er, Aviv Regev, Sarah A. Teichmann, Francesca Finotello, F. Alexander Wolf, Nir Yosef, Oliver Stegle, Fabian J. Theis, Scverse Community

^*Corresponding author for this work

Jensen Group

Research output: Contribution to journal › Letter › Research › peer-review

60 Citations (Scopus)

Original language	English
Journal	Nature Biotechnology
Volume	41
Pages (from-to)	604-606
ISSN	1087-0156
DOIs	https://doi.org/10.1038/s41587-023-01733-8
Publication status	Published - 2023

Access to Document

10.1038/s41587-023-01733-8

Cite this

Virshup, I., Bredikhin, D., Heumos, L., Palla, G., Sturm, G., Gayoso, A., Kats, I., Koutrouli, M., Angerer, P., Bergen, V., Boyeau, P., Büttner, M., Eraslan, G., Fischer, D., Frank, M., Hong, J., Klein, M., Lange, M., Lopez, R., ... Scverse Community (2023). The scverse project provides a computational ecosystem for single-cell omics data analysis. Nature Biotechnology, 41, 604-606. https://doi.org/10.1038/s41587-023-01733-8

The scverse project provides a computational ecosystem for single-cell omics data analysis. / Virshup, Isaac; Bredikhin, Danila; Heumos, Lukas; Palla, Giovanni; Sturm, Gregor; Gayoso, Adam; Kats, Ilia; Koutrouli, Mikaela; Angerer, Philipp; Bergen, Volker; Boyeau, Pierre; Büttner, Maren; Eraslan, Gokcen; Fischer, David; Frank, Max; Hong, Justin; Klein, Michal; Lange, Marius; Lopez, Romain; Lotfollahi, Mohammad; Luecken, Malte D.; Ramirez, Fidel; Regier, Jeffrey; Rybakov, Sergei; Schaar, Anna C.; Valiollah Pour Amiri, Valeh; Weiler, Philipp; Xing, Galen; Berger, Bonnie; Pe’er, Dana; Regev, Aviv; Teichmann, Sarah A.; Finotello, Francesca; Wolf, F. Alexander; Yosef, Nir; Stegle, Oliver; Theis, Fabian J.; Scverse Community.

In: Nature Biotechnology, Vol. 41, 2023, p. 604-606.

Research output: Contribution to journal › Letter › Research › peer-review

Virshup, I, Bredikhin, D, Heumos, L, Palla, G, Sturm, G, Gayoso, A, Kats, I, Koutrouli, M, Angerer, P, Bergen, V, Boyeau, P, Büttner, M, Eraslan, G, Fischer, D, Frank, M, Hong, J, Klein, M, Lange, M, Lopez, R, Lotfollahi, M, Luecken, MD, Ramirez, F, Regier, J, Rybakov, S, Schaar, AC, Valiollah Pour Amiri, V, Weiler, P, Xing, G, Berger, B, Pe’er, D, Regev, A, Teichmann, SA, Finotello, F, Wolf, FA, Yosef, N, Stegle, O, Theis, FJ & Scverse Community 2023, 'The scverse project provides a computational ecosystem for single-cell omics data analysis', Nature Biotechnology, vol. 41, pp. 604-606. https://doi.org/10.1038/s41587-023-01733-8

Virshup, Isaac ; Bredikhin, Danila ; Heumos, Lukas ; Palla, Giovanni ; Sturm, Gregor ; Gayoso, Adam ; Kats, Ilia ; Koutrouli, Mikaela ; Angerer, Philipp ; Bergen, Volker ; Boyeau, Pierre ; Büttner, Maren ; Eraslan, Gokcen ; Fischer, David ; Frank, Max ; Hong, Justin ; Klein, Michal ; Lange, Marius ; Lopez, Romain ; Lotfollahi, Mohammad ; Luecken, Malte D. ; Ramirez, Fidel ; Regier, Jeffrey ; Rybakov, Sergei ; Schaar, Anna C. ; Valiollah Pour Amiri, Valeh ; Weiler, Philipp ; Xing, Galen ; Berger, Bonnie ; Pe’er, Dana ; Regev, Aviv ; Teichmann, Sarah A. ; Finotello, Francesca ; Wolf, F. Alexander ; Yosef, Nir ; Stegle, Oliver ; Theis, Fabian J. ; Scverse Community. / The scverse project provides a computational ecosystem for single-cell omics data analysis. In: Nature Biotechnology. 2023 ; Vol. 41. pp. 604-606.

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title = "The scverse project provides a computational ecosystem for single-cell omics data analysis",

author = "Isaac Virshup and Danila Bredikhin and Lukas Heumos and Giovanni Palla and Gregor Sturm and Adam Gayoso and Ilia Kats and Mikaela Koutrouli and Philipp Angerer and Volker Bergen and Pierre Boyeau and Maren B{\"u}ttner and Gokcen Eraslan and David Fischer and Max Frank and Justin Hong and Michal Klein and Marius Lange and Romain Lopez and Mohammad Lotfollahi and Luecken, {Malte D.} and Fidel Ramirez and Jeffrey Regier and Sergei Rybakov and Schaar, {Anna C.} and {Valiollah Pour Amiri}, Valeh and Philipp Weiler and Galen Xing and Bonnie Berger and Dana Pe{\textquoteright}er and Aviv Regev and Teichmann, {Sarah A.} and Francesca Finotello and Wolf, {F. Alexander} and Nir Yosef and Oliver Stegle and Theis, {Fabian J.} and {Scverse Community}",

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AU - Klein, Michal

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AU - Lopez, Romain

AU - Lotfollahi, Mohammad

AU - Luecken, Malte D.

AU - Ramirez, Fidel

AU - Regier, Jeffrey

AU - Rybakov, Sergei

AU - Schaar, Anna C.

AU - Valiollah Pour Amiri, Valeh

AU - Weiler, Philipp

AU - Xing, Galen

AU - Berger, Bonnie

AU - Pe’er, Dana

AU - Regev, Aviv

AU - Teichmann, Sarah A.

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AU - Wolf, F. Alexander

AU - Yosef, Nir

AU - Stegle, Oliver

AU - Theis, Fabian J.

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